EHI_109860 | chromatin-specific transcription elongation factor, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
EHI_109860OTHER0.9775820.0015180.020900
No Results

  • Fasta :-

    >EHI_109860 MKSASQLSCLLLKKRFVPKMKDILETEDQVSHKDIVEYIKSGVKDEKILKEVPNAEQSIV DAQVLSGTFTYTWPPVTSEGCLKDTIMFVYIKVQIEGETAIVARTYGVDVSKEIKHTYNQ LLRLEQTLASKYKSGIKVDTKVIEVAGLSQQVEIIKGEEILKEGSVIMIRVWSGQLMICD TCYIGSKGLINLTKFVGSNSSSVFFSFKDEEEPAEVLSKFRDKKQQEDEDELKEYEQQRK ETMKEEHRPKVETLKKEKIKAICYNNQKEMPSKNALYINSDVKKYAILLPINGQLVPFHV AYIKNITTREGFFRINFNVPRETEEGTVYVKELSFHVRDSDRISRIENDWKEMKKKWNEE EKIRNIRGMKEEKLVLRKESVPILRSVCINPVLKGKRTEGVLEAHMNGFRFVSSGGNVEL MYDNIQHAFFQNGDTETVILLHFHMDPPVIIQNRPISDIQFYNEIMDISLNIDRGDRYYS EAEEAREEEREKRIRAKYNHLYAEFLTKVKEKDIPVSFEVPFRELKFGGTIKRNTATLVP TVKCLINISDAPYKVIELDTIEVVVFERLSRSLTLKNFDMVVIFKDHHKPVLQISSVSKT DLDHIKKWLNKCEIKSYETVQSLNWINIMEAVNSDPVAFAEKGWSFLDADNTKSDSEESE EVFEPDEELEKELDAEDDLSTDLSSEEESSSSSEEEDDDGESWSDLEREAIKDDLVKDRE EHEMIGRAQMMKQRQRVQQRRPSQQRSTTIQNFFKKTSTTPTTSSSSNSRLQPIKINKAF VPTKKPSNLGGIKRQFSSSYAGTKKP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_109860.fa Sequence name : EHI_109860 Sequence length : 806 VALUES OF COMPUTED PARAMETERS Coef20 : 4.483 CoefTot : 0.127 ChDiff : -14 ZoneTo : 21 KR : 6 DE : 0 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.000 1.341 0.063 0.616 MesoH : -0.445 0.466 -0.320 0.239 MuHd_075 : 28.497 18.423 7.159 6.895 MuHd_095 : 21.786 12.034 7.002 3.665 MuHd_100 : 11.329 5.068 3.715 1.854 MuHd_105 : 18.098 12.672 4.579 4.794 Hmax_075 : 17.850 20.533 3.381 6.323 Hmax_095 : 14.700 11.200 3.021 3.490 Hmax_100 : 4.300 9.300 0.005 2.840 Hmax_105 : 4.400 12.700 -0.258 3.640 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0895 0.9105 DFMC : 0.1146 0.8854 This protein is probably imported in chloroplast. f(Ser) = 0.1429 f(Arg) = 0.0476 CMi = 1.04530 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 806 EHI_109860 MKSASQLSCLLLKKRFVPKMKDILETEDQVSHKDIVEYIKSGVKDEKILKEVPNAEQSIVDAQVLSGTFTYTWPPVTSEG 80 CLKDTIMFVYIKVQIEGETAIVARTYGVDVSKEIKHTYNQLLRLEQTLASKYKSGIKVDTKVIEVAGLSQQVEIIKGEEI 160 LKEGSVIMIRVWSGQLMICDTCYIGSKGLINLTKFVGSNSSSVFFSFKDEEEPAEVLSKFRDKKQQEDEDELKEYEQQRK 240 ETMKEEHRPKVETLKKEKIKAICYNNQKEMPSKNALYINSDVKKYAILLPINGQLVPFHVAYIKNITTREGFFRINFNVP 320 RETEEGTVYVKELSFHVRDSDRISRIENDWKEMKKKWNEEEKIRNIRGMKEEKLVLRKESVPILRSVCINPVLKGKRTEG 400 VLEAHMNGFRFVSSGGNVELMYDNIQHAFFQNGDTETVILLHFHMDPPVIIQNRPISDIQFYNEIMDISLNIDRGDRYYS 480 EAEEAREEEREKRIRAKYNHLYAEFLTKVKEKDIPVSFEVPFRELKFGGTIKRNTATLVPTVKCLINISDAPYKVIELDT 560 IEVVVFERLSRSLTLKNFDMVVIFKDHHKPVLQISSVSKTDLDHIKKWLNKCEIKSYETVQSLNWINIMEAVNSDPVAFA 640 EKGWSFLDADNTKSDSEESEEVFEPDEELEKELDAEDDLSTDLSSEEESSSSSEEEDDDGESWSDLEREAIKDDLVKDRE 720 EHEMIGRAQMMKQRQRVQQRRPSQQRSTTIQNFFKKTSTTPTTSSSSNSRLQPIKINKAFVPTKKPSNLGGIKRQFSSSY 800 AGTKKP 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ...... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_109860 2 -----MK|SA 0.104 . EHI_109860 13 LSCLLLK|KR 0.054 . EHI_109860 14 SCLLLKK|RF 0.077 . EHI_109860 15 CLLLKKR|FV 0.259 . EHI_109860 19 KKRFVPK|MK 0.090 . EHI_109860 21 RFVPKMK|DI 0.102 . EHI_109860 33 EDQVSHK|DI 0.092 . EHI_109860 40 DIVEYIK|SG 0.070 . EHI_109860 44 YIKSGVK|DE 0.054 . EHI_109860 47 SGVKDEK|IL 0.071 . EHI_109860 50 KDEKILK|EV 0.074 . EHI_109860 83 TSEGCLK|DT 0.072 . EHI_109860 92 IMFVYIK|VQ 0.064 . EHI_109860 104 ETAIVAR|TY 0.118 . EHI_109860 112 YGVDVSK|EI 0.065 . EHI_109860 115 DVSKEIK|HT 0.074 . EHI_109860 123 TYNQLLR|LE 0.069 . EHI_109860 131 EQTLASK|YK 0.062 . EHI_109860 133 TLASKYK|SG 0.111 . EHI_109860 137 KYKSGIK|VD 0.059 . EHI_109860 141 GIKVDTK|VI 0.073 . EHI_109860 156 QQVEIIK|GE 0.065 . EHI_109860 162 KGEEILK|EG 0.060 . EHI_109860 170 GSVIMIR|VW 0.107 . EHI_109860 187 TCYIGSK|GL 0.063 . EHI_109860 194 GLINLTK|FV 0.101 . EHI_109860 208 SVFFSFK|DE 0.069 . EHI_109860 219 PAEVLSK|FR 0.070 . EHI_109860 221 EVLSKFR|DK 0.128 . EHI_109860 223 LSKFRDK|KQ 0.068 . EHI_109860 224 SKFRDKK|QQ 0.350 . EHI_109860 233 EDEDELK|EY 0.069 . EHI_109860 239 KEYEQQR|KE 0.103 . EHI_109860 240 EYEQQRK|ET 0.099 . EHI_109860 244 QRKETMK|EE 0.067 . EHI_109860 248 TMKEEHR|PK 0.076 . EHI_109860 250 KEEHRPK|VE 0.057 . EHI_109860 255 PKVETLK|KE 0.056 . EHI_109860 256 KVETLKK|EK 0.095 . EHI_109860 258 ETLKKEK|IK 0.058 . EHI_109860 260 LKKEKIK|AI 0.079 . EHI_109860 268 ICYNNQK|EM 0.054 . EHI_109860 273 QKEMPSK|NA 0.072 . EHI_109860 283 YINSDVK|KY 0.063 . EHI_109860 284 INSDVKK|YA 0.155 . EHI_109860 304 FHVAYIK|NI 0.066 . EHI_109860 309 IKNITTR|EG 0.092 . EHI_109860 314 TREGFFR|IN 0.129 . EHI_109860 321 INFNVPR|ET 0.131 . EHI_109860 331 EGTVYVK|EL 0.060 . EHI_109860 338 ELSFHVR|DS 0.196 . EHI_109860 342 HVRDSDR|IS 0.099 . EHI_109860 345 DSDRISR|IE 0.171 . EHI_109860 351 RIENDWK|EM 0.061 . EHI_109860 354 NDWKEMK|KK 0.065 . EHI_109860 355 DWKEMKK|KW 0.106 . EHI_109860 356 WKEMKKK|WN 0.131 . EHI_109860 362 KWNEEEK|IR 0.066 . EHI_109860 364 NEEEKIR|NI 0.091 . EHI_109860 367 EKIRNIR|GM 0.219 . EHI_109860 370 RNIRGMK|EE 0.109 . EHI_109860 373 RGMKEEK|LV 0.075 . EHI_109860 377 EEKLVLR|KE 0.074 . EHI_109860 378 EKLVLRK|ES 0.085 . EHI_109860 385 ESVPILR|SV 0.166 . EHI_109860 394 CINPVLK|GK 0.071 . EHI_109860 396 NPVLKGK|RT 0.082 . EHI_109860 397 PVLKGKR|TE 0.158 . EHI_109860 410 AHMNGFR|FV 0.169 . EHI_109860 454 PVIIQNR|PI 0.138 . EHI_109860 474 ISLNIDR|GD 0.075 . EHI_109860 477 NIDRGDR|YY 0.262 . EHI_109860 486 SEAEEAR|EE 0.104 . EHI_109860 490 EAREEER|EK 0.074 . EHI_109860 492 REEEREK|RI 0.071 . EHI_109860 493 EEEREKR|IR 0.391 . EHI_109860 495 EREKRIR|AK 0.109 . EHI_109860 497 EKRIRAK|YN 0.081 . EHI_109860 508 YAEFLTK|VK 0.066 . EHI_109860 510 EFLTKVK|EK 0.054 . EHI_109860 512 LTKVKEK|DI 0.091 . EHI_109860 523 SFEVPFR|EL 0.102 . EHI_109860 526 VPFRELK|FG 0.157 . EHI_109860 532 KFGGTIK|RN 0.064 . EHI_109860 533 FGGTIKR|NT 0.172 . EHI_109860 543 TLVPTVK|CL 0.065 . EHI_109860 554 ISDAPYK|VI 0.063 . EHI_109860 568 EVVVFER|LS 0.068 . EHI_109860 571 VFERLSR|SL 0.289 . EHI_109860 576 SRSLTLK|NF 0.081 . EHI_109860 585 DMVVIFK|DH 0.071 . EHI_109860 589 IFKDHHK|PV 0.077 . EHI_109860 599 QISSVSK|TD 0.068 . EHI_109860 606 TDLDHIK|KW 0.062 . EHI_109860 607 DLDHIKK|WL 0.097 . EHI_109860 611 IKKWLNK|CE 0.067 . EHI_109860 615 LNKCEIK|SY 0.101 . EHI_109860 642 PVAFAEK|GW 0.063 . EHI_109860 653 LDADNTK|SD 0.081 . EHI_109860 671 PDEELEK|EL 0.062 . EHI_109860 708 SWSDLER|EA 0.098 . EHI_109860 712 LEREAIK|DD 0.069 . EHI_109860 717 IKDDLVK|DR 0.077 . EHI_109860 719 DDLVKDR|EE 0.090 . EHI_109860 727 EHEMIGR|AQ 0.087 . EHI_109860 732 GRAQMMK|QR 0.073 . EHI_109860 734 AQMMKQR|QR 0.100 . EHI_109860 736 MMKQRQR|VQ 0.080 . EHI_109860 740 RQRVQQR|RP 0.142 . EHI_109860 741 QRVQQRR|PS 0.163 . EHI_109860 746 RRPSQQR|ST 0.193 . EHI_109860 755 TIQNFFK|KT 0.085 . EHI_109860 756 IQNFFKK|TS 0.120 . EHI_109860 770 SSSSNSR|LQ 0.092 . EHI_109860 775 SRLQPIK|IN 0.071 . EHI_109860 778 QPIKINK|AF 0.062 . EHI_109860 784 KAFVPTK|KP 0.068 . EHI_109860 785 AFVPTKK|PS 0.085 . EHI_109860 793 SNLGGIK|RQ 0.056 . EHI_109860 794 NLGGIKR|QF 0.212 . EHI_109860 804 SSYAGTK|KP 0.063 . EHI_109860 805 SYAGTKK|P- 0.108 . ____________________________^_________________

  • Fasta :-

    >EHI_109860 ATGAAATCAGCTTCTCAACTTTCATGTCTCCTTCTCAAAAAACGATTTGTTCCTAAAATG AAAGATATATTGGAAACAGAAGATCAAGTATCACACAAAGATATTGTAGAGTATATTAAA AGTGGAGTAAAAGATGAAAAAATATTAAAAGAAGTACCTAATGCTGAACAAAGTATTGTT GATGCACAAGTACTATCAGGAACTTTTACTTACACATGGCCACCAGTCACTTCAGAAGGA TGTTTGAAAGATACCATCATGTTTGTTTATATAAAAGTACAAATTGAAGGTGAAACTGCT ATTGTTGCAAGAACTTATGGGGTTGATGTTAGTAAAGAAATTAAACATACATATAATCAA TTATTAAGATTAGAACAAACATTAGCAAGTAAGTATAAATCAGGAATAAAAGTTGATACT AAAGTAATTGAAGTAGCAGGGTTAAGTCAACAAGTCGAGATTATTAAAGGAGAAGAAATA TTAAAAGAAGGAAGTGTTATAATGATTCGAGTTTGGAGTGGTCAATTAATGATTTGTGAT ACATGTTATATTGGTAGTAAAGGACTTATTAATTTAACTAAATTTGTTGGTAGTAATAGT TCTAGTGTCTTCTTCTCATTTAAAGATGAAGAAGAACCAGCAGAAGTATTATCTAAATTC AGAGATAAGAAGCAACAAGAAGATGAAGATGAATTAAAAGAATATGAACAACAAAGAAAA GAAACTATGAAAGAAGAACATAGACCAAAAGTAGAAACTTTAAAAAAAGAAAAAATTAAA GCAATATGTTATAATAACCAAAAAGAAATGCCTTCAAAAAATGCATTATATATTAATTCT GATGTAAAAAAATATGCTATTTTATTACCAATTAATGGTCAATTAGTTCCATTTCATGTT GCATATATTAAAAACATTACTACAAGAGAAGGATTTTTCCGTATTAATTTTAATGTCCCT AGAGAGACTGAAGAAGGAACAGTTTATGTAAAAGAATTATCATTTCATGTAAGAGACTCA GATAGAATTTCAAGAATAGAAAATGATTGGAAAGAAATGAAAAAAAAATGGAATGAAGAA GAGAAGATTAGAAATATAAGAGGAATGAAAGAAGAGAAATTAGTATTAAGAAAAGAAAGT GTCCCAATACTTAGGTCAGTTTGCATTAATCCAGTATTAAAAGGAAAAAGAACTGAAGGT GTTCTTGAAGCACATATGAATGGATTTAGATTTGTTTCATCAGGTGGAAATGTAGAGCTA ATGTATGATAATATTCAACACGCCTTTTTCCAAAATGGTGATACAGAAACAGTTATATTA TTACATTTTCATATGGATCCACCAGTTATTATTCAAAACAGACCTATATCAGATATTCAA TTTTATAATGAAATTATGGATATTTCACTTAATATTGATCGTGGAGATAGGTATTATAGC GAAGCAGAAGAAGCAAGAGAAGAAGAAAGAGAAAAAAGAATTCGTGCAAAATATAATCAT TTATATGCTGAATTTTTAACAAAAGTCAAAGAAAAAGATATTCCTGTTAGTTTTGAAGTT CCTTTCAGAGAATTAAAGTTTGGAGGAACAATTAAAAGAAATACAGCTACTTTAGTTCCA ACTGTTAAATGTCTTATTAATATTTCTGATGCTCCATATAAAGTTATTGAATTAGATACA ATAGAAGTTGTAGTATTTGAAAGATTATCAAGAAGTCTTACCTTAAAAAATTTTGATATG GTAGTAATTTTTAAAGACCATCATAAACCAGTATTACAAATTAGTTCAGTTTCAAAAACT GATTTAGATCATATCAAAAAATGGTTAAATAAATGTGAAATTAAAAGTTATGAAACAGTC CAGAGTTTAAATTGGATAAATATTATGGAAGCTGTTAATTCAGACCCAGTGGCTTTTGCT GAGAAAGGTTGGTCATTCTTAGATGCAGACAATACCAAGTCTGATAGTGAAGAGTCAGAA GAAGTTTTTGAACCTGATGAAGAATTAGAAAAAGAATTAGATGCAGAGGATGACCTTTCT ACTGACCTTTCAAGTGAAGAAGAATCAAGTTCAAGTAGTGAAGAAGAGGATGATGATGGA GAAAGTTGGTCTGATCTAGAAAGAGAAGCTATTAAAGATGATCTTGTCAAAGACAGAGAA GAACATGAGATGATAGGTCGAGCCCAAATGATGAAACAACGCCAAAGAGTTCAACAAAGA AGACCATCACAACAACGAAGTACTACAATACAAAATTTCTTCAAGAAAACATCAACAACT CCAACAACATCCTCTTCTAGTAATTCTAGATTACAGCCGATTAAAATTAATAAAGCATTT GTTCCTACAAAGAAACCAAGTAACTTAGGAGGGATAAAACGTCAATTCTCTAGTAGTTAT GCAGGAACAAAGAAACCTTAA
  • Download Fasta

  • Fasta :-

    MKSASQLSCLLLKKRFVPKMKDILETEDQVSHKDIVEYIKSGVKDEKILKEVPNAEQSIV DAQVLSGTFTYTWPPVTSEGCLKDTIMFVYIKVQIEGETAIVARTYGVDVSKEIKHTYNQ LLRLEQTLASKYKSGIKVDTKVIEVAGLSQQVEIIKGEEILKEGSVIMIRVWSGQLMICD TCYIGSKGLINLTKFVGSNSSSVFFSFKDEEEPAEVLSKFRDKKQQEDEDELKEYEQQRK ETMKEEHRPKVETLKKEKIKAICYNNQKEMPSKNALYINSDVKKYAILLPINGQLVPFHV AYIKNITTREGFFRINFNVPRETEEGTVYVKELSFHVRDSDRISRIENDWKEMKKKWNEE EKIRNIRGMKEEKLVLRKESVPILRSVCINPVLKGKRTEGVLEAHMNGFRFVSSGGNVEL MYDNIQHAFFQNGDTETVILLHFHMDPPVIIQNRPISDIQFYNEIMDISLNIDRGDRYYS EAEEAREEEREKRIRAKYNHLYAEFLTKVKEKDIPVSFEVPFRELKFGGTIKRNTATLVP TVKCLINISDAPYKVIELDTIEVVVFERLSRSLTLKNFDMVVIFKDHHKPVLQISSVSKT DLDHIKKWLNKCEIKSYETVQSLNWINIMEAVNSDPVAFAEKGWSFLDADNTKSDSEESE EVFEPDEELEKELDAEDDLSTDLSSEEESSSSSEEEDDDGESWSDLEREAIKDDLVKDRE EHEMIGRAQMMKQRQRVQQRRPSQQRSTTIQNFFKKTSTTPTTSSSSNSRLQPIKINKAF VPTKKPSNLGGIKRQFSSSYAGTKKP

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
EHI_109860340 SHVRDSDRIS0.996unspEHI_109860340 SHVRDSDRIS0.996unspEHI_109860340 SHVRDSDRIS0.996unspEHI_109860344 SSDRISRIEN0.998unspEHI_109860480 SDRYYSEAEE0.992unspEHI_109860598 SISSVSKTDL0.995unspEHI_109860656 STKSDSEESE0.996unspEHI_109860659 SDSEESEEVF0.991unspEHI_109860684 SSTDLSSEEE0.993unspEHI_109860685 STDLSSEEES0.997unspEHI_109860691 SEESSSSSEE0.996unspEHI_109860692 SESSSSSEEE0.998unspEHI_109860693 SSSSSSEEED0.998unspEHI_109860702 SDDGESWSDL0.997unspEHI_109860743 SQRRPSQQRS0.997unspEHI_10986031 SEDQVSHKDI0.998unspEHI_109860206 SSVFFSFKDE0.997unsp

EHI_109860      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India