EHI_121860 | microsomal signal peptidase subunit, putative

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  • Fasta :-

    >EHI_121860 MYHTLERMYNISYFAFQWLGVAVFFLYLSSLILYVPPITSVSHNTTNMVKSFKKGSYSDF TIDLDVDFTPSFNWNTKMIFVWVKASFTNKNVPYNTATVWDTMIRKKEKAHLHLTNERIE YPLVSSYNSLLGKEVELTVEWMVVPWSGATTVEHGNSTKFVLPTEFSK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_121860.fa Sequence name : EHI_121860 Sequence length : 168 VALUES OF COMPUTED PARAMETERS Coef20 : 3.861 CoefTot : -1.510 ChDiff : 1 ZoneTo : 58 KR : 4 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.041 2.288 0.384 0.815 MesoH : 0.151 0.459 -0.292 0.322 MuHd_075 : 21.991 16.199 5.781 5.688 MuHd_095 : 29.072 22.772 9.161 6.539 MuHd_100 : 36.159 27.998 12.040 8.649 MuHd_105 : 40.309 28.409 13.020 8.983 Hmax_075 : 11.600 8.633 -1.458 4.680 Hmax_095 : 8.662 13.000 2.222 3.509 Hmax_100 : 17.600 16.500 3.053 5.870 Hmax_105 : 13.600 17.762 2.774 3.370 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7581 0.2419 DFMC : 0.7464 0.2536
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 168 EHI_121860 MYHTLERMYNISYFAFQWLGVAVFFLYLSSLILYVPPITSVSHNTTNMVKSFKKGSYSDFTIDLDVDFTPSFNWNTKMIF 80 VWVKASFTNKNVPYNTATVWDTMIRKKEKAHLHLTNERIEYPLVSSYNSLLGKEVELTVEWMVVPWSGATTVEHGNSTKF 160 VLPTEFSK 240 ................................................................................ 80 ................................................................................ 160 ........ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_121860 7 MYHTLER|MY 0.093 . EHI_121860 50 NTTNMVK|SF 0.069 . EHI_121860 53 NMVKSFK|KG 0.068 . EHI_121860 54 MVKSFKK|GS 0.099 . EHI_121860 77 SFNWNTK|MI 0.080 . EHI_121860 84 MIFVWVK|AS 0.070 . EHI_121860 90 KASFTNK|NV 0.087 . EHI_121860 105 VWDTMIR|KK 0.085 . EHI_121860 106 WDTMIRK|KE 0.073 . EHI_121860 107 DTMIRKK|EK 0.086 . EHI_121860 109 MIRKKEK|AH 0.066 . EHI_121860 118 LHLTNER|IE 0.073 . EHI_121860 133 YNSLLGK|EV 0.090 . EHI_121860 159 EHGNSTK|FV 0.095 . EHI_121860 168 LPTEFSK|-- 0.066 . ____________________________^_________________

  • Fasta :-

    >EHI_121860 ATGTATCATACTTTAGAACGTATGTATAATATTAGTTATTTTGCTTTTCAATGGCTAGGT GTAGCAGTTTTCTTCTTATATTTATCATCATTAATACTATATGTTCCTCCTATAACTTCA GTATCACATAATACAACGAATATGGTTAAGTCATTTAAAAAAGGTTCTTATTCTGACTTT ACAATAGATTTAGATGTTGACTTTACACCATCATTCAATTGGAACACAAAAATGATTTTT GTTTGGGTCAAAGCATCGTTTACAAATAAGAATGTTCCATATAACACAGCAACTGTTTGG GATACTATGATCAGAAAGAAAGAAAAAGCACATTTACATTTAACAAATGAAAGAATTGAA TATCCTTTAGTTAGTTCCTATAATAGTTTACTTGGAAAAGAAGTTGAGTTAACAGTTGAA TGGATGGTTGTCCCATGGTCTGGTGCTACTACTGTTGAACATGGAAATTCTACTAAATTC GTACTTCCTACTGAATTTTCTAAATAA
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  • Fasta :-

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IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
EHI_121860T1640.5740.178EHI_121860T1580.5480.031
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
EHI_121860T1640.5740.178EHI_121860T1580.5480.031
IDSitePeptideScoreMethod
EHI_12186056 SFKKGSYSDF0.992unsp

EHI_121860      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India