EHI_188280 | presenilin 1 peptidase, putative

_IDPredictionOTHERSPmTPCS_Position
EHI_188280OTHER1.0000000.0000000.000000
No Results

  • Fasta :-

    >EHI_188280 MSDTTHYHRLKEEDDENLNKEIDTLSEQNEIHVISDEQQLSKNKVENKENKSDEEEVEMI TFAEYSESVNAVITPVAITLLLTVIIVKLLERSNDLYSQATSYIFSEGIESSTTIPIWLI AIIVSVIFIIMIVIVTFVFVLLFYYRCMKLIVGWLLFSVILLLMLFGGSIMKSLLSVFNW PVDWISFAFLLFNFGVLGVISIFYISPMKLNQFYMIIISVFMASFFTNLPEWTTWTLLIG MACYDLVAVLCPKGPLRILVNLAQERKEPIPALVYSTAVWMGLASPDDSKNEILNVDSNP FTLSSTHGKGVKLGLGDFVFYSVLVGRCAMYDLTIVFSGSVAVLSGLFGTLILLVVFNKA LPALPISIFFGTLIYCVSRWAIVPLVTTANLYGYVA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_188280.fa Sequence name : EHI_188280 Sequence length : 396 VALUES OF COMPUTED PARAMETERS Coef20 : 2.801 CoefTot : 0.112 ChDiff : -13 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.994 3.665 0.705 1.117 MesoH : 1.786 2.186 0.273 0.761 MuHd_075 : 13.768 10.760 5.090 1.494 MuHd_095 : 3.520 6.726 2.038 2.332 MuHd_100 : 10.342 7.686 2.792 2.998 MuHd_105 : 18.583 9.442 3.860 3.510 Hmax_075 : -15.750 -2.100 -4.634 -0.595 Hmax_095 : -17.762 -7.175 -7.037 -0.613 Hmax_100 : -14.300 -5.300 -6.825 -0.520 Hmax_105 : -14.300 -5.300 -6.510 -0.770 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9981 0.0019 DFMC : 0.9946 0.0054
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 396 EHI_188280 MSDTTHYHRLKEEDDENLNKEIDTLSEQNEIHVISDEQQLSKNKVENKENKSDEEEVEMITFAEYSESVNAVITPVAITL 80 LLTVIIVKLLERSNDLYSQATSYIFSEGIESSTTIPIWLIAIIVSVIFIIMIVIVTFVFVLLFYYRCMKLIVGWLLFSVI 160 LLLMLFGGSIMKSLLSVFNWPVDWISFAFLLFNFGVLGVISIFYISPMKLNQFYMIIISVFMASFFTNLPEWTTWTLLIG 240 MACYDLVAVLCPKGPLRILVNLAQERKEPIPALVYSTAVWMGLASPDDSKNEILNVDSNPFTLSSTHGKGVKLGLGDFVF 320 YSVLVGRCAMYDLTIVFSGSVAVLSGLFGTLILLVVFNKALPALPISIFFGTLIYCVSRWAIVPLVTTANLYGYVA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_188280 9 DTTHYHR|LK 0.073 . EHI_188280 11 THYHRLK|EE 0.067 . EHI_188280 20 DDENLNK|EI 0.063 . EHI_188280 42 DEQQLSK|NK 0.056 . EHI_188280 44 QQLSKNK|VE 0.057 . EHI_188280 48 KNKVENK|EN 0.068 . EHI_188280 51 VENKENK|SD 0.116 . EHI_188280 88 LTVIIVK|LL 0.062 . EHI_188280 92 IVKLLER|SN 0.091 . EHI_188280 146 VLLFYYR|CM 0.074 . EHI_188280 149 FYYRCMK|LI 0.094 . EHI_188280 172 FGGSIMK|SL 0.074 . EHI_188280 209 FYISPMK|LN 0.055 . EHI_188280 253 VAVLCPK|GP 0.060 . EHI_188280 257 CPKGPLR|IL 0.076 . EHI_188280 266 VNLAQER|KE 0.063 . EHI_188280 267 NLAQERK|EP 0.082 . EHI_188280 290 ASPDDSK|NE 0.054 . EHI_188280 309 LSSTHGK|GV 0.153 . EHI_188280 312 THGKGVK|LG 0.056 . EHI_188280 327 YSVLVGR|CA 0.109 . EHI_188280 359 LLVVFNK|AL 0.066 . EHI_188280 379 LIYCVSR|WA 0.107 . ____________________________^_________________

  • Fasta :-

    >EHI_188280 ATGAGTGATACAACACATTACCACCGTCTTAAAGAAGAAGATGACGAAAACTTAAATAAA GAAATAGATACCCTTTCTGAACAAAACGAAATTCATGTTATTTCTGATGAACAACAACTT TCAAAAAATAAAGTAGAAAATAAAGAAAATAAAAGTGATGAAGAAGAAGTTGAAATGATC ACTTTTGCTGAATACAGTGAAAGTGTTAATGCTGTTATTACTCCTGTTGCTATTACTTTA TTATTAACTGTTATTATTGTTAAATTATTAGAAAGAAGTAATGACCTTTATTCACAAGCA ACTTCATACATATTTTCTGAAGGGATTGAATCATCAACAACTATCCCTATATGGCTTATT GCTATAATTGTATCAGTTATCTTCATTATTATGATTGTAATAGTAACTTTTGTATTTGTT CTTCTTTTTTATTATAGATGTATGAAATTAATAGTAGGATGGTTATTATTTAGTGTAATT TTATTATTAATGTTATTTGGTGGGTCAATTATGAAAAGTTTATTATCAGTATTCAATTGG CCTGTTGACTGGATTTCATTTGCTTTTCTTCTTTTTAATTTTGGTGTTCTTGGAGTCATC TCAATTTTTTATATTTCTCCAATGAAATTAAACCAATTTTATATGATTATTATCAGCGTC TTCATGGCTTCATTCTTTACAAATCTCCCAGAATGGACTACATGGACTTTACTTATTGGA ATGGCATGTTATGATTTAGTTGCTGTACTATGTCCTAAAGGACCATTAAGAATACTTGTT AACTTGGCTCAAGAACGAAAAGAACCAATTCCAGCACTTGTTTATTCCACAGCGGTATGG ATGGGATTGGCATCTCCAGATGATTCTAAGAATGAAATTCTAAATGTTGATTCAAACCCA TTCACTCTATCATCTACACATGGAAAAGGAGTAAAGTTAGGACTAGGTGATTTTGTGTTT TATAGTGTATTAGTTGGAAGGTGTGCAATGTATGACTTAACAATTGTATTTAGTGGATCA GTGGCAGTATTATCTGGACTATTTGGTACTCTCATTTTACTAGTTGTTTTTAATAAAGCT CTTCCTGCTTTACCAATTTCTATTTTCTTTGGTACTTTAATCTATTGTGTGTCACGATGG GCAATAGTTCCATTAGTCACAACTGCTAATTTATATGGTTATGTGGCTTAA
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  • Fasta :-

    MSDTTHYHRLKEEDDENLNKEIDTLSEQNEIHVISDEQQLSKNKVENKENKSDEEEVEMI TFAEYSESVNAVITPVAITLLLTVIIVKLLERSNDLYSQATSYIFSEGIESSTTIPIWLI AIIVSVIFIIMIVIVTFVFVLLFYYRCMKLIVGWLLFSVILLLMLFGGSIMKSLLSVFNW PVDWISFAFLLFNFGVLGVISIFYISPMKLNQFYMIIISVFMASFFTNLPEWTTWTLLIG MACYDLVAVLCPKGPLRILVNLAQERKEPIPALVYSTAVWMGLASPDDSKNEILNVDSNP FTLSSTHGKGVKLGLGDFVFYSVLVGRCAMYDLTIVFSGSVAVLSGLFGTLILLVVFNKA LPALPISIFFGTLIYCVSRWAIVPLVTTANLYGYVA

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IDSitePeptideScoreMethod
EHI_18828052 SKENKSDEEE0.997unsp

EHI_188280      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India