EHI_189430 | ubiquitin carboxyl-terminal hydrolase domain containing protein

_IDPredictionOTHERSPmTPCS_Position
EHI_189430OTHER0.9671550.0000730.032772
No Results

  • Fasta :-

    >EHI_189430 MSFIYRFFTRQNHKKTTKKLPNGVCGLYNLGNTCYMNCILQSIAHSKLFQNFCLTQDSLI RKDIAPGNETQYHNKISIALIALIQAMFCGDYAICTPRGIKEIMGEKNIMFKGNNQNDAS EFFLFLLDELDKEMRGTQSGIPISLPKDDLPILPIKINDHQVGIPEIAKTKIPTKPLVLE IPEKIAPNEKTEIHEGSPLIKRDEFVTIKLEEDNPLVRSVTIQETPDSEENNERNEINEQ KHEMSKEMVLTLSKNSENFLKIKDNITNDGYLQKENRIKISMGCSAFEKYVRNNQSVISE LFFGMLLKRTLCDCGNYSDNHNPFATLPIDIPLPKEVDGYFPVVFIGKEGLPKLFYIWTE IRPNMKELKERIEAKVQKKINGIWCECGKIIPVDFENVPQALDLRGARKLLAFEKIERPK LIYIQVNVRGELRRQLIPILVEKDKLKERLSVFGVEKPFNEEKVKKGWLLTFKGEEEDIE KFGRMEREEGPSQNILNPNGISLEWCLNDFFKENILGKGNEWKCSQCGKKVNARQKCIIE YPPNVLVIQLKRFRYTEHLSVVKDNSLVYFPLEIDLHQFGMVGKYRLNSVVNHRGTLNGG HYYSYCRCGSDWFVFNDDTVTRLNTNHVVTNNAFMLFYERID
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_189430.fa Sequence name : EHI_189430 Sequence length : 642 VALUES OF COMPUTED PARAMETERS Coef20 : 4.322 CoefTot : -2.462 ChDiff : 3 ZoneTo : 56 KR : 7 DE : 0 CleavSite : 16 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.206 1.841 0.298 0.671 MesoH : -0.443 0.292 -0.302 0.224 MuHd_075 : 39.229 33.970 13.189 9.186 MuHd_095 : 40.443 22.150 10.885 8.314 MuHd_100 : 39.083 24.344 11.647 8.439 MuHd_105 : 42.743 28.626 12.980 9.202 Hmax_075 : 1.100 23.700 6.871 7.012 Hmax_095 : 2.300 4.300 2.147 2.275 Hmax_100 : 14.200 17.300 2.827 5.310 Hmax_105 : 15.400 16.917 3.112 5.635 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0928 0.9072 DFMC : 0.1145 0.8855 This protein is probably imported in mitochondria. f(Ser) = 0.0536 f(Arg) = 0.0357 CMi = 0.44643 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 642 EHI_189430 MSFIYRFFTRQNHKKTTKKLPNGVCGLYNLGNTCYMNCILQSIAHSKLFQNFCLTQDSLIRKDIAPGNETQYHNKISIAL 80 IALIQAMFCGDYAICTPRGIKEIMGEKNIMFKGNNQNDASEFFLFLLDELDKEMRGTQSGIPISLPKDDLPILPIKINDH 160 QVGIPEIAKTKIPTKPLVLEIPEKIAPNEKTEIHEGSPLIKRDEFVTIKLEEDNPLVRSVTIQETPDSEENNERNEINEQ 240 KHEMSKEMVLTLSKNSENFLKIKDNITNDGYLQKENRIKISMGCSAFEKYVRNNQSVISELFFGMLLKRTLCDCGNYSDN 320 HNPFATLPIDIPLPKEVDGYFPVVFIGKEGLPKLFYIWTEIRPNMKELKERIEAKVQKKINGIWCECGKIIPVDFENVPQ 400 ALDLRGARKLLAFEKIERPKLIYIQVNVRGELRRQLIPILVEKDKLKERLSVFGVEKPFNEEKVKKGWLLTFKGEEEDIE 480 KFGRMEREEGPSQNILNPNGISLEWCLNDFFKENILGKGNEWKCSQCGKKVNARQKCIIEYPPNVLVIQLKRFRYTEHLS 560 VVKDNSLVYFPLEIDLHQFGMVGKYRLNSVVNHRGTLNGGHYYSYCRCGSDWFVFNDDTVTRLNTNHVVTNNAFMLFYER 640 ID 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_189430 6 -MSFIYR|FF 0.126 . EHI_189430 10 IYRFFTR|QN 0.118 . EHI_189430 14 FTRQNHK|KT 0.071 . EHI_189430 15 TRQNHKK|TT 0.181 . EHI_189430 18 NHKKTTK|KL 0.068 . EHI_189430 19 HKKTTKK|LP 0.091 . EHI_189430 47 QSIAHSK|LF 0.064 . EHI_189430 61 TQDSLIR|KD 0.082 . EHI_189430 62 QDSLIRK|DI 0.154 . EHI_189430 75 ETQYHNK|IS 0.067 . EHI_189430 98 YAICTPR|GI 0.114 . EHI_189430 101 CTPRGIK|EI 0.107 . EHI_189430 107 KEIMGEK|NI 0.060 . EHI_189430 112 EKNIMFK|GN 0.077 . EHI_189430 132 LLDELDK|EM 0.057 . EHI_189430 135 ELDKEMR|GT 0.102 . EHI_189430 147 IPISLPK|DD 0.081 . EHI_189430 156 LPILPIK|IN 0.070 . EHI_189430 169 GIPEIAK|TK 0.058 . EHI_189430 171 PEIAKTK|IP 0.060 . EHI_189430 175 KTKIPTK|PL 0.064 . EHI_189430 184 VLEIPEK|IA 0.064 . EHI_189430 190 KIAPNEK|TE 0.060 . EHI_189430 201 EGSPLIK|RD 0.065 . EHI_189430 202 GSPLIKR|DE 0.166 . EHI_189430 209 DEFVTIK|LE 0.058 . EHI_189430 218 EDNPLVR|SV 0.251 . EHI_189430 234 SEENNER|NE 0.096 . EHI_189430 241 NEINEQK|HE 0.069 . EHI_189430 246 QKHEMSK|EM 0.057 . EHI_189430 254 MVLTLSK|NS 0.056 . EHI_189430 261 NSENFLK|IK 0.071 . EHI_189430 263 ENFLKIK|DN 0.076 . EHI_189430 274 NDGYLQK|EN 0.070 . EHI_189430 277 YLQKENR|IK 0.092 . EHI_189430 279 QKENRIK|IS 0.063 . EHI_189430 289 GCSAFEK|YV 0.101 . EHI_189430 292 AFEKYVR|NN 0.079 . EHI_189430 308 FFGMLLK|RT 0.053 . EHI_189430 309 FGMLLKR|TL 0.171 . EHI_189430 335 IDIPLPK|EV 0.092 . EHI_189430 348 PVVFIGK|EG 0.060 . EHI_189430 353 GKEGLPK|LF 0.060 . EHI_189430 362 YIWTEIR|PN 0.086 . EHI_189430 366 EIRPNMK|EL 0.061 . EHI_189430 369 PNMKELK|ER 0.064 . EHI_189430 371 MKELKER|IE 0.110 . EHI_189430 375 KERIEAK|VQ 0.072 . EHI_189430 378 IEAKVQK|KI 0.077 . EHI_189430 379 EAKVQKK|IN 0.117 . EHI_189430 389 IWCECGK|II 0.063 . EHI_189430 405 PQALDLR|GA 0.106 . EHI_189430 408 LDLRGAR|KL 0.201 . EHI_189430 409 DLRGARK|LL 0.071 . EHI_189430 415 KLLAFEK|IE 0.063 . EHI_189430 418 AFEKIER|PK 0.070 . EHI_189430 420 EKIERPK|LI 0.071 . EHI_189430 429 YIQVNVR|GE 0.069 . EHI_189430 433 NVRGELR|RQ 0.063 . EHI_189430 434 VRGELRR|QL 0.205 . EHI_189430 443 IPILVEK|DK 0.073 . EHI_189430 445 ILVEKDK|LK 0.062 . EHI_189430 447 VEKDKLK|ER 0.060 . EHI_189430 449 KDKLKER|LS 0.077 . EHI_189430 457 SVFGVEK|PF 0.061 . EHI_189430 463 KPFNEEK|VK 0.065 . EHI_189430 465 FNEEKVK|KG 0.057 . EHI_189430 466 NEEKVKK|GW 0.114 . EHI_189430 473 GWLLTFK|GE 0.062 . EHI_189430 481 EEEDIEK|FG 0.059 . EHI_189430 484 DIEKFGR|ME 0.101 . EHI_189430 487 KFGRMER|EE 0.310 . EHI_189430 512 CLNDFFK|EN 0.072 . EHI_189430 518 KENILGK|GN 0.081 . EHI_189430 523 GKGNEWK|CS 0.071 . EHI_189430 529 KCSQCGK|KV 0.099 . EHI_189430 530 CSQCGKK|VN 0.090 . EHI_189430 534 GKKVNAR|QK 0.130 . EHI_189430 536 KVNARQK|CI 0.082 . EHI_189430 551 VLVIQLK|RF 0.066 . EHI_189430 552 LVIQLKR|FR 0.153 . EHI_189430 554 IQLKRFR|YT 0.091 . EHI_189430 563 EHLSVVK|DN 0.065 . EHI_189430 584 QFGMVGK|YR 0.064 . EHI_189430 586 GMVGKYR|LN 0.114 . EHI_189430 594 NSVVNHR|GT 0.112 . EHI_189430 607 HYYSYCR|CG 0.079 . EHI_189430 622 NDDTVTR|LN 0.085 . EHI_189430 640 FMLFYER|ID 0.069 . ____________________________^_________________

  • Fasta :-

    >EHI_189430 ATGAGCTTTATTTATCGTTTCTTCACTCGTCAAAATCATAAAAAAACAACAAAAAAATTA CCGAATGGGGTGTGTGGGTTATATAACTTAGGGAATACATGTTATATGAATTGTATTTTA CAAAGTATTGCTCATTCTAAATTATTTCAAAATTTCTGTTTAACTCAAGATAGTCTCATA CGTAAAGACATTGCACCTGGTAATGAAACACAGTATCACAATAAAATTTCTATTGCTCTT ATTGCTCTTATCCAAGCTATGTTTTGTGGTGATTATGCTATTTGTACACCTAGAGGAATT AAAGAAATTATGGGAGAAAAAAATATAATGTTTAAAGGAAATAACCAAAATGATGCGTCA GAATTCTTTTTATTTTTGTTGGATGAGCTTGATAAAGAAATGAGAGGGACTCAATCTGGA ATTCCTATCTCACTACCTAAAGACGATTTGCCTATTCTTCCCATTAAAATCAATGACCAT CAAGTTGGAATACCTGAGATTGCTAAAACAAAAATACCAACAAAACCTTTAGTATTAGAA ATTCCAGAAAAAATTGCTCCAAATGAAAAGACAGAAATTCATGAAGGATCTCCCTTAATA AAGAGAGATGAGTTTGTAACAATAAAATTAGAGGAAGATAATCCTCTTGTTCGTTCTGTA ACAATACAAGAAACACCTGACTCTGAAGAGAATAATGAAAGAAACGAAATAAATGAACAA AAACATGAAATGTCAAAAGAAATGGTATTAACACTATCAAAAAATTCAGAAAACTTTTTG AAGATAAAAGACAATATTACAAATGATGGTTATTTGCAAAAAGAAAACCGAATTAAAATA TCAATGGGTTGTAGTGCTTTTGAAAAATATGTACGAAATAATCAAAGTGTTATTAGTGAA TTATTCTTTGGTATGTTATTAAAAAGAACTCTATGTGATTGTGGTAATTATTCTGATAAT CATAATCCTTTTGCAACATTACCAATTGATATTCCTTTACCTAAGGAGGTAGATGGATAT TTTCCTGTAGTTTTTATTGGTAAAGAAGGACTTCCTAAACTCTTTTATATTTGGACTGAA ATTCGACCAAATATGAAAGAATTAAAAGAAAGGATTGAAGCAAAAGTTCAAAAAAAAATT AATGGCATTTGGTGTGAATGTGGAAAGATTATTCCTGTTGACTTTGAAAATGTTCCTCAA GCACTTGACCTTAGAGGAGCAAGAAAGTTACTTGCATTTGAAAAAATAGAAAGACCTAAA CTTATTTATATTCAGGTCAATGTTAGAGGAGAATTGAGAAGACAACTTATTCCAATACTA GTTGAGAAAGACAAATTGAAAGAACGTTTGAGTGTTTTTGGTGTTGAAAAACCTTTTAAT GAAGAAAAAGTAAAGAAGGGGTGGTTGTTAACATTCAAAGGGGAAGAAGAGGATATTGAG AAATTTGGAAGAATGGAAAGAGAAGAAGGGCCAAGCCAAAATATATTAAATCCAAATGGT ATATCATTAGAGTGGTGTTTAAATGACTTTTTTAAAGAAAATATTTTAGGTAAAGGAAAT GAATGGAAATGTAGTCAGTGTGGAAAAAAAGTTAATGCCAGACAAAAATGTATTATTGAA TATCCTCCAAATGTTCTTGTTATTCAATTAAAACGGTTTAGATACACAGAACATTTAAGT GTAGTAAAAGATAATTCTCTTGTTTATTTTCCGCTTGAAATTGATCTTCATCAATTTGGA ATGGTAGGGAAATACCGATTAAATTCTGTTGTGAATCATAGAGGGACATTAAATGGTGGA CATTATTATTCTTATTGTAGATGTGGTTCAGATTGGTTTGTTTTTAATGATGATACTGTA ACAAGGCTTAATACCAACCACGTTGTGACAAATAATGCTTTTATGTTATTTTACGAAAGA ATTGATTAA
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  • Fasta :-

    MSFIYRFFTRQNHKKTTKKLPNGVCGLYNLGNTCYMNCILQSIAHSKLFQNFCLTQDSLI RKDIAPGNETQYHNKISIALIALIQAMFCGDYAICTPRGIKEIMGEKNIMFKGNNQNDAS EFFLFLLDELDKEMRGTQSGIPISLPKDDLPILPIKINDHQVGIPEIAKTKIPTKPLVLE IPEKIAPNEKTEIHEGSPLIKRDEFVTIKLEEDNPLVRSVTIQETPDSEENNERNEINEQ KHEMSKEMVLTLSKNSENFLKIKDNITNDGYLQKENRIKISMGCSAFEKYVRNNQSVISE LFFGMLLKRTLCDCGNYSDNHNPFATLPIDIPLPKEVDGYFPVVFIGKEGLPKLFYIWTE IRPNMKELKERIEAKVQKKINGIWCECGKIIPVDFENVPQALDLRGARKLLAFEKIERPK LIYIQVNVRGELRRQLIPILVEKDKLKERLSVFGVEKPFNEEKVKKGWLLTFKGEEEDIE KFGRMEREEGPSQNILNPNGISLEWCLNDFFKENILGKGNEWKCSQCGKKVNARQKCIIE YPPNVLVIQLKRFRYTEHLSVVKDNSLVYFPLEIDLHQFGMVGKYRLNSVVNHRGTLNGG HYYSYCRCGSDWFVFNDDTVTRLNTNHVVTNNAFMLFYERID

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
EHI_189430228 SETPDSEENN0.995unspEHI_189430589 SYRLNSVVNH0.992unsp

EHI_189430      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India