EHI_200720 | signal peptidase complex subunit, putative

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  • Fasta :-

    >EHI_200720 MNKLQFSIPPIDFVGQRIVNKNISTLIPIITILGFIIGFITQNVFVMLSIYGIGLAFCLL AFGLPMPYLRANYIEWQKVGTTVSRSSKKAKNE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_200720.fa Sequence name : EHI_200720 Sequence length : 93 VALUES OF COMPUTED PARAMETERS Coef20 : 3.658 CoefTot : -3.073 ChDiff : 6 ZoneTo : 90 KR : 8 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.359 2.441 0.515 0.902 MesoH : 0.767 1.201 0.008 0.516 MuHd_075 : 39.876 26.880 11.495 9.093 MuHd_095 : 33.048 27.878 11.256 9.323 MuHd_100 : 37.522 26.433 9.433 8.612 MuHd_105 : 40.522 26.621 10.580 8.411 Hmax_075 : 18.000 23.100 4.331 7.720 Hmax_095 : 16.300 19.338 4.298 6.563 Hmax_100 : 10.900 24.900 0.756 7.980 Hmax_105 : 9.600 30.275 0.103 4.190 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4782 0.5218 DFMC : 0.4574 0.5426 This protein is probably imported in mitochondria. f(Ser) = 0.0667 f(Arg) = 0.0333 CMi = 0.57143 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 93 EHI_200720 MNKLQFSIPPIDFVGQRIVNKNISTLIPIITILGFIIGFITQNVFVMLSIYGIGLAFCLLAFGLPMPYLRANYIEWQKVG 80 TTVSRSSKKAKNE 160 ................................................................................ 80 ............. 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_200720 3 ----MNK|LQ 0.060 . EHI_200720 17 IDFVGQR|IV 0.155 . EHI_200720 21 GQRIVNK|NI 0.086 . EHI_200720 70 LPMPYLR|AN 0.088 . EHI_200720 78 NYIEWQK|VG 0.056 . EHI_200720 85 VGTTVSR|SS 0.115 . EHI_200720 88 TVSRSSK|KA 0.212 . EHI_200720 89 VSRSSKK|AK 0.122 . EHI_200720 91 RSSKKAK|NE 0.099 . ____________________________^_________________

  • Fasta :-

    >EHI_200720 ATGAACAAACTTCAATTTAGTATTCCTCCAATTGACTTTGTTGGACAAAGGATTGTTAAC AAAAATATTTCAACTCTCATTCCAATCATCACGATTCTTGGATTTATTATTGGCTTTATT ACACAAAACGTATTTGTAATGCTTTCAATCTATGGAATCGGATTAGCATTTTGTTTATTA GCATTTGGATTACCAATGCCTTATTTACGAGCAAACTATATTGAATGGCAAAAAGTTGGA ACTACAGTATCTCGTTCATCAAAGAAAGCTAAAAATGAATAA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
EHI_20072086 STVSRSSKKA0.997unspEHI_20072087 SVSRSSKKAK0.997unsp

EHI_200720      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India