ETH_00001425 | At4g25680, related

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_IDPredictionOTHERSPmTPCS_Position
ETH_00001425OTHER0.9993020.0001490.000549
No Results

  • Fasta :-

    >ETH_00001425 MEVAESVLRKRASAGIAIRTKAGLQGKWGASAWSDTALECMYRGLSLSEPKAASACESSS SQKGWGSSHSYPFLPAPRDIFGGTRSSVRGDTEVKDEWLLASPVRDVGTALARSSGKKQQ HPESEDDNEAAQQLRSQLLQLRAEGHRRAARLRRERQLLQQQLAEARQQQQVLLLRQQQR SICTSVGASQGSCDPWGPPTLSVPPPAPAVVRRGPRGGPLPPFSPRMVLLHVYDLTPAIS NYVNRIMRPLGAGAFHAGVEVYGQEYSFGQTTATAGALRHYGSATASLEPSTLWTAAATL PGAAVVLVILDTDETTGVSVCQPMQHPAHVYRETVPMGPADLGMDEFLSLVEVLKVEWPG NSYDVLSRNCVNFADHLCVLLGVGHVPPWLFRLQRQANSIKGGARAAAAAAAAAARQLQR LNTQARISATAMAAAEAAATAAAVAAGAAVSFGRFIKHAHQEVRLSEEMGRLLVEGMSFL SERFSEGVSCIPSEWNEEETTALEPLHLFDRAPTPPEGLIAESCGATSEDSAEKLSESPV EKPLEKQGDERLEELRTSSLVNPEEGTPRAPRGATEESLQGATILKSWSQGSLSSLSQDT EQQRKSPSDWPYAADAILP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00001425.fa Sequence name : ETH_00001425 Sequence length : 619 VALUES OF COMPUTED PARAMETERS Coef20 : 4.746 CoefTot : 0.000 ChDiff : -8 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.906 1.953 0.294 0.730 MesoH : 0.255 0.524 -0.173 0.315 MuHd_075 : 26.473 21.837 8.013 6.520 MuHd_095 : 20.436 15.387 6.705 4.524 MuHd_100 : 19.042 15.103 5.732 4.329 MuHd_105 : 17.742 13.226 4.461 3.568 Hmax_075 : 14.900 19.500 3.451 5.760 Hmax_095 : 5.300 13.600 0.714 4.120 Hmax_100 : 5.300 11.800 0.358 4.120 Hmax_105 : 3.325 13.500 0.347 3.027 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8063 0.1937 DFMC : 0.8862 0.1138
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 619 ETH_00001425 MEVAESVLRKRASAGIAIRTKAGLQGKWGASAWSDTALECMYRGLSLSEPKAASACESSSSQKGWGSSHSYPFLPAPRDI 80 FGGTRSSVRGDTEVKDEWLLASPVRDVGTALARSSGKKQQHPESEDDNEAAQQLRSQLLQLRAEGHRRAARLRRERQLLQ 160 QQLAEARQQQQVLLLRQQQRSICTSVGASQGSCDPWGPPTLSVPPPAPAVVRRGPRGGPLPPFSPRMVLLHVYDLTPAIS 240 NYVNRIMRPLGAGAFHAGVEVYGQEYSFGQTTATAGALRHYGSATASLEPSTLWTAAATLPGAAVVLVILDTDETTGVSV 320 CQPMQHPAHVYRETVPMGPADLGMDEFLSLVEVLKVEWPGNSYDVLSRNCVNFADHLCVLLGVGHVPPWLFRLQRQANSI 400 KGGARAAAAAAAAAARQLQRLNTQARISATAMAAAEAAATAAAVAAGAAVSFGRFIKHAHQEVRLSEEMGRLLVEGMSFL 480 SERFSEGVSCIPSEWNEEETTALEPLHLFDRAPTPPEGLIAESCGATSEDSAEKLSESPVEKPLEKQGDERLEELRTSSL 560 VNPEEGTPRAPRGATEESLQGATILKSWSQGSLSSLSQDTEQQRKSPSDWPYAADAILP 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00001425 9 VAESVLR|KR 0.069 . ETH_00001425 10 AESVLRK|RA 0.170 . ETH_00001425 11 ESVLRKR|AS 0.154 . ETH_00001425 19 SAGIAIR|TK 0.079 . ETH_00001425 21 GIAIRTK|AG 0.067 . ETH_00001425 27 KAGLQGK|WG 0.062 . ETH_00001425 43 ALECMYR|GL 0.104 . ETH_00001425 51 LSLSEPK|AA 0.089 . ETH_00001425 63 ESSSSQK|GW 0.094 . ETH_00001425 78 PFLPAPR|DI 0.124 . ETH_00001425 85 DIFGGTR|SS 0.096 . ETH_00001425 89 GTRSSVR|GD 0.099 . ETH_00001425 95 RGDTEVK|DE 0.055 . ETH_00001425 105 LLASPVR|DV 0.283 . ETH_00001425 113 VGTALAR|SS 0.175 . ETH_00001425 117 LARSSGK|KQ 0.064 . ETH_00001425 118 ARSSGKK|QQ 0.131 . ETH_00001425 135 EAAQQLR|SQ 0.114 . ETH_00001425 142 SQLLQLR|AE 0.083 . ETH_00001425 147 LRAEGHR|RA 0.091 . ETH_00001425 148 RAEGHRR|AA 0.145 . ETH_00001425 151 GHRRAAR|LR 0.195 . ETH_00001425 153 RRAARLR|RE 0.113 . ETH_00001425 154 RAARLRR|ER 0.372 . ETH_00001425 156 ARLRRER|QL 0.305 . ETH_00001425 167 QQLAEAR|QQ 0.091 . ETH_00001425 176 QQVLLLR|QQ 0.081 . ETH_00001425 180 LLRQQQR|SI 0.233 . ETH_00001425 212 PAPAVVR|RG 0.082 . ETH_00001425 213 APAVVRR|GP 0.309 . ETH_00001425 216 VVRRGPR|GG 0.152 . ETH_00001425 226 LPPFSPR|MV 0.120 . ETH_00001425 245 ISNYVNR|IM 0.128 . ETH_00001425 248 YVNRIMR|PL 0.450 . ETH_00001425 279 ATAGALR|HY 0.105 . ETH_00001425 332 HPAHVYR|ET 0.159 . ETH_00001425 355 SLVEVLK|VE 0.061 . ETH_00001425 368 SYDVLSR|NC 0.070 . ETH_00001425 392 VPPWLFR|LQ 0.082 . ETH_00001425 395 WLFRLQR|QA 0.290 . ETH_00001425 401 RQANSIK|GG 0.067 . ETH_00001425 405 SIKGGAR|AA 0.120 . ETH_00001425 416 AAAAAAR|QL 0.105 . ETH_00001425 420 AARQLQR|LN 0.101 . ETH_00001425 426 RLNTQAR|IS 0.125 . ETH_00001425 454 AAVSFGR|FI 0.126 . ETH_00001425 457 SFGRFIK|HA 0.270 . ETH_00001425 464 HAHQEVR|LS 0.114 . ETH_00001425 471 LSEEMGR|LL 0.087 . ETH_00001425 483 MSFLSER|FS 0.125 . ETH_00001425 511 PLHLFDR|AP 0.090 . ETH_00001425 534 SEDSAEK|LS 0.056 . ETH_00001425 542 SESPVEK|PL 0.099 . ETH_00001425 546 VEKPLEK|QG 0.062 . ETH_00001425 551 EKQGDER|LE 0.079 . ETH_00001425 556 ERLEELR|TS 0.083 . ETH_00001425 569 PEEGTPR|AP 0.087 . ETH_00001425 572 GTPRAPR|GA 0.357 . ETH_00001425 586 QGATILK|SW 0.095 . ETH_00001425 604 QDTEQQR|KS 0.069 . ETH_00001425 605 DTEQQRK|SP 0.106 . ____________________________^_________________

  • Fasta :-

    >ETH_00001425 ATGGAAGTCGCGGAATCTGTGCTGAGAAAGAGAGCCTCAGCAGGCATCGCCATTCGCACT AAGGCAGGGTTGCAGGGTAAGTGGGGTGCATCCGCGTGGTCGGACACGGCTCTTGAATGC ATGTACAGGGGCTTATCCCTGAGCGAGCCCAAAGCAGCCTCAGCCTGTGAAAGCTCAAGC TCTCAAAAAGGCTGGGGATCCTCCCATTCGTATCCTTTCCTGCCTGCTCCTCGTGACATA TTCGGCGGAACCCGAAGTAGCGTACGAGGGGATACCGAGGTTAAAGATGAGTGGCTGCTG GCATCTCCAGTTAGGGATGTGGGTACGGCTCTAGCACGAAGCAGCGGAAAAAAGCAACAG CATCCGGAATCTGAAGATGACAACGAAGCAGCGCAGCAGCTGAGAAGCCAGCTGCTGCAG CTGCGGGCTGAGGGCCACCGACGTGCTGCCCGTCTGCGGAGGGAGCGCCAGCTGCTGCAG CAGCAGCTAGCGGAGGCACGGCAGCAGCAACAGGTGCTATTGCTGCGTCAGCAACAGCGC AGCATTTGCACAAGTGTCGGTGCCAGCCAGGGCTCTTGTGACCCGTGGGGCCCTCCCACA TTATCAGTGCCCCCTCCTGCTCCAGCGGTTGTCCGCAGAGGTCCTCGGGGTGGCCCCTTG CCTCCCTTTTCTCCCCGGATGGTGCTGCTACACGTGTACGACCTTACGCCAGCCATATCA AATTACGTAAATCGAATTATGAGGCCTCTGGGTGCTGGAGCCTTCCATGCAGGGGTGGAA GTCTACGGACAGGAATACTCTTTTGGGCAGACGACAGCGACTGCTGGTGCTCTGAGGCAC TACGGGAGTGCAACGGCATCACTGGAGCCATCAACATTATGGACAGCTGCAGCGACGTTA CCGGGAGCAGCTGTTGTGCTTGTTATCCTGGATACAGATGAAACGACTGGCGTGAGCGTA TGCCAGCCCATGCAACACCCGGCCCATGTTTATAGAGAGACCGTACCCATGGGGCCGGCC GACTTGGGCATGGATGAGTTTCTCTCCCTTGTAGAAGTTCTGAAGGTCGAATGGCCCGGC AACTCATATGACGTTCTCAGCAGGAACTGCGTGAACTTTGCGGATCACTTGTGTGTTTTG CTGGGAGTTGGCCACGTGCCGCCATGGCTTTTTAGGCTGCAGCGACAGGCCAATTCGATT AAGGGGGGAGCACGAGCTGCTGCTGCTGCTGCCGCCGCTGCTGCTCGTCAGTTGCAACGC CTGAACACCCAAGCGCGGATCTCGGCCACCGCCATGGCAGCAGCAGAAGCTGCAGCCACA GCAGCAGCGGTGGCAGCAGGGGCAGCTGTCTCCTTTGGAAGGTTTATCAAGCACGCTCAC CAGGAGGTTCGGCTCTCCGAGGAAATGGGCCGCTTGCTAGTAGAGGGCATGAGTTTTCTA AGTGAACGCTTCTCAGAGGGAGTTTCTTGCATCCCTTCTGAATGGAATGAAGAGGAAACT ACAGCTTTAGAGCCTTTGCACTTGTTCGACAGGGCGCCAACGCCGCCTGAGGGACTTATA GCGGAATCATGCGGTGCAACTTCAGAAGACTCCGCGGAGAAGCTCTCGGAAAGCCCCGTA GAGAAGCCCTTGGAGAAGCAGGGGGATGAACGTCTAGAGGAGCTCAGAACAAGCTCTTTG GTGAACCCCGAAGAGGGAACTCCGAGAGCGCCGCGAGGTGCTACTGAAGAATCGCTTCAA GGCGCCACAATTCTCAAGAGCTGGTCACAAGGATCACTTTCATCTCTTAGTCAGGATACA GAGCAGCAACGTAAATCACCGTCTGACTGGCCCTATGCTGCCGACGCCATTTTGCCTTAA
  • Download Fasta

  • Fasta :-

    MEVAESVLRKRASAGIAIRTKAGLQGKWGASAWSDTALECMYRGLSLSEPKAASACESSS SQKGWGSSHSYPFLPAPRDIFGGTRSSVRGDTEVKDEWLLASPVRDVGTALARSSGKKQQ HPESEDDNEAAQQLRSQLLQLRAEGHRRAARLRRERQLLQQQLAEARQQQQVLLLRQQQR SICTSVGASQGSCDPWGPPTLSVPPPAPAVVRRGPRGGPLPPFSPRMVLLHVYDLTPAIS NYVNRIMRPLGAGAFHAGVEVYGQEYSFGQTTATAGALRHYGSATASLEPSTLWTAAATL PGAAVVLVILDTDETTGVSVCQPMQHPAHVYRETVPMGPADLGMDEFLSLVEVLKVEWPG NSYDVLSRNCVNFADHLCVLLGVGHVPPWLFRLQRQANSIKGGARAAAAAAAAAARQLQR LNTQARISATAMAAAEAAATAAAVAAGAAVSFGRFIKHAHQEVRLSEEMGRLLVEGMSFL SERFSEGVSCIPSEWNEEETTALEPLHLFDRAPTPPEGLIAESCGATSEDSAEKLSESPV EKPLEKQGDERLEELRTSSLVNPEEGTPRAPRGATEESLQGATILKSWSQGSLSSLSQDT EQQRKSPSDWPYAADAILP

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
ETH_00001425115 SLARSSGKKQ0.995unspETH_00001425115 SLARSSGKKQ0.995unspETH_00001425115 SLARSSGKKQ0.995unspETH_00001425124 SQHPESEDDN0.997unspETH_00001425466 SEVRLSEEMG0.997unspETH_00001425538 SKLSESPVEK0.995unspETH_00001425567 TPEEGTPRAP0.992unspETH_00001425606 SQQRKSPSDW0.998unspETH_0000142546 SYRGLSLSEP0.997unspETH_0000142587 SGTRSSVRGD0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India