ETH_00003860 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004222      

  • Computed_GO_Functions:  metalloendopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
ETH_00003860OTHER0.9999520.0000140.000033
No Results

  • Fasta :-

    >ETH_00003860 MQARLLDLQELKVLAHELGHAFKEMLQEDADAFVKERPLDFDETFALLNEHILRQPEFLM SLSKHKDKNSPLTLAHASNLGFDLLDLLHPNSLFVAAAVDYAVHTLDAATATTDTLERTI KAAIEAAYSGALVCYVLAEARALRILQQLEKQHLQKQHKGNRGKNSTRSNKGMAAADLTP VRFSLFPLHPKQAMKPLMADIDATAATLVNAYCEPKRI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00003860.fa Sequence name : ETH_00003860 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 3.488 CoefTot : 0.365 ChDiff : -2 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.029 1.559 0.229 0.582 MesoH : -0.232 0.658 -0.258 0.296 MuHd_075 : 18.390 11.335 6.069 2.770 MuHd_095 : 5.868 8.847 4.020 3.328 MuHd_100 : 7.142 9.815 3.658 1.558 MuHd_105 : 16.917 12.593 4.183 2.062 Hmax_075 : 6.067 13.533 -0.198 4.457 Hmax_095 : -2.625 10.325 -1.504 3.500 Hmax_100 : -5.300 9.000 -2.293 1.620 Hmax_105 : -4.637 9.537 -1.887 1.978 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9609 0.0391 DFMC : 0.9566 0.0434
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 ETH_00003860 MQARLLDLQELKVLAHELGHAFKEMLQEDADAFVKERPLDFDETFALLNEHILRQPEFLMSLSKHKDKNSPLTLAHASNL 80 GFDLLDLLHPNSLFVAAAVDYAVHTLDAATATTDTLERTIKAAIEAAYSGALVCYVLAEARALRILQQLEKQHLQKQHKG 160 NRGKNSTRSNKGMAAADLTPVRFSLFPLHPKQAMKPLMADIDATAATLVNAYCEPKRI 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00003860 4 ---MQAR|LL 0.118 . ETH_00003860 12 LDLQELK|VL 0.062 . ETH_00003860 23 ELGHAFK|EM 0.065 . ETH_00003860 35 DADAFVK|ER 0.052 . ETH_00003860 37 DAFVKER|PL 0.095 . ETH_00003860 54 LNEHILR|QP 0.084 . ETH_00003860 64 FLMSLSK|HK 0.063 . ETH_00003860 66 MSLSKHK|DK 0.070 . ETH_00003860 68 LSKHKDK|NS 0.066 . ETH_00003860 118 TTDTLER|TI 0.096 . ETH_00003860 121 TLERTIK|AA 0.172 . ETH_00003860 141 YVLAEAR|AL 0.084 . ETH_00003860 144 AEARALR|IL 0.299 . ETH_00003860 151 ILQQLEK|QH 0.062 . ETH_00003860 156 EKQHLQK|QH 0.064 . ETH_00003860 159 HLQKQHK|GN 0.087 . ETH_00003860 162 KQHKGNR|GK 0.099 . ETH_00003860 164 HKGNRGK|NS 0.074 . ETH_00003860 168 RGKNSTR|SN 0.124 . ETH_00003860 171 NSTRSNK|GM 0.143 . ETH_00003860 182 ADLTPVR|FS 0.075 . ETH_00003860 191 LFPLHPK|QA 0.070 . ETH_00003860 195 HPKQAMK|PL 0.078 . ETH_00003860 216 NAYCEPK|RI 0.066 . ETH_00003860 217 AYCEPKR|I- 0.149 . ____________________________^_________________

  • Fasta :-

    >ETH_00003860 ATGCAAGCGAGGTTACTGGACCTGCAAGAACTGAAGGTGTTGGCCCACGAGCTGGGCCAC GCCTTTAAGGAAATGCTGCAAGAAGACGCCGACGCGTTTGTCAAGGAGCGGCCACTCGAC TTCGACGAAACGTTTGCTCTCCTCAACGAGCACATACTGCGGCAACCAGAATTCTTGATG AGCTTGTCGAAGCACAAAGACAAGAACAGCCCCCTAACCCTAGCGCATGCATCGAACTTG GGCTTCGACCTATTGGATTTACTGCATCCCAATTCTCTTTTTGTCGCTGCTGCAGTTGAC TATGCTGTCCATACATTGGACGCAGCAACAGCAACTACAGATACCCTAGAGCGCACTATC AAAGCTGCTATTGAAGCGGCATACTCGGGCGCTTTGGTGTGTTACGTATTGGCTGAAGCA AGGGCTCTACGGATACTGCAGCAGCTTGAGAAGCAGCACCTCCAGAAGCAGCACAAGGGA AACAGAGGGAAAAACTCGACCCGCAGCAACAAGGGGATGGCAGCAGCCGATCTTACGCCT GTTCGCTTTTCTCTTTTTCCCCTCCACCCGAAACAAGCTATGAAGCCTCTCATGGCTGAC ATTGATGCTACAGCAGCTACGCTGGTCAATGCTTACTGCGAACCTAAACGCATATAA
  • Download Fasta

  • Fasta :-

    MQARLLDLQELKVLAHELGHAFKEMLQEDADAFVKERPLDFDETFALLNEHILRQPEFLM SLSKHKDKNSPLTLAHASNLGFDLLDLLHPNSLFVAAAVDYAVHTLDAATATTDTLERTI KAAIEAAYSGALVCYVLAEARALRILQQLEKQHLQKQHKGNRGKNSTRSNKGMAAADLTP VRFSLFPLHPKQAMKPLMADIDATAATLVNAYCEPKRI

  • title: Zn binding site
  • coordinates: H16,H20,E43
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India