ETH_00005495 | Reverse transcriptase, related

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_IDPredictionOTHERSPmTPCS_Position
ETH_00005495OTHER0.9640080.0008380.035154
No Results

  • Fasta :-

    >ETH_00005495 MMRAVATGPNAIPVSHELGNQLLRTAGGAYKSDERAEGTQLFPETQRESGSESILSEETP DATINSSRKSAETIEDGCRSDAREIVPHWWRETCTKESYDQAGALCCAGATAVLRVELAG SPCEALLDTAASRSFISFKIVERLPLKVRRLPKEHRFTIATVGTVPYDVVLGLDWLTEHK VAWYFQSNKLRTYVNGQWCESKAKARITSLVRQAAADTNDLRTPLHGLHLILALPEACSA VPLRLSDEWQGALCCASIGNQPTSFGCRSPLASIASVAAESDEESPWPTAKLEHTLFDEW INSTAAQDIPCEIVQVVHEYRGVFPDNVCKGLPPKGPHDHHILLVPGKFPAKSAI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00005495.fa Sequence name : ETH_00005495 Sequence length : 355 VALUES OF COMPUTED PARAMETERS Coef20 : 3.597 CoefTot : -1.106 ChDiff : -8 ZoneTo : 32 KR : 3 DE : 1 CleavSite : 26 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.171 1.441 0.228 0.595 MesoH : -0.368 0.480 -0.246 0.198 MuHd_075 : 19.604 21.009 8.655 6.292 MuHd_095 : 38.466 27.280 11.452 8.490 MuHd_100 : 41.961 27.331 12.004 8.271 MuHd_105 : 40.104 24.945 11.537 7.680 Hmax_075 : 15.167 17.267 3.395 5.833 Hmax_095 : 11.813 15.750 2.198 4.883 Hmax_100 : 11.600 14.500 2.299 5.140 Hmax_105 : 7.400 14.900 2.935 5.140 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6753 0.3247 DFMC : 0.8400 0.1600
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 355 ETH_00005495 MMRAVATGPNAIPVSHELGNQLLRTAGGAYKSDERAEGTQLFPETQRESGSESILSEETPDATINSSRKSAETIEDGCRS 80 DAREIVPHWWRETCTKESYDQAGALCCAGATAVLRVELAGSPCEALLDTAASRSFISFKIVERLPLKVRRLPKEHRFTIA 160 TVGTVPYDVVLGLDWLTEHKVAWYFQSNKLRTYVNGQWCESKAKARITSLVRQAAADTNDLRTPLHGLHLILALPEACSA 240 VPLRLSDEWQGALCCASIGNQPTSFGCRSPLASIASVAAESDEESPWPTAKLEHTLFDEWINSTAAQDIPCEIVQVVHEY 320 RGVFPDNVCKGLPPKGPHDHHILLVPGKFPAKSAI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00005495 3 ----MMR|AV 0.163 . ETH_00005495 24 LGNQLLR|TA 0.125 . ETH_00005495 31 TAGGAYK|SD 0.110 . ETH_00005495 35 AYKSDER|AE 0.092 . ETH_00005495 47 LFPETQR|ES 0.078 . ETH_00005495 68 ATINSSR|KS 0.087 . ETH_00005495 69 TINSSRK|SA 0.354 . ETH_00005495 79 TIEDGCR|SD 0.097 . ETH_00005495 83 GCRSDAR|EI 0.103 . ETH_00005495 91 IVPHWWR|ET 0.107 . ETH_00005495 96 WRETCTK|ES 0.074 . ETH_00005495 115 GATAVLR|VE 0.074 . ETH_00005495 133 LDTAASR|SF 0.093 . ETH_00005495 139 RSFISFK|IV 0.088 . ETH_00005495 143 SFKIVER|LP 0.075 . ETH_00005495 147 VERLPLK|VR 0.052 . ETH_00005495 149 RLPLKVR|RL 0.078 . ETH_00005495 150 LPLKVRR|LP 0.146 . ETH_00005495 153 KVRRLPK|EH 0.139 . ETH_00005495 156 RLPKEHR|FT 0.122 . ETH_00005495 180 DWLTEHK|VA 0.058 . ETH_00005495 189 WYFQSNK|LR 0.058 . ETH_00005495 191 FQSNKLR|TY 0.131 . ETH_00005495 202 GQWCESK|AK 0.066 . ETH_00005495 204 WCESKAK|AR 0.069 . ETH_00005495 206 ESKAKAR|IT 0.138 . ETH_00005495 212 RITSLVR|QA 0.081 . ETH_00005495 222 ADTNDLR|TP 0.079 . ETH_00005495 244 CSAVPLR|LS 0.116 . ETH_00005495 268 PTSFGCR|SP 0.139 . ETH_00005495 291 SPWPTAK|LE 0.073 . ETH_00005495 321 QVVHEYR|GV 0.128 . ETH_00005495 330 FPDNVCK|GL 0.073 . ETH_00005495 335 CKGLPPK|GP 0.069 . ETH_00005495 348 ILLVPGK|FP 0.065 . ETH_00005495 352 PGKFPAK|SA 0.096 . ____________________________^_________________

  • Fasta :-

    >ETH_00005495 ATGATGCGTGCGGTAGCGACAGGCCCTAACGCCATTCCAGTCTCCCACGAGTTGGGAAAC CAACTCCTCCGCACTGCGGGAGGAGCTTATAAGAGCGATGAGCGCGCGGAAGGGACTCAG CTGTTTCCGGAAACGCAGCGTGAGTCTGGGTCAGAGTCGATCCTGAGTGAAGAGACTCCG GACGCGACGATAAATAGCAGCAGGAAGTCTGCGGAGACAATAGAAGACGGCTGTAGGTCA GACGCGAGAGAGATTGTCCCACACTGGTGGAGGGAGACTTGCACGAAAGAGTCTTACGAT CAAGCGGGAGCGTTGTGTTGTGCGGGCGCGACGGCGGTACTTCGCGTTGAGCTCGCAGGG AGCCCTTGTGAGGCCCTGTTGGACACTGCGGCTTCGAGAAGTTTCATTAGTTTTAAAATA GTCGAACGACTGCCTCTGAAAGTGCGGAGACTACCAAAAGAACATAGGTTCACCATTGCT ACAGTGGGAACCGTTCCCTACGACGTAGTCTTGGGTTTGGATTGGCTGACGGAACACAAG GTGGCCTGGTATTTCCAATCAAACAAGCTCCGAACCTATGTGAATGGCCAGTGGTGCGAG TCTAAGGCGAAGGCGCGGATAACGTCGCTGGTTCGTCAGGCAGCGGCCGACACAAATGAT CTCAGGACTCCATTGCACGGTTTGCATCTCATACTGGCTTTGCCCGAAGCCTGTTCGGCA GTGCCCTTAAGGCTCTCGGATGAATGGCAAGGCGCGCTTTGTTGCGCGTCGATTGGGAAT CAACCCACGTCCTTCGGCTGCCGTAGTCCTTTGGCCTCAATCGCTTCGGTGGCAGCGGAG AGTGACGAGGAGTCTCCTTGGCCTACGGCAAAACTCGAGCACACTCTATTCGACGAATGG ATAAATTCGACAGCGGCGCAGGATATTCCATGTGAGATTGTCCAGGTGGTGCACGAGTAT CGAGGGGTCTTTCCGGATAACGTATGTAAGGGATTACCGCCGAAGGGCCCTCATGATCAC CATATCCTACTTGTACCTGGAAAATTTCCAGCAAAATCTGCAATATAA
  • Download Fasta

  • Fasta :-

    MMRAVATGPNAIPVSHELGNQLLRTAGGAYKSDERAEGTQLFPETQRESGSESILSEETP DATINSSRKSAETIEDGCRSDAREIVPHWWRETCTKESYDQAGALCCAGATAVLRVELAG SPCEALLDTAASRSFISFKIVERLPLKVRRLPKEHRFTIATVGTVPYDVVLGLDWLTEHK VAWYFQSNKLRTYVNGQWCESKAKARITSLVRQAAADTNDLRTPLHGLHLILALPEACSA VPLRLSDEWQGALCCASIGNQPTSFGCRSPLASIASVAAESDEESPWPTAKLEHTLFDEW INSTAAQDIPCEIVQVVHEYRGVFPDNVCKGLPPKGPHDHHILLVPGKFPAKSAI

  • title: inhibitor binding site
  • coordinates: D128,A130,S132,F157,T158,I159,V170
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
ETH_0000549570 SSSRKSAETI0.996unspETH_0000549570 SSSRKSAETI0.996unspETH_0000549570 SSSRKSAETI0.996unspETH_00005495281 SVAAESDEES0.997unspETH_0000549532 SGAYKSDERA0.992unspETH_0000549549 STQRESGSES0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India