ETH_00006275 | hypothetical protein, conserved

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No Results
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  • Fasta :-

    >ETH_00006275 MPALKRFLFFSGFCFSLLASQPTCGAPRPAAARVASQQQQQQQQQELLQQQRLRQQRELL QQHPQQKELSQLQQLQQEPLQQQHYQQDILQQELLQQELLAEQHQQQELLQQEQQEQEQE QLVLLQQQQLQQQQLEQELQQQQQQQVEGEICSGEDVGFQGSGVRTPEVWGAAANEFPEV LDLFEVKETEKEDSEEAKRVKETEKENETSFSKKEKMKENEMGAAAGLQFAEASRFGPLA QYMQYLSTFTPGEQQQQQLQQLQQLQQLQQLLQQQQQQQLPQGAAAALKKLQRRAQAAAY ANSVTSHPLLQGLIRSAVAAAAETLSSITLADLAAAATLPLPPIV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00006275.fa Sequence name : ETH_00006275 Sequence length : 345 VALUES OF COMPUTED PARAMETERS Coef20 : 4.727 CoefTot : -0.847 ChDiff : -16 ZoneTo : 45 KR : 4 DE : 0 CleavSite : 35 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.776 1.465 0.289 0.568 MesoH : -0.348 0.357 -0.333 0.179 MuHd_075 : 36.053 23.935 9.311 7.951 MuHd_095 : 22.825 15.894 6.619 5.558 MuHd_100 : 19.291 15.759 6.575 4.587 MuHd_105 : 21.590 18.661 7.047 4.911 Hmax_075 : 3.383 24.267 -1.009 1.692 Hmax_095 : 10.000 9.538 2.408 3.736 Hmax_100 : 19.800 18.700 4.410 6.140 Hmax_105 : 20.417 20.417 4.869 6.545 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1442 0.8558 DFMC : 0.0565 0.9435 This protein is probably imported in mitochondria. f(Ser) = 0.0889 f(Arg) = 0.0667 CMi = 0.54422 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 345 ETH_00006275 MPALKRFLFFSGFCFSLLASQPTCGAPRPAAARVASQQQQQQQQQELLQQQRLRQQRELLQQHPQQKELSQLQQLQQEPL 80 QQQHYQQDILQQELLQQELLAEQHQQQELLQQEQQEQEQEQLVLLQQQQLQQQQLEQELQQQQQQQVEGEICSGEDVGFQ 160 GSGVRTPEVWGAAANEFPEVLDLFEVKETEKEDSEEAKRVKETEKENETSFSKKEKMKENEMGAAAGLQFAEASRFGPLA 240 QYMQYLSTFTPGEQQQQQLQQLQQLQQLQQLLQQQQQQQLPQGAAAALKKLQRRAQAAAYANSVTSHPLLQGLIRSAVAA 320 AAETLSSITLADLAAAATLPLPPIV 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00006275 5 --MPALK|RF 0.050 . ETH_00006275 6 -MPALKR|FL 0.199 . ETH_00006275 28 PTCGAPR|PA 0.095 . ETH_00006275 33 PRPAAAR|VA 0.184 . ETH_00006275 52 ELLQQQR|LR 0.073 . ETH_00006275 54 LQQQRLR|QQ 0.111 . ETH_00006275 57 QRLRQQR|EL 0.378 . ETH_00006275 67 QQHPQQK|EL 0.083 . ETH_00006275 165 FQGSGVR|TP 0.075 . ETH_00006275 187 LDLFEVK|ET 0.070 . ETH_00006275 191 EVKETEK|ED 0.058 . ETH_00006275 198 EDSEEAK|RV 0.100 . ETH_00006275 199 DSEEAKR|VK 0.147 . ETH_00006275 201 EEAKRVK|ET 0.081 . ETH_00006275 205 RVKETEK|EN 0.069 . ETH_00006275 213 NETSFSK|KE 0.057 . ETH_00006275 214 ETSFSKK|EK 0.176 . ETH_00006275 216 SFSKKEK|MK 0.103 . ETH_00006275 218 SKKEKMK|EN 0.086 . ETH_00006275 235 QFAEASR|FG 0.079 . ETH_00006275 289 GAAAALK|KL 0.060 . ETH_00006275 290 AAAALKK|LQ 0.103 . ETH_00006275 293 ALKKLQR|RA 0.093 . ETH_00006275 294 LKKLQRR|AQ 0.154 . ETH_00006275 315 LLQGLIR|SA 0.152 . ____________________________^_________________

  • Fasta :-

    >ETH_00006275 ATGCCGGCATTAAAACGATTCCTTTTCTTTTCGGGCTTTTGCTTCTCTCTTCTTGCCTCT CAGCCCACTTGCGGAGCCCCCCGACCGGCAGCAGCTCGCGTAGCCTCGCAGCAGCAGCAG CAGCAACAGCAGCAGGAGCTGCTGCAGCAGCAGCGGCTGCGACAGCAGCGCGAGTTACTG CAGCAGCACCCGCAGCAGAAGGAGCTATCGCAGCTGCAGCAACTGCAGCAGGAGCCCCTA CAGCAGCAGCATTACCAGCAAGACATTCTGCAGCAAGAGCTACTGCAGCAGGAGCTTCTG GCGGAGCAGCATCAGCAGCAGGAGCTGCTGCAGCAGGAGCAGCAAGAGCAAGAGCAAGAG CAGCTCGTGCTGCTGCAGCAGCAGCAACTGCAGCAGCAGCAACTGGAGCAGGAGCTTCAG CAGCAGCAGCAGCAGCAGGTGGAGGGGGAGATTTGCTCGGGCGAGGATGTGGGGTTTCAA GGTTCAGGTGTACGTACACCTGAAGTGTGGGGTGCTGCAGCAAATGAGTTTCCGGAAGTT TTGGATTTATTTGAAGTAAAAGAAACAGAAAAAGAAGACTCGGAAGAAGCAAAAAGAGTA AAAGAAACGGAAAAAGAAAACGAAACTTCTTTTTCAAAAAAAGAAAAAATGAAAGAAAAC GAAATGGGCGCTGCAGCGGGACTCCAATTCGCTGAGGCCTCCCGCTTCGGGCCTTTGGCT CAGTACATGCAGTACTTGTCAACGTTCACTCCTGGGGAGCAGCAGCAGCAGCAGCTGCAG CAGCTGCAGCAGCTGCAGCAGCTGCAGCAGCTGCTGCAGCAGCAGCAGCAGCAGCAGCTG CCCCAGGGAGCAGCAGCAGCACTCAAGAAACTCCAAAGAAGAGCACAAGCAGCAGCTTAT GCAAACTCCGTCACTTCTCATCCGCTGCTGCAGGGCCTCATTCGTTCTGCTGTTGCTGCA GCAGCAGAAACCCTCAGCAGCATCACTCTCGCTGATCTTGCTGCTGCAGCAACACTCCCC CTGCCCCCAATCGTCTAA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
ETH_00006275194 SEKEDSEEAK0.997unspETH_00006275212 SETSFSKKEK0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India