ETH_00016670 | proteasome subunit alpha type 6, putative

UniProt_ID:

Computed_GO_Component_IDs: GO:0005839
Computed_GO_Components: proteasome core complex
Computed_GO_Function_IDs: GO:0004298
Computed_GO_Functions: threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	ETH_00016670	OTHER	0.999991	0.000008	0.000000

No Results

Fasta :-
>ETH_00016670 MENSSSATWILQPPSPAAAPAAEAAAAAADTECSRSFLRNRSAFSTAAAFSSSSTHSSSW RCQASAATRALNFPRTTAFLLQQQQQQPNPALQQQQAPQQLGLAVPLPLPSLGSNNLPRL SKTAAAAAAAAAAAAASSLARPVAQQPQRSRTTPRIPRSSSRTAAAAATTAAAAAAAAAK WLGVRGRQLQHKVQQQQQQQDKLLDRSSVSSLHRLSSSSGCCLVGLQADCRSAAAAAAAE AANFNFKYGIQISPRALAARLADLNQVYTQFAYMRLHACTGIVVGMDEEEGPQLFKFDPA GFVAGFRACAAGAKEQEANSLLEKLLKKKNSETPEQVARLAITALQQVLASDLKAEDIEV GIVSKSDPSFRLLSEQEIEAHLTAIAEQD
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00016670.fa Sequence name : ETH_00016670 Sequence length : 389 VALUES OF COMPUTED PARAMETERS Coef20 : 3.693 CoefTot : -0.118 ChDiff : 8 ZoneTo : 22 KR : 0 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.553 1.612 0.243 0.554 MesoH : -0.301 0.439 -0.241 0.198 MuHd_075 : 17.036 10.462 5.182 2.616 MuHd_095 : 10.403 17.320 4.778 3.700 MuHd_100 : 12.192 16.877 4.699 3.520 MuHd_105 : 17.589 16.769 6.166 3.582 Hmax_075 : 10.850 9.100 1.755 3.210 Hmax_095 : 11.112 11.463 1.831 4.305 Hmax_100 : 11.800 13.900 0.972 5.100 Hmax_105 : 11.400 11.300 1.825 4.300 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9891 0.0109 DFMC : 0.9787 0.0213

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 389 ETH_00016670 MENSSSATWILQPPSPAAAPAAEAAAAAADTECSRSFLRNRSAFSTAAAFSSSSTHSSSWRCQASAATRALNFPRTTAFL 80 LQQQQQQPNPALQQQQAPQQLGLAVPLPLPSLGSNNLPRLSKTAAAAAAAAAAAAASSLARPVAQQPQRSRTTPRIPRSS 160 SRTAAAAATTAAAAAAAAAKWLGVRGRQLQHKVQQQQQQQDKLLDRSSVSSLHRLSSSSGCCLVGLQADCRSAAAAAAAE 240 AANFNFKYGIQISPRALAARLADLNQVYTQFAYMRLHACTGIVVGMDEEEGPQLFKFDPAGFVAGFRACAAGAKEQEANS 320 LLEKLLKKKNSETPEQVARLAITALQQVLASDLKAEDIEVGIVSKSDPSFRLLSEQEIEAHLTAIAEQD 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ..................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00016670 35 ADTECSR|SF 0.092 . ETH_00016670 39 CSRSFLR|NR 0.081 . ETH_00016670 41 RSFLRNR|SA 0.151 . ETH_00016670 61 THSSSWR|CQ 0.106 . ETH_00016670 69 QASAATR|AL 0.103 . ETH_00016670 75 RALNFPR|TT 0.099 . ETH_00016670 119 GSNNLPR|LS 0.111 . ETH_00016670 122 NLPRLSK|TA 0.132 . ETH_00016670 141 AASSLAR|PV 0.183 . ETH_00016670 149 VAQQPQR|SR 0.100 . ETH_00016670 151 QQPQRSR|TT 0.091 . ETH_00016670 155 RSRTTPR|IP 0.105 . ETH_00016670 158 TTPRIPR|SS 0.406 . ETH_00016670 162 IPRSSSR|TA 0.146 . ETH_00016670 180 AAAAAAK|WL 0.089 . ETH_00016670 185 AKWLGVR|GR 0.073 . ETH_00016670 187 WLGVRGR|QL 0.131 . ETH_00016670 192 GRQLQHK|VQ 0.083 . ETH_00016670 202 QQQQQDK|LL 0.069 . ETH_00016670 206 QDKLLDR|SS 0.116 . ETH_00016670 214 SVSSLHR|LS 0.108 . ETH_00016670 231 GLQADCR|SA 0.161 . ETH_00016670 247 AANFNFK|YG 0.073 . ETH_00016670 255 GIQISPR|AL 0.112 . ETH_00016670 260 PRALAAR|LA 0.135 . ETH_00016670 275 TQFAYMR|LH 0.081 . ETH_00016670 296 EGPQLFK|FD 0.064 . ETH_00016670 307 GFVAGFR|AC 0.088 . ETH_00016670 314 ACAAGAK|EQ 0.063 . ETH_00016670 324 ANSLLEK|LL 0.067 . ETH_00016670 327 LLEKLLK|KK 0.061 . ETH_00016670 328 LEKLLKK|KN 0.097 . ETH_00016670 329 EKLLKKK|NS 0.100 . ETH_00016670 339 TPEQVAR|LA 0.169 . ETH_00016670 354 VLASDLK|AE 0.061 . ETH_00016670 365 EVGIVSK|SD 0.065 . ETH_00016670 371 KSDPSFR|LL 0.139 . ____________________________^_________________

Fasta :-
>ETH_00016670 ATGGAGAACAGCAGCAGCGCGACTTGGATTCTCCAGCCGCCTTCTCCTGCTGCAGCACCA GCAGCAGAAGCAGCAGCAGCAGCAGCAGACACGGAGTGCAGCCGCAGCTTCCTCAGGAAT CGCTCCGCATTCAGCACTGCAGCAGCATTCAGCAGCAGCAGCACACACTCCAGCAGCTGG CGGTGTCAGGCGTCTGCAGCGACGCGAGCGCTTAATTTCCCACGCACAACAGCGTTCTTG CTGCAGCAGCAGCAGCAGCAACCTAATCCCGCGCTGCAGCAGCAGCAGGCGCCGCAGCAG CTCGGCCTCGCCGTCCCGCTTCCGCTTCCCTCCCTCGGCAGCAACAACCTCCCCCGTCTC TCCAAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCGTCCCTCGCC CGACCCGTAGCCCAGCAGCCGCAGCGCAGCCGCACCACCCCCCGCATCCCCCGCAGCAGC AGCAGAACCGCCGCCGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAA TGGCTCGGGGTTCGGGGCAGGCAATTGCAGCACAAGGTGCAGCAGCAGCAGCAGCAGCAA GACAAGCTGCTGGACCGGAGCTCGGTGAGCTCGCTGCACCGGCTCAGCAGCAGCAGCGGC TGCTGCCTCGTGGGCCTCCAGGCGGACTGCAGATCTGCTGCTGCTGCTGCTGCAGCAGAA GCAGCAAACTTCAACTTCAAATATGGAATTCAAATTTCCCCAAGAGCCCTTGCTGCTAGA CTAGCAGACCTCAACCAGGTGTACACGCAGTTCGCCTACATGCGCCTCCACGCATGCACG GGGATCGTGGTGGGGATGGACGAGGAGGAGGGCCCGCAGCTCTTCAAGTTCGACCCCGCA GGGTTTGTGGCAGGGTTTAGGGCTTGTGCTGCTGGCGCCAAAGAGCAGGAAGCAAATAGT CTTTTGGAAAAACTTTTGAAAAAGAAAAACTCCGAAACCCCCGAACAAGTCGCCAGACTC GCCATCACGGCTCTGCAGCAGGTGTTGGCTTCGGACTTGAAGGCGGAAGACATTGAGGTT GGGATCGTGTCGAAAAGCGATCCCAGCTTTCGGCTGCTGTCTGAACAGGAGATAGAGGCG CACTTGACGGCCATTGCGGAGCAAGACTAA
Download Fasta

Fasta :-

MENSSSATWILQPPSPAAAPAAEAAAAAADTECSRSFLRNRSAFSTAAAFSSSSTHSSSW RCQASAATRALNFPRTTAFLLQQQQQQPNPALQQQQAPQQLGLAVPLPLPSLGSNNLPRL SKTAAAAAAAAAAAAASSLARPVAQQPQRSRTTPRIPRSSSRTAAAAATTAAAAAAAAAK WLGVRGRQLQHKVQQQQQQQDKLLDRSSVSSLHRLSSSSGCCLVGLQADCRSAAAAAAAE AANFNFKYGIQISPRALAARLADLNQVYTQFAYMRLHACTGIVVGMDEEEGPQLFKFDPA GFVAGFRACAAGAKEQEANSLLEKLLKKKNSETPEQVARLAITALQQVLASDLKAEDIEV GIVSKSDPSFRLLSEQEIEAHLTAIAEQD

Proteasome subunits

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	ETH_00016670	160 S	IPRSSSRTA	0.995	unsp	ETH_00016670	160 S	IPRSSSRTA	0.995	unsp	ETH_00016670	160 S	IPRSSSRTA	0.995	unsp	ETH_00016670	161 S	PRSSSRTAA	0.99	unsp	ETH_00016670	216 S	LHRLSSSSG	0.992	unsp	ETH_00016670	59 S	THSSSWRCQ	0.994	unsp	ETH_00016670	153 T	RSRTTPRIP	0.995	unsp

ETH_00016670 | proteasome subunit alpha type 6, putative

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005839

Computed_GO_Components: proteasome core complex

Computed_GO_Function_IDs: GO:0004298

Computed_GO_Functions: threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India