ETH_00016860 | 26S proteasome regulatory subunit, putative

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_IDPredictionOTHERSPmTPCS_Position
ETH_00016860OTHER0.8525200.0015910.145890
No Results

  • Fasta :-

    >ETH_00016860 MFKKVNTMERILGWYSTGTAAKPQDLQIHEIFRKHTPNPFYLLVDVEPKDMVVPAKAYCT IEEPTNSKAFRKSFVYVPCTIGAYEAEEVGVEHLLRDTKNASTSTLATKVEDKLETMKIL ARKLKDVADYLNDVAAEKLRANPTIIYTVQEIFNLLPDTSRPELVKAFATQTNDSMMTLY LASVVRSVLALHNLIDNKIRNKRDAELKEKESATAEEEKHKKAEAETRA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00016860.fa Sequence name : ETH_00016860 Sequence length : 229 VALUES OF COMPUTED PARAMETERS Coef20 : 4.093 CoefTot : -1.120 ChDiff : 0 ZoneTo : 24 KR : 4 DE : 1 CleavSite : 20 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.118 1.547 0.111 0.451 MesoH : -0.964 0.231 -0.492 0.128 MuHd_075 : 24.668 16.437 7.170 3.536 MuHd_095 : 24.985 17.155 7.401 4.834 MuHd_100 : 25.448 19.713 7.029 6.030 MuHd_105 : 31.652 22.763 8.194 8.103 Hmax_075 : 13.067 12.133 1.839 2.870 Hmax_095 : 12.000 9.200 1.409 3.790 Hmax_100 : 8.300 11.100 -0.494 3.760 Hmax_105 : 7.000 9.800 -0.785 4.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9056 0.0944 DFMC : 0.8637 0.1363
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 229 ETH_00016860 MFKKVNTMERILGWYSTGTAAKPQDLQIHEIFRKHTPNPFYLLVDVEPKDMVVPAKAYCTIEEPTNSKAFRKSFVYVPCT 80 IGAYEAEEVGVEHLLRDTKNASTSTLATKVEDKLETMKILARKLKDVADYLNDVAAEKLRANPTIIYTVQEIFNLLPDTS 160 RPELVKAFATQTNDSMMTLYLASVVRSVLALHNLIDNKIRNKRDAELKEKESATAEEEKHKKAEAETRA 240 ................................................................................ 80 ................................................................................ 160 ..........................................P.......................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ ETH_00016860 3 ----MFK|KV 0.089 . ETH_00016860 4 ---MFKK|VN 0.098 . ETH_00016860 10 KVNTMER|IL 0.116 . ETH_00016860 22 STGTAAK|PQ 0.072 . ETH_00016860 33 QIHEIFR|KH 0.086 . ETH_00016860 34 IHEIFRK|HT 0.075 . ETH_00016860 49 LVDVEPK|DM 0.059 . ETH_00016860 56 DMVVPAK|AY 0.086 . ETH_00016860 68 EEPTNSK|AF 0.060 . ETH_00016860 71 TNSKAFR|KS 0.163 . ETH_00016860 72 NSKAFRK|SF 0.158 . ETH_00016860 96 GVEHLLR|DT 0.120 . ETH_00016860 99 HLLRDTK|NA 0.139 . ETH_00016860 109 TSTLATK|VE 0.070 . ETH_00016860 113 ATKVEDK|LE 0.057 . ETH_00016860 118 DKLETMK|IL 0.065 . ETH_00016860 122 TMKILAR|KL 0.099 . ETH_00016860 123 MKILARK|LK 0.081 . ETH_00016860 125 ILARKLK|DV 0.451 . ETH_00016860 138 NDVAAEK|LR 0.051 . ETH_00016860 140 VAAEKLR|AN 0.105 . ETH_00016860 161 LLPDTSR|PE 0.068 . ETH_00016860 166 SRPELVK|AF 0.072 . ETH_00016860 186 YLASVVR|SV 0.179 . ETH_00016860 198 HNLIDNK|IR 0.056 . ETH_00016860 200 LIDNKIR|NK 0.106 . ETH_00016860 202 DNKIRNK|RD 0.055 . ETH_00016860 203 NKIRNKR|DA 0.809 *ProP* ETH_00016860 208 KRDAELK|EK 0.067 . ETH_00016860 210 DAELKEK|ES 0.065 . ETH_00016860 219 ATAEEEK|HK 0.068 . ETH_00016860 221 AEEEKHK|KA 0.084 . ETH_00016860 222 EEEKHKK|AE 0.091 . ETH_00016860 228 KAEAETR|A- 0.109 . ____________________________^_________________

  • Fasta :-

    >ETH_00016860 ATGTTCAAAAAAGTGAACACAATGGAGCGGATCCTGGGGTGGTACAGCACGGGGACTGCA GCAAAACCCCAGGACCTTCAAATCCACGAAATCTTTCGAAAACATACTCCAAACCCTTTC TACCTTCTCGTCGACGTCGAGCCCAAGGACATGGTGGTGCCGGCGAAGGCTTACTGCACA ATTGAAGAGCCAACGAACTCGAAGGCCTTTAGAAAGTCTTTTGTTTATGTTCCTTGCACA ATTGGGGCTTATGAGGCTGAAGAGGTTGGAGTTGAGCATCTTCTAAGAGACACTAAAAAC GCATCCACTTCGACACTCGCAACAAAAGTGGAAGACAAACTAGAAACGATGAAGATCTTG GCGAGGAAGTTAAAAGATGTTGCAGATTATTTAAATGATGTTGCAGCAGAGAAGCTGCGG GCAAACCCCACCATCATTTACACTGTGCAAGAGATCTTCAATTTGCTGCCGGACACTTCT CGCCCCGAACTGGTTAAAGCCTTTGCGACGCAAACTAACGACAGCATGATGACGCTTTAC CTTGCTAGTGTTGTTCGCTCGGTGTTGGCGCTGCACAACTTGATTGACAACAAGATCCGA AACAAGAGAGATGCGGAGCTGAAGGAGAAGGAATCGGCAACGGCTGAGGAGGAGAAGCAC AAAAAGGCAGAGGCGGAGACGCGGGCGTGA
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  • Fasta :-

    MFKKVNTMERILGWYSTGTAAKPQDLQIHEIFRKHTPNPFYLLVDVEPKDMVVPAKAYCT IEEPTNSKAFRKSFVYVPCTIGAYEAEEVGVEHLLRDTKNASTSTLATKVEDKLETMKIL ARKLKDVADYLNDVAAEKLRANPTIIYTVQEIFNLLPDTSRPELVKAFATQTNDSMMTLY LASVVRSVLALHNLIDNKIRNKRDAELKEKESATAEEEKHKKAEAETRA

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India