ETH_00018255 | hypothetical protein

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No Results
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  • Fasta :-

    >ETH_00018255 MSVNKMPSGTPAHHRHATPKPTAAERPHGHKEAPPQVIPMTNVMPGDSPFVTWDQFQSAM SVIRTVIGGTMESGATIPILPQDGSTMQAFLLRIERRYTQMGLEPRVWGNAFIDHLVGPT LTYWMYLRRTIDLSNWARVQRRLLERFDKTMSQSQLLTELAKVRWNGNPKEYTDRFAAVA ARGASNAQQNALCHSSESLRGTAEPALGKASMRCKPCNAHRSY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00018255.fa Sequence name : ETH_00018255 Sequence length : 223 VALUES OF COMPUTED PARAMETERS Coef20 : 3.257 CoefTot : -1.416 ChDiff : 10 ZoneTo : 24 KR : 3 DE : 0 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.076 0.847 0.084 0.517 MesoH : -0.252 0.165 -0.345 0.207 MuHd_075 : 30.914 18.112 8.946 6.693 MuHd_095 : 23.537 11.950 6.612 4.160 MuHd_100 : 23.042 12.625 5.017 4.834 MuHd_105 : 22.030 12.077 4.039 5.290 Hmax_075 : 3.733 2.567 -1.755 2.543 Hmax_095 : 6.800 1.700 -1.682 1.980 Hmax_100 : 7.400 2.800 -1.682 2.210 Hmax_105 : 6.533 2.800 -1.866 2.368 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4823 0.5177 DFMC : 0.4511 0.5489 This protein is probably imported in mitochondria. f(Ser) = 0.0833 f(Arg) = 0.0417 CMi = 0.64935 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 223 ETH_00018255 MSVNKMPSGTPAHHRHATPKPTAAERPHGHKEAPPQVIPMTNVMPGDSPFVTWDQFQSAMSVIRTVIGGTMESGATIPIL 80 PQDGSTMQAFLLRIERRYTQMGLEPRVWGNAFIDHLVGPTLTYWMYLRRTIDLSNWARVQRRLLERFDKTMSQSQLLTEL 160 AKVRWNGNPKEYTDRFAAVAARGASNAQQNALCHSSESLRGTAEPALGKASMRCKPCNAHRSY 240 ................................................................................ 80 ................................................................................ 160 ............................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00018255 5 --MSVNK|MP 0.067 . ETH_00018255 15 GTPAHHR|HA 0.149 . ETH_00018255 20 HRHATPK|PT 0.113 . ETH_00018255 26 KPTAAER|PH 0.109 . ETH_00018255 31 ERPHGHK|EA 0.070 . ETH_00018255 64 SAMSVIR|TV 0.161 . ETH_00018255 93 MQAFLLR|IE 0.090 . ETH_00018255 96 FLLRIER|RY 0.153 . ETH_00018255 97 LLRIERR|YT 0.221 . ETH_00018255 106 QMGLEPR|VW 0.108 . ETH_00018255 128 TYWMYLR|RT 0.081 . ETH_00018255 129 YWMYLRR|TI 0.137 . ETH_00018255 138 DLSNWAR|VQ 0.091 . ETH_00018255 141 NWARVQR|RL 0.194 . ETH_00018255 142 WARVQRR|LL 0.192 . ETH_00018255 146 QRRLLER|FD 0.102 . ETH_00018255 149 LLERFDK|TM 0.156 . ETH_00018255 162 LLTELAK|VR 0.061 . ETH_00018255 164 TELAKVR|WN 0.097 . ETH_00018255 170 RWNGNPK|EY 0.070 . ETH_00018255 175 PKEYTDR|FA 0.115 . ETH_00018255 182 FAAVAAR|GA 0.178 . ETH_00018255 200 HSSESLR|GT 0.100 . ETH_00018255 209 AEPALGK|AS 0.058 . ETH_00018255 213 LGKASMR|CK 0.085 . ETH_00018255 215 KASMRCK|PC 0.079 . ETH_00018255 221 KPCNAHR|SY 0.158 . ____________________________^_________________

  • Fasta :-

    >ETH_00018255 ATGTCAGTCAACAAAATGCCGAGCGGGACGCCAGCCCATCATCGCCATGCGACTCCGAAG CCCACCGCGGCAGAGCGGCCGCATGGACATAAGGAGGCGCCCCCGCAGGTGATACCTATG ACCAATGTTATGCCAGGGGACAGTCCCTTCGTCACCTGGGACCAATTCCAGTCCGCAATG AGTGTGATAAGAACTGTTATAGGGGGGACCATGGAATCCGGCGCAACGATTCCCATACTA CCACAAGACGGCAGCACTATGCAGGCCTTTCTGCTGCGCATCGAGCGCCGGTACACCCAG ATGGGATTGGAACCACGTGTGTGGGGAAATGCATTTATTGACCACCTTGTGGGCCCGACT CTAACGTATTGGATGTATCTACGGCGAACTATCGACCTAAGCAACTGGGCGAGAGTACAG CGCAGGCTTTTGGAGCGGTTTGACAAAACAATGTCGCAGAGTCAATTGTTAACGGAGTTG GCTAAAGTACGGTGGAACGGTAACCCGAAGGAGTACACGGACCGGTTTGCGGCTGTAGCG GCGCGTGGGGCAAGCAACGCGCAACAAAACGCGCTTTGTCATTCATCCGAGAGCCTTAGG GGCACCGCCGAACCGGCTTTGGGCAAAGCCAGTATGAGATGCAAACCGTGCAATGCCCAT CGCTCGTATTAG
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  • Fasta :-

    No Results
    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
ETH_0001825518 THRHATPKPT0.996unspETH_0001825561 SQSAMSVIRT0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India