ETH_00028585 | hypothetical protein, conserved

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  • Fasta :-

    >ETH_00028585 MIRNNKRIEDSGQHQQQQQQPQQQQQQQQVRVWRALQVSDMACVLPLGPPGSALPGSLLL LQSAVDLLHLLKQIREVRGAYGAWARTQDGLLALMTYRDPKPGQSLETFRTSGVFAQAWA SGAAEGPPGGAPEAPAGAPGVAGGASEGPPGAPGGAPGVSEEQLLGALLNAVALMDKPVG LEARGPRALRQLLDGEGPPHRRAHRAQLLAAGAPEVAAAAALLSKALQGGPQSLVLVGPP EAASEVASHGVGDLARIRVE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00028585.fa Sequence name : ETH_00028585 Sequence length : 260 VALUES OF COMPUTED PARAMETERS Coef20 : 3.033 CoefTot : -0.111 ChDiff : 0 ZoneTo : 8 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.447 1.618 0.256 0.596 MesoH : 0.128 0.385 -0.206 0.337 MuHd_075 : 8.348 8.511 4.015 0.857 MuHd_095 : 30.780 12.860 7.743 6.409 MuHd_100 : 36.911 16.980 8.969 7.724 MuHd_105 : 37.997 17.958 8.862 8.001 Hmax_075 : -18.550 -7.400 -7.024 -2.590 Hmax_095 : -4.900 -5.300 -4.468 -0.140 Hmax_100 : -4.900 0.000 -4.006 1.550 Hmax_105 : -6.500 0.000 -4.006 1.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9490 0.0510 DFMC : 0.9311 0.0689
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 260 ETH_00028585 MIRNNKRIEDSGQHQQQQQQPQQQQQQQQVRVWRALQVSDMACVLPLGPPGSALPGSLLLLQSAVDLLHLLKQIREVRGA 80 YGAWARTQDGLLALMTYRDPKPGQSLETFRTSGVFAQAWASGAAEGPPGGAPEAPAGAPGVAGGASEGPPGAPGGAPGVS 160 EEQLLGALLNAVALMDKPVGLEARGPRALRQLLDGEGPPHRRAHRAQLLAAGAPEVAAAAALLSKALQGGPQSLVLVGPP 240 EAASEVASHGVGDLARIRVE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00028585 3 ----MIR|NN 0.100 . ETH_00028585 6 -MIRNNK|RI 0.163 . ETH_00028585 7 MIRNNKR|IE 0.264 . ETH_00028585 31 QQQQQVR|VW 0.111 . ETH_00028585 34 QQVRVWR|AL 0.297 . ETH_00028585 72 DLLHLLK|QI 0.065 . ETH_00028585 75 HLLKQIR|EV 0.133 . ETH_00028585 78 KQIREVR|GA 0.322 . ETH_00028585 86 AYGAWAR|TQ 0.094 . ETH_00028585 98 LALMTYR|DP 0.102 . ETH_00028585 101 MTYRDPK|PG 0.110 . ETH_00028585 110 QSLETFR|TS 0.090 . ETH_00028585 177 AVALMDK|PV 0.075 . ETH_00028585 184 PVGLEAR|GP 0.099 . ETH_00028585 187 LEARGPR|AL 0.389 . ETH_00028585 190 RGPRALR|QL 0.279 . ETH_00028585 201 GEGPPHR|RA 0.105 . ETH_00028585 202 EGPPHRR|AH 0.151 . ETH_00028585 205 PHRRAHR|AQ 0.185 . ETH_00028585 225 AAALLSK|AL 0.069 . ETH_00028585 256 GVGDLAR|IR 0.081 . ETH_00028585 258 GDLARIR|VE 0.070 . ____________________________^_________________

  • Fasta :-

    >ETH_00028585 ATGATAAGAAATAATAAAAGAATAGAAGACAGTGGGCAGCACCAGCAGCAGCAGCAGCAA CCGCAGCAGCAGCAGCAGCAGCAGCAGGTGCGCGTGTGGCGGGCGCTGCAGGTGAGCGAC ATGGCGTGCGTGCTGCCGCTGGGGCCCCCCGGCTCTGCGCTGCCTGGGAGTTTGCTGCTG CTGCAGTCTGCTGTCGATTTGCTGCACCTTTTGAAGCAAATCCGCGAAGTCCGCGGGGCC TACGGGGCCTGGGCCAGAACTCAAGATGGCCTTTTGGCCCTAATGACTTACAGAGACCCA AAGCCTGGGCAGTCTCTCGAGACCTTCAGGACTTCCGGGGTCTTTGCCCAGGCCTGGGCC TCGGGGGCCGCCGAGGGGCCCCCCGGGGGTGCCCCCGAGGCCCCCGCGGGGGCCCCCGGG GTGGCCGGGGGGGCCTCCGAGGGGCCCCCTGGGGCCCCCGGGGGGGCCCCTGGGGTCTCG GAGGAGCAGCTGCTGGGGGCCCTGCTGAATGCAGTGGCTCTGATGGACAAGCCGGTGGGC CTGGAGGCGAGGGGCCCCCGCGCGCTGCGGCAGCTGCTGGACGGGGAGGGGCCCCCCCAC CGGAGGGCCCACAGGGCGCAGCTGCTTGCTGCGGGGGCCCCCGAGGTTGCAGCAGCAGCA GCACTTCTCAGCAAGGCCCTCCAGGGGGGCCCCCAGTCCCTCGTGCTTGTGGGGCCCCCC GAGGCCGCCAGCGAAGTCGCCAGCCACGGCGTGGGGGACCTCGCCCGCATTCGCGTCGAG TGA
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India