ETH_00028755 | hypothetical protein

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  • Fasta :-

    >ETH_00028755 MVADQRSKPRSHGKGMMRAVATGPNDIPVSLEWGNKLLNTAEGTITSDGHAEGTQRLLET QWESGSASILSEEAPGATTASNRKSADATEDGYRPD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00028755.fa Sequence name : ETH_00028755 Sequence length : 96 VALUES OF COMPUTED PARAMETERS Coef20 : 3.964 CoefTot : -1.196 ChDiff : -4 ZoneTo : 25 KR : 5 DE : 1 CleavSite : 20 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.147 0.418 -0.176 0.266 MesoH : -1.048 -0.439 -0.569 0.049 MuHd_075 : 33.251 17.457 7.102 5.615 MuHd_095 : 34.627 14.870 6.323 8.425 MuHd_100 : 31.523 14.597 7.246 7.431 MuHd_105 : 29.420 15.501 8.103 6.552 Hmax_075 : 9.200 5.000 -1.167 2.240 Hmax_095 : 8.800 4.600 -1.220 3.200 Hmax_100 : 11.000 4.000 0.411 3.580 Hmax_105 : 10.967 6.417 1.159 4.013 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3172 0.6828 DFMC : 0.4400 0.5600 This protein is probably imported in mitochondria. f(Ser) = 0.0800 f(Arg) = 0.1200 CMi = 0.33613 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 96 ETH_00028755 MVADQRSKPRSHGKGMMRAVATGPNDIPVSLEWGNKLLNTAEGTITSDGHAEGTQRLLETQWESGSASILSEEAPGATTA 80 SNRKSADATEDGYRPD 160 ................................................................................ 80 ................ 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00028755 6 -MVADQR|SK 0.090 . ETH_00028755 8 VADQRSK|PR 0.068 . ETH_00028755 10 DQRSKPR|SH 0.256 . ETH_00028755 14 KPRSHGK|GM 0.094 . ETH_00028755 18 HGKGMMR|AV 0.153 . ETH_00028755 36 SLEWGNK|LL 0.074 . ETH_00028755 56 HAEGTQR|LL 0.098 . ETH_00028755 83 ATTASNR|KS 0.093 . ETH_00028755 84 TTASNRK|SA 0.238 . ETH_00028755 94 ATEDGYR|PD 0.077 . ____________________________^_________________

  • Fasta :-

    >ETH_00028755 ATGGTTGCAGACCAGCGTTCTAAGCCGCGTAGCCATGGCAAAGGGATGATGCGTGCGGTA GCGACAGGGCCTAATGATATCCCAGTCTCCCTTGAGTGGGGAAACAAACTGCTCAACACT GCGGAAGGAACTATTACGAGCGATGGGCACGCGGAAGGGACTCAGCGGCTTTTGGAAACG CAGTGGGAGTCTGGGTCGGCGTCGATCCTAAGTGAAGAGGCTCCGGGCGCGACGACGGCT AGCAACAGGAAGTCTGCAGATGCAACAGAAGACGGCTACAGGCCAGACTGA
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  • Fasta :-

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
ETH_0002875511 SSKPRSHGKG0.993unspETH_0002875585 SSNRKSADAT0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India