ETH_00029965 | hypothetical protein

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No Results
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  • Fasta :-

    >ETH_00029965 MSVSKMASGTPAHHRHATPKPTVAERPHGHKEAPLQVIPMTNFMPGDSPFATWDQFQSAM SVIRTVIGRTVQSGATIPILPADSSTIQAFLLRIERRYTQMGLEPREWGNALIDHLVGPA LTYWMYLWRTIDLSDWATVQRRLLERFDKTMSQSQLLTELAKVRWNGNPKENTDRFVAVA ERGLGLAPDELADY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00029965.fa Sequence name : ETH_00029965 Sequence length : 194 VALUES OF COMPUTED PARAMETERS Coef20 : 3.644 CoefTot : -0.917 ChDiff : 1 ZoneTo : 24 KR : 3 DE : 0 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.853 1.065 0.019 0.562 MesoH : -0.296 0.227 -0.343 0.192 MuHd_075 : 32.166 20.363 9.330 7.031 MuHd_095 : 20.594 11.805 6.364 3.880 MuHd_100 : 21.013 12.762 6.116 4.573 MuHd_105 : 21.994 13.112 4.592 5.351 Hmax_075 : 5.833 6.533 -0.917 3.127 Hmax_095 : 8.600 5.100 -0.964 2.480 Hmax_100 : 8.600 5.100 -0.964 2.480 Hmax_105 : 8.633 6.767 -1.028 2.952 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5676 0.4324 DFMC : 0.5363 0.4637
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 194 ETH_00029965 MSVSKMASGTPAHHRHATPKPTVAERPHGHKEAPLQVIPMTNFMPGDSPFATWDQFQSAMSVIRTVIGRTVQSGATIPIL 80 PADSSTIQAFLLRIERRYTQMGLEPREWGNALIDHLVGPALTYWMYLWRTIDLSDWATVQRRLLERFDKTMSQSQLLTEL 160 AKVRWNGNPKENTDRFVAVAERGLGLAPDELADY 240 ................................................................................ 80 ................................................................................ 160 .................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00029965 5 --MSVSK|MA 0.081 . ETH_00029965 15 GTPAHHR|HA 0.135 . ETH_00029965 20 HRHATPK|PT 0.108 . ETH_00029965 26 KPTVAER|PH 0.119 . ETH_00029965 31 ERPHGHK|EA 0.063 . ETH_00029965 64 SAMSVIR|TV 0.132 . ETH_00029965 69 IRTVIGR|TV 0.140 . ETH_00029965 93 IQAFLLR|IE 0.085 . ETH_00029965 96 FLLRIER|RY 0.142 . ETH_00029965 97 LLRIERR|YT 0.221 . ETH_00029965 106 QMGLEPR|EW 0.119 . ETH_00029965 129 YWMYLWR|TI 0.092 . ETH_00029965 141 DWATVQR|RL 0.076 . ETH_00029965 142 WATVQRR|LL 0.142 . ETH_00029965 146 QRRLLER|FD 0.102 . ETH_00029965 149 LLERFDK|TM 0.156 . ETH_00029965 162 LLTELAK|VR 0.061 . ETH_00029965 164 TELAKVR|WN 0.099 . ETH_00029965 170 RWNGNPK|EN 0.069 . ETH_00029965 175 PKENTDR|FV 0.166 . ETH_00029965 182 FVAVAER|GL 0.104 . ____________________________^_________________

  • Fasta :-

    >ETH_00029965 ATGTCAGTGAGCAAAATGGCGAGCGGGACGCCGGCCCATCATCGCCATGCTACTCCGAAG CCCACCGTGGCAGAGCGGCCGCATGGGCATAAGGAGGCGCCCCTGCAGGTGATACCTATG ACCAATTTTATGCCAGGGGACAGTCCCTTCGCCACGTGGGACCAATTTCAGTCCGCTATG AGTGTAATAAGAACTGTTATAGGGCGAACCGTGCAATCGGGCGCAACGATTCCCATACTA CCAGCAGACAGCAGCACTATACAGGCCTTTTTGCTGCGCATCGAGCGCCGGTACACCCAG ATGGGATTGGAGCCGCGCGAGTGGGGAAATGCACTTATTGACCACCTTGTGGGCCCGGCT CTAACGTATTGGATGTATTTATGGAGAACTATCGACCTAAGCGACTGGGCGACGGTACAG CGCAGGCTTTTGGAGCGGTTTGACAAAACAATGTCGCAGAGTCAATTGTTAACGGAGTTG GCTAAAGTACGGTGGAATGGTAACCCGAAGGAAAACACGGACCGGTTTGTGGCTGTAGCG GAGCGTGGTTTGGGTCTTGCCCCCGACGAACTCGCTGATTATTAG
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  • Fasta :-

    No Results
    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
ETH_0002996518 THRHATPKPT0.996unspETH_0002996561 SQSAMSVIRT0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India