ETH_00032220 | rhomboid-like protein

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
ETH_00032220OTHER0.9999390.0000280.000033
No Results

  • Fasta :-

    >ETH_00032220 MSDIESQRVLGAGIPRTGRLIDVAFPNISLDKSIVVITLAQIAVYIMSCAMSSAFEPTER VLYQLGATYGPGIRHLQAWRLIMPVFLHVGIVHLLFNVLFILHMGLDKEIKYGRTNFLIL YFSSGLVGSILAEILIVWHKLDERTRNMYTLDMTVFGALMILLSYGQTVDIWGHLGGFVC GFAVTCEFNKNIRDLPQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00032220.fa Sequence name : ETH_00032220 Sequence length : 197 VALUES OF COMPUTED PARAMETERS Coef20 : 3.946 CoefTot : 0.112 ChDiff : 0 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.794 2.300 0.412 0.829 MesoH : 0.478 1.082 -0.110 0.453 MuHd_075 : 20.332 19.616 5.891 6.759 MuHd_095 : 21.782 7.286 4.742 4.313 MuHd_100 : 15.219 5.067 3.651 3.802 MuHd_105 : 15.231 8.010 3.424 4.033 Hmax_075 : 5.133 15.283 1.171 5.530 Hmax_095 : 11.287 8.225 2.025 3.631 Hmax_100 : 0.100 5.000 -0.870 3.110 Hmax_105 : 8.700 7.800 0.988 3.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6634 0.3366 DFMC : 0.8957 0.1043
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 197 ETH_00032220 MSDIESQRVLGAGIPRTGRLIDVAFPNISLDKSIVVITLAQIAVYIMSCAMSSAFEPTERVLYQLGATYGPGIRHLQAWR 80 LIMPVFLHVGIVHLLFNVLFILHMGLDKEIKYGRTNFLILYFSSGLVGSILAEILIVWHKLDERTRNMYTLDMTVFGALM 160 ILLSYGQTVDIWGHLGGFVCGFAVTCEFNKNIRDLPQ 240 ................................................................................ 80 ................................................................................ 160 ..................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00032220 8 SDIESQR|VL 0.137 . ETH_00032220 16 LGAGIPR|TG 0.077 . ETH_00032220 19 GIPRTGR|LI 0.287 . ETH_00032220 32 PNISLDK|SI 0.077 . ETH_00032220 60 AFEPTER|VL 0.087 . ETH_00032220 74 TYGPGIR|HL 0.084 . ETH_00032220 80 RHLQAWR|LI 0.096 . ETH_00032220 108 LHMGLDK|EI 0.066 . ETH_00032220 111 GLDKEIK|YG 0.065 . ETH_00032220 114 KEIKYGR|TN 0.086 . ETH_00032220 140 ILIVWHK|LD 0.065 . ETH_00032220 144 WHKLDER|TR 0.068 . ETH_00032220 146 KLDERTR|NM 0.084 . ETH_00032220 190 VTCEFNK|NI 0.064 . ETH_00032220 193 EFNKNIR|DL 0.114 . ____________________________^_________________

  • Fasta :-

    >ETH_00032220 ATGTCGGACATCGAATCCCAGAGAGTCCTCGGGGCTGGGATCCCGCGGACTGGCAGACTG ATTGATGTTGCCTTCCCTAACATTTCACTGGACAAGTCGATTGTTGTGATAACGTTGGCC CAGATCGCGGTCTACATTATGTCATGTGCGATGTCGTCGGCTTTTGAGCCTACGGAGCGC GTCTTGTACCAATTGGGCGCTACCTACGGACCTGGGATACGGCACCTCCAAGCATGGAGG CTTATCATGCCTGTTTTCCTTCATGTCGGCATTGTCCATTTGCTGTTCAATGTTCTCTTC ATTTTGCACATGGGACTTGACAAGGAAATAAAGTATGGGAGGACGAATTTCCTCATACTA TACTTCTCCTCTGGTCTCGTGGGTTCCATCCTTGCCGAGATCTTGATTGTCTGGCACAAG CTTGACGAACGCACAAGGAACATGTACACACTCGACATGACTGTATTTGGTGCTTTGATG ATTCTTCTCTCCTACGGACAAACTGTCGACATCTGGGGCCATTTGGGAGGTTTCGTCTGC GGGTTCGCAGTAACGTGTGAATTCAACAAGAACATAAGGGACCTTCCTCAGTAA
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  • Fasta :-

    MSDIESQRVLGAGIPRTGRLIDVAFPNISLDKSIVVITLAQIAVYIMSCAMSSAFEPTER VLYQLGATYGPGIRHLQAWRLIMPVFLHVGIVHLLFNVLFILHMGLDKEIKYGRTNFLIL YFSSGLVGSILAEILIVWHKLDERTRNMYTLDMTVFGALMILLSYGQTVDIWGHLGGFVC GFAVTCEFNKNIRDLPQ

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India