ETH_00032950 | mitochondrial-processing peptidase alpha subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
ETH_00032950mTP0.1978540.0008320.801314CS pos: 53-54. RPL-AT. Pr: 0.5140
No Results

  • Fasta :-

    >ETH_00032950 MALGVLSAFRRLAVQSASTSGEAGSSLPLNSLIRNKLNAIFNRGSLSASQRPLATAAPPQ TTATAAPTAAAVAAGQQPQYRRVPFVREDLSLVMQEVPDFKYYYIGNEAPSAYPYKDVPM DQPILNPDEFPEYVQPSGAVEYSKLDNGLRIASVDRGGLVSSLGLFVNTGSRWEDVSNSG VSHMLQLLAFHSTAHLSFLRTIKTIEVLGASAACVAGREQIVYSAECVREKMPLLLPLLT GNVLFPRLLPWEISANKNKLIQMKQKIESQPDQCVSEMLHQTAWHNNTLGLKLFATEKSL QHYDANTIRQFILDHFSPENMVCVGVNVNHEEFSRWVMRAFVDYNAVPNKPRKYIQPIYT GGDSRVEALAPHAHIAVAFETPGGWNGGDLVTYSVLQTLMGGGGAFSTGGPGKGMYTRLY LNVLNKYDWVESAMAFNTQYTDTGLFGLYMLANPNKASSAVKVMAEQFAGMTRVTAEELQ RAKNSIKSSIYMNLENRGIVMEDIGRQLLMSGRVISPAEFCRAIDNVKEADIRRVAEKMF SKPPTVVAYGDICSVPHYEEIRAALRAAGVGK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00032950.fa Sequence name : ETH_00032950 Sequence length : 572 VALUES OF COMPUTED PARAMETERS Coef20 : 5.054 CoefTot : 0.846 ChDiff : 3 ZoneTo : 87 KR : 9 DE : 1 CleavSite : 83 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.441 1.382 0.135 0.530 MesoH : 0.007 0.659 -0.252 0.284 MuHd_075 : 29.902 22.647 7.216 7.329 MuHd_095 : 34.831 26.561 9.315 8.556 MuHd_100 : 29.481 21.798 7.596 6.325 MuHd_105 : 24.912 17.850 7.063 5.356 Hmax_075 : 2.917 18.783 3.099 3.859 Hmax_095 : 11.550 16.538 2.783 5.495 Hmax_100 : 14.700 15.500 1.702 4.760 Hmax_105 : 11.900 13.700 2.239 4.363 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0145 0.9855 DFMC : 0.0032 0.9968 This protein is probably imported in mitochondria. f(Ser) = 0.1149 f(Arg) = 0.0920 CMi = 0.57837 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 572 ETH_00032950 MALGVLSAFRRLAVQSASTSGEAGSSLPLNSLIRNKLNAIFNRGSLSASQRPLATAAPPQTTATAAPTAAAVAAGQQPQY 80 RRVPFVREDLSLVMQEVPDFKYYYIGNEAPSAYPYKDVPMDQPILNPDEFPEYVQPSGAVEYSKLDNGLRIASVDRGGLV 160 SSLGLFVNTGSRWEDVSNSGVSHMLQLLAFHSTAHLSFLRTIKTIEVLGASAACVAGREQIVYSAECVREKMPLLLPLLT 240 GNVLFPRLLPWEISANKNKLIQMKQKIESQPDQCVSEMLHQTAWHNNTLGLKLFATEKSLQHYDANTIRQFILDHFSPEN 320 MVCVGVNVNHEEFSRWVMRAFVDYNAVPNKPRKYIQPIYTGGDSRVEALAPHAHIAVAFETPGGWNGGDLVTYSVLQTLM 400 GGGGAFSTGGPGKGMYTRLYLNVLNKYDWVESAMAFNTQYTDTGLFGLYMLANPNKASSAVKVMAEQFAGMTRVTAEELQ 480 RAKNSIKSSIYMNLENRGIVMEDIGRQLLMSGRVISPAEFCRAIDNVKEADIRRVAEKMFSKPPTVVAYGDICSVPHYEE 560 IRAALRAAGVGK 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00032950 10 GVLSAFR|RL 0.070 . ETH_00032950 11 VLSAFRR|LA 0.240 . ETH_00032950 34 PLNSLIR|NK 0.080 . ETH_00032950 36 NSLIRNK|LN 0.059 . ETH_00032950 43 LNAIFNR|GS 0.096 . ETH_00032950 51 SLSASQR|PL 0.130 . ETH_00032950 81 GQQPQYR|RV 0.130 . ETH_00032950 82 QQPQYRR|VP 0.103 . ETH_00032950 87 RRVPFVR|ED 0.098 . ETH_00032950 101 QEVPDFK|YY 0.068 . ETH_00032950 116 PSAYPYK|DV 0.109 . ETH_00032950 144 GAVEYSK|LD 0.060 . ETH_00032950 150 KLDNGLR|IA 0.095 . ETH_00032950 156 RIASVDR|GG 0.080 . ETH_00032950 172 FVNTGSR|WE 0.079 . ETH_00032950 200 AHLSFLR|TI 0.086 . ETH_00032950 203 SFLRTIK|TI 0.140 . ETH_00032950 218 AACVAGR|EQ 0.081 . ETH_00032950 229 YSAECVR|EK 0.083 . ETH_00032950 231 AECVREK|MP 0.054 . ETH_00032950 247 GNVLFPR|LL 0.089 . ETH_00032950 257 WEISANK|NK 0.058 . ETH_00032950 259 ISANKNK|LI 0.083 . ETH_00032950 264 NKLIQMK|QK 0.076 . ETH_00032950 266 LIQMKQK|IE 0.075 . ETH_00032950 292 NNTLGLK|LF 0.054 . ETH_00032950 298 KLFATEK|SL 0.075 . ETH_00032950 309 YDANTIR|QF 0.084 . ETH_00032950 335 NHEEFSR|WV 0.121 . ETH_00032950 339 FSRWVMR|AF 0.123 . ETH_00032950 350 YNAVPNK|PR 0.067 . ETH_00032950 352 AVPNKPR|KY 0.097 . ETH_00032950 353 VPNKPRK|YI 0.149 . ETH_00032950 365 YTGGDSR|VE 0.071 . ETH_00032950 413 STGGPGK|GM 0.070 . ETH_00032950 418 GKGMYTR|LY 0.093 . ETH_00032950 426 YLNVLNK|YD 0.069 . ETH_00032950 456 MLANPNK|AS 0.087 . ETH_00032950 462 KASSAVK|VM 0.074 . ETH_00032950 473 QFAGMTR|VT 0.084 . ETH_00032950 481 TAEELQR|AK 0.087 . ETH_00032950 483 EELQRAK|NS 0.057 . ETH_00032950 487 RAKNSIK|SS 0.077 . ETH_00032950 497 YMNLENR|GI 0.088 . ETH_00032950 506 VMEDIGR|QL 0.076 . ETH_00032950 513 QLLMSGR|VI 0.114 . ETH_00032950 522 SPAEFCR|AI 0.167 . ETH_00032950 528 RAIDNVK|EA 0.067 . ETH_00032950 533 VKEADIR|RV 0.101 . ETH_00032950 534 KEADIRR|VA 0.211 . ETH_00032950 538 IRRVAEK|MF 0.091 . ETH_00032950 542 AEKMFSK|PP 0.061 . ETH_00032950 562 PHYEEIR|AA 0.089 . ETH_00032950 566 EIRAALR|AA 0.113 . ETH_00032950 572 RAAGVGK|-- 0.078 . ____________________________^_________________

  • Fasta :-

    >ETH_00032950 ATGGCGTTGGGGGTGCTGTCCGCCTTCCGGCGGTTGGCCGTCCAGTCTGCGTCGACTTCG GGCGAGGCTGGATCATCTTTGCCGCTTAATTCATTAATTAGAAATAAATTGAATGCAATA TTTAACCGCGGTAGCCTCTCAGCTTCTCAAAGGCCACTGGCAACGGCGGCCCCACCACAG ACGACAGCAACTGCTGCACCGACCGCAGCAGCAGTAGCAGCAGGGCAGCAGCCGCAGTAC CGCCGCGTGCCGTTTGTGCGGGAAGACCTCTCTCTGGTTATGCAGGAGGTGCCTGACTTC AAGTACTATTACATTGGCAATGAGGCGCCCTCCGCGTACCCTTACAAGGACGTGCCCATG GACCAGCCCATACTTAATCCGGATGAGTTTCCTGAATATGTCCAGCCGAGCGGCGCGGTT GAGTACTCCAAACTGGACAATGGCCTTCGGATTGCTTCTGTAGACAGAGGAGGTTTGGTT TCTTCTCTGGGTTTGTTCGTCAACACCGGGAGCCGCTGGGAAGATGTGAGCAACAGCGGA GTAAGCCACATGCTGCAGCTGCTGGCTTTCCATTCAACTGCCCATTTGTCGTTTTTGCGG ACAATCAAAACAATAGAAGTTTTGGGAGCCTCTGCAGCTTGCGTGGCGGGCAGGGAGCAA ATCGTGTATAGCGCCGAGTGCGTGCGCGAGAAGATGCCTCTGTTGCTGCCGCTGTTGACT GGAAACGTCTTGTTTCCCCGTTTGCTGCCGTGGGAAATCTCGGCAAACAAAAATAAATTG ATTCAAATGAAACAAAAAATAGAAAGCCAGCCGGATCAGTGCGTTTCTGAGATGCTGCAC CAAACTGCTTGGCATAACAACACCCTCGGGCTTAAGCTCTTCGCCACAGAAAAAAGCCTC CAGCACTATGACGCAAACACCATTCGGCAGTTCATACTCGACCACTTTTCCCCAGAAAAC ATGGTCTGCGTGGGCGTGAACGTAAACCATGAGGAATTCAGCCGTTGGGTAATGAGGGCC TTTGTAGACTATAATGCTGTCCCAAACAAACCGCGAAAATATATCCAGCCAATATATACT GGAGGAGACAGCAGAGTTGAAGCGCTGGCGCCGCATGCACATATTGCTGTGGCATTTGAA ACGCCTGGGGGCTGGAACGGGGGGGACTTGGTGACCTACAGCGTCCTGCAGACTCTCATG GGAGGGGGCGGGGCTTTCAGCACTGGAGGTCCAGGGAAGGGTATGTACACCCGGTTATAC CTGAACGTTTTGAACAAGTATGACTGGGTCGAGAGCGCCATGGCCTTCAACACGCAATAC ACAGACACCGGCCTCTTTGGCCTTTACATGCTGGCCAACCCGAACAAGGCCTCAAGTGCT GTGAAGGTGATGGCGGAACAGTTTGCGGGAATGACACGTGTGACTGCCGAGGAGTTGCAG AGAGCCAAAAACTCAATAAAGAGTTCCATTTACATGAACTTAGAAAACAGAGGCATTGTT ATGGAAGACATAGGCCGCCAGTTGCTGATGAGCGGCCGCGTAATATCCCCTGCTGAGTTT TGCCGAGCTATTGACAACGTGAAGGAGGCAGACATAAGAAGGGTGGCAGAAAAGATGTTC TCCAAGCCTCCCACTGTGGTGGCCTACGGCGACATCTGCTCGGTGCCTCACTATGAGGAA ATACGGGCTGCGCTGCGCGCAGCAGGAGTTGGAAAGTAG
  • Download Fasta

  • Fasta :-

    MALGVLSAFRRLAVQSASTSGEAGSSLPLNSLIRNKLNAIFNRGSLSASQRPLATAAPPQ TTATAAPTAAAVAAGQQPQYRRVPFVREDLSLVMQEVPDFKYYYIGNEAPSAYPYKDVPM DQPILNPDEFPEYVQPSGAVEYSKLDNGLRIASVDRGGLVSSLGLFVNTGSRWEDVSNSG VSHMLQLLAFHSTAHLSFLRTIKTIEVLGASAACVAGREQIVYSAECVREKMPLLLPLLT GNVLFPRLLPWEISANKNKLIQMKQKIESQPDQCVSEMLHQTAWHNNTLGLKLFATEKSL QHYDANTIRQFILDHFSPENMVCVGVNVNHEEFSRWVMRAFVDYNAVPNKPRKYIQPIYT GGDSRVEALAPHAHIAVAFETPGGWNGGDLVTYSVLQTLMGGGGAFSTGGPGKGMYTRLY LNVLNKYDWVESAMAFNTQYTDTGLFGLYMLANPNKASSAVKVMAEQFAGMTRVTAEELQ RAKNSIKSSIYMNLENRGIVMEDIGRQLLMSGRVISPAEFCRAIDNVKEADIRRVAEKMF SKPPTVVAYGDICSVPHYEEIRAALRAAGVGK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
ETH_00032950269 SQKIESQPDQ0.995unspETH_00032950516 SGRVISPAEF0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India