ETH_00035890 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
ETH_00035890OTHER0.8824390.0075340.110027
No Results

  • Fasta :-

    >ETH_00035890 MVVSVKSFCTRSFGLGAPPGGPLGRLLQGVFGAIGECCMQLPRGLFLWELLHPQTESGYP LLSPLGIYGVRLFLEGRWRLVEIDDRVPDGGPRGAPVFPLSSDPREAWGPLLAKGLLKAF RGPLLQGGGAPPLMEALTGRKEVSLPLSPSLLSSYCLRGLWASVKLRSKPPAAAAAAAAA ADAGGAAEAPQRGSPGGPHDGGPWEELLGWTPFLVAAVKEGPPPAVSLLNRHTGGGPLQD LVGAPGELLQAL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00035890.fa Sequence name : ETH_00035890 Sequence length : 252 VALUES OF COMPUTED PARAMETERS Coef20 : 3.974 CoefTot : -1.651 ChDiff : 2 ZoneTo : 35 KR : 3 DE : 0 CleavSite : 21 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.788 1.106 0.115 0.543 MesoH : 0.038 0.460 -0.162 0.307 MuHd_075 : 30.232 15.508 7.237 6.999 MuHd_095 : 23.989 22.880 6.604 6.784 MuHd_100 : 32.105 25.919 8.295 7.410 MuHd_105 : 36.180 26.561 8.921 8.612 Hmax_075 : 12.133 10.500 3.124 4.366 Hmax_095 : 16.275 18.288 3.582 6.650 Hmax_100 : 13.900 20.300 3.603 5.460 Hmax_105 : 16.450 21.500 3.052 6.370 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1987 0.8013 DFMC : 0.4805 0.5195 This protein is probably imported in mitochondria. f(Ser) = 0.0857 f(Arg) = 0.0571 CMi = 0.57143 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 252 ETH_00035890 MVVSVKSFCTRSFGLGAPPGGPLGRLLQGVFGAIGECCMQLPRGLFLWELLHPQTESGYPLLSPLGIYGVRLFLEGRWRL 80 VEIDDRVPDGGPRGAPVFPLSSDPREAWGPLLAKGLLKAFRGPLLQGGGAPPLMEALTGRKEVSLPLSPSLLSSYCLRGL 160 WASVKLRSKPPAAAAAAAAAADAGGAAEAPQRGSPGGPHDGGPWEELLGWTPFLVAAVKEGPPPAVSLLNRHTGGGPLQD 240 LVGAPGELLQAL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00035890 6 -MVVSVK|SF 0.078 . ETH_00035890 11 VKSFCTR|SF 0.197 . ETH_00035890 25 PGGPLGR|LL 0.105 . ETH_00035890 43 CCMQLPR|GL 0.085 . ETH_00035890 71 LGIYGVR|LF 0.072 . ETH_00035890 77 RLFLEGR|WR 0.075 . ETH_00035890 79 FLEGRWR|LV 0.101 . ETH_00035890 86 LVEIDDR|VP 0.077 . ETH_00035890 93 VPDGGPR|GA 0.090 . ETH_00035890 105 PLSSDPR|EA 0.120 . ETH_00035890 114 WGPLLAK|GL 0.070 . ETH_00035890 118 LAKGLLK|AF 0.067 . ETH_00035890 121 GLLKAFR|GP 0.087 . ETH_00035890 140 MEALTGR|KE 0.077 . ETH_00035890 141 EALTGRK|EV 0.074 . ETH_00035890 158 LSSYCLR|GL 0.132 . ETH_00035890 165 GLWASVK|LR 0.060 . ETH_00035890 167 WASVKLR|SK 0.172 . ETH_00035890 169 SVKLRSK|PP 0.058 . ETH_00035890 192 AAEAPQR|GS 0.105 . ETH_00035890 219 FLVAAVK|EG 0.054 . ETH_00035890 231 AVSLLNR|HT 0.169 . ____________________________^_________________

  • Fasta :-

    >ETH_00035890 ATGGTAGTGAGTGTGAAGAGCTTCTGCACGCGGTCCTTCGGGCTGGGGGCCCCCCCGGGG GGCCCCCTGGGCCGTTTGCTGCAGGGGGTGTTTGGGGCCATAGGGGAGTGCTGCATGCAG CTGCCACGGGGCCTCTTCTTGTGGGAACTGCTGCACCCCCAGACAGAAAGTGGGTACCCT CTTTTGAGTCCTTTGGGGATTTATGGAGTGAGACTTTTCCTAGAAGGTCGCTGGAGACTT GTGGAAATAGACGACAGGGTACCGGACGGGGGCCCCCGGGGGGCCCCCGTCTTCCCGCTT TCCAGCGACCCCCGCGAGGCGTGGGGGCCCCTCCTCGCCAAGGGCCTCCTCAAGGCCTTC AGGGGGCCCCTCCTCCAGGGGGGGGGGGCCCCCCCCCTGATGGAGGCCCTTACAGGTCGC AAAGAAGTCTCTTTGCCTTTATCTCCTTCTCTCCTTTCTTCTTACTGCCTCAGGGGCCTC TGGGCCTCTGTCAAGCTCCGCAGCAAACCCCCTGCTGCTGCTGCTGCTGCTGCTGCTGCT GCGGACGCCGGGGGAGCCGCGGAAGCCCCGCAGCGGGGGTCCCCCGGGGGCCCCCACGAC GGGGGCCCCTGGGAGGAGCTCCTTGGCTGGACCCCTTTTCTTGTTGCTGCTGTTAAAGAG GGGCCCCCCCCTGCTGTGTCTCTTTTAAATCGACACACTGGGGGGGGGCCCCTCCAGGAC TTGGTGGGGGCCCCTGGCGAGCTGCTGCAGGCCCTTC
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  • Fasta :-

    MVVSVKSFCTRSFGLGAPPGGPLGRLLQGVFGAIGECCMQLPRGLFLWELLHPQTESGYP LLSPLGIYGVRLFLEGRWRLVEIDDRVPDGGPRGAPVFPLSSDPREAWGPLLAKGLLKAF RGPLLQGGGAPPLMEALTGRKEVSLPLSPSLLSSYCLRGLWASVKLRSKPPAAAAAAAAA ADAGGAAEAPQRGSPGGPHDGGPWEELLGWTPFLVAAVKEGPPPAVSLLNRHTGGGPLQD LVGAPGELLQAL

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India