ETH_00037385 | hypothetical protein

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No Results
No Results

  • Fasta :-

    >ETH_00037385 MGPSSRRVTVKIEAAAPQSSSNSRSSSSSSSSRTAEESCILRGATSELALSGSAEASKSS AAAAVAAAAAAAQQQQQAVWGPTLGASDDAELGEIKKGKKEKEIIQFCAREKENSSRPSI TLRDFAKDPFGERRKLLEFLEKKVWGDGIASDPDPRGDPRGDPRDDPRDDPKGFWASYDF SQQCTIRPSSLAAAATCGRSRSSKIAAAEQDLLLLPPAGGPPATGAPPEGAPPVGPSPDE GQPEAAAAATAANPLQLQAAATQQQQPVQQQVQQQAAEQQQTAAAPPAQQNGPLFLSPQA SQGTLQQQQQQQQQVQQQVQQQVQQQVQQQAVPSATELELKALQNAWLLLQQQQQLLLRL QQQQQQQLIQPRVAALRRYGITPSVVFAAAGVGPHKQLLQEGPLLQLGSRSWGPLPVGLS RQQQQQLLLQQQQRLLQQHLQQQQLQARRQAIEQISQIRGRLALQQAAAATTAAAAANNM QQAAAAANMQQTAAEL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00037385.fa Sequence name : ETH_00037385 Sequence length : 496 VALUES OF COMPUTED PARAMETERS Coef20 : 4.202 CoefTot : 1.281 ChDiff : 4 ZoneTo : 35 KR : 5 DE : 1 CleavSite : 26 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.182 1.147 0.068 0.534 MesoH : -0.428 -0.009 -0.308 0.166 MuHd_075 : 24.606 10.873 5.754 5.192 MuHd_095 : 30.612 16.605 8.515 6.209 MuHd_100 : 28.735 16.516 7.108 5.675 MuHd_105 : 30.026 12.723 7.107 6.130 Hmax_075 : 5.367 3.617 -0.383 -0.327 Hmax_095 : 10.700 12.600 1.869 3.200 Hmax_100 : 14.100 12.700 2.160 4.150 Hmax_105 : 5.900 10.500 0.036 2.730 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5917 0.4083 DFMC : 0.3894 0.6106 This protein is probably imported in chloroplast. f(Ser) = 0.4000 f(Arg) = 0.1143 CMi = 1.73913 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 496 ETH_00037385 MGPSSRRVTVKIEAAAPQSSSNSRSSSSSSSSRTAEESCILRGATSELALSGSAEASKSSAAAAVAAAAAAAQQQQQAVW 80 GPTLGASDDAELGEIKKGKKEKEIIQFCAREKENSSRPSITLRDFAKDPFGERRKLLEFLEKKVWGDGIASDPDPRGDPR 160 GDPRDDPRDDPKGFWASYDFSQQCTIRPSSLAAAATCGRSRSSKIAAAEQDLLLLPPAGGPPATGAPPEGAPPVGPSPDE 240 GQPEAAAAATAANPLQLQAAATQQQQPVQQQVQQQAAEQQQTAAAPPAQQNGPLFLSPQASQGTLQQQQQQQQQVQQQVQ 320 QQVQQQVQQQAVPSATELELKALQNAWLLLQQQQQLLLRLQQQQQQQLIQPRVAALRRYGITPSVVFAAAGVGPHKQLLQ 400 EGPLLQLGSRSWGPLPVGLSRQQQQQLLLQQQQRLLQQHLQQQQLQARRQAIEQISQIRGRLALQQAAAATTAAAAANNM 480 QQAAAAANMQQTAAEL 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00037385 6 -MGPSSR|RV 0.117 . ETH_00037385 7 MGPSSRR|VT 0.145 . ETH_00037385 11 SRRVTVK|IE 0.090 . ETH_00037385 24 QSSSNSR|SS 0.172 . ETH_00037385 33 SSSSSSR|TA 0.157 . ETH_00037385 42 EESCILR|GA 0.119 . ETH_00037385 58 GSAEASK|SS 0.085 . ETH_00037385 96 AELGEIK|KG 0.054 . ETH_00037385 97 ELGEIKK|GK 0.097 . ETH_00037385 99 GEIKKGK|KE 0.073 . ETH_00037385 100 EIKKGKK|EK 0.105 . ETH_00037385 102 KKGKKEK|EI 0.085 . ETH_00037385 110 IIQFCAR|EK 0.092 . ETH_00037385 112 QFCAREK|EN 0.060 . ETH_00037385 117 EKENSSR|PS 0.103 . ETH_00037385 123 RPSITLR|DF 0.156 . ETH_00037385 127 TLRDFAK|DP 0.094 . ETH_00037385 133 KDPFGER|RK 0.061 . ETH_00037385 134 DPFGERR|KL 0.124 . ETH_00037385 135 PFGERRK|LL 0.077 . ETH_00037385 142 LLEFLEK|KV 0.074 . ETH_00037385 143 LEFLEKK|VW 0.125 . ETH_00037385 156 ASDPDPR|GD 0.079 . ETH_00037385 160 DPRGDPR|GD 0.084 . ETH_00037385 164 DPRGDPR|DD 0.094 . ETH_00037385 168 DPRDDPR|DD 0.148 . ETH_00037385 172 DPRDDPK|GF 0.082 . ETH_00037385 187 SQQCTIR|PS 0.096 . ETH_00037385 199 AAATCGR|SR 0.120 . ETH_00037385 201 ATCGRSR|SS 0.112 . ETH_00037385 204 GRSRSSK|IA 0.373 . ETH_00037385 341 ATELELK|AL 0.059 . ETH_00037385 359 QQQLLLR|LQ 0.088 . ETH_00037385 372 QQLIQPR|VA 0.083 . ETH_00037385 377 PRVAALR|RY 0.093 . ETH_00037385 378 RVAALRR|YG 0.113 . ETH_00037385 396 AGVGPHK|QL 0.068 . ETH_00037385 410 LLQLGSR|SW 0.143 . ETH_00037385 421 LPVGLSR|QQ 0.092 . ETH_00037385 434 LLQQQQR|LL 0.117 . ETH_00037385 448 QQQLQAR|RQ 0.091 . ETH_00037385 449 QQLQARR|QA 0.170 . ETH_00037385 459 EQISQIR|GR 0.083 . ETH_00037385 461 ISQIRGR|LA 0.128 . ____________________________^_________________

  • Fasta :-

    >ETH_00037385 ATGGGGCCCTCCAGCCGGCGCGTGACTGTCAAGATAGAGGCAGCAGCGCCGCAGAGCAGC AGCAACAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGAACGGCTGAAGAGTCGTGCATT CTGCGGGGAGCTACTTCGGAGCTAGCGCTGTCTGGGTCTGCTGAGGCCTCTAAAAGCTCT GCTGCTGCTGCAGTTGCTGCTGCTGCTGCTGCTGCGCAGCAGCAGCAGCAGGCGGTGTGG GGCCCCACACTGGGGGCCTCAGATGACGCGGAATTGGGAGAAATAAAAAAAGGAAAAAAA GAAAAAGAAATAATTCAATTCTGCGCCAGAGAGAAAGAGAACTCCTCGCGGCCCTCCATA ACTCTGCGGGACTTTGCAAAAGACCCTTTTGGGGAGCGGCGGAAGCTGTTGGAGTTTTTG GAAAAGAAAGTGTGGGGTGATGGGATCGCCTCCGATCCCGATCCCAGAGGCGATCCCAGA GGCGATCCCAGAGACGATCCCAGAGACGATCCCAAGGGTTTTTGGGCCTCCTATGACTTC AGCCAGCAGTGCACAATTAGGCCAAGTTCTTTGGCTGCAGCAGCAACTTGCGGGCGCAGC CGCAGCAGCAAAATCGCAGCAGCAGAACAAGACTTGCTGCTGCTGCCCCCAGCAGGGGGC CCCCCAGCAACAGGGGCCCCTCCCGAGGGGGCCCCCCCTGTGGGGCCTTCTCCAGATGAG GGGCAGCCAGAAGCGGCAGCAGCAGCAACTGCAGCAAACCCCCTGCAGCTGCAAGCAGCA GCGACACAGCAGCAGCAGCCGGTGCAGCAGCAGGTGCAGCAGCAGGCCGCAGAGCAGCAG CAGACAGCAGCAGCACCACCGGCGCAGCAAAATGGCCCACTGTTCCTGTCCCCGCAGGCG TCTCAAGGGACCCTCCAGCAGCAGCAGCAGCAGCAACAGCAGGTGCAGCAGCAGGTGCAG CAGCAGGTGCAGCAGCAGGTGCAGCAGCAGGCTGTGCCATCAGCGACAGAGCTGGAGCTG AAAGCCCTGCAGAACGCGTGGTTGCTGCTGCAGCAGCAGCAGCAACTGCTGCTGCGGCTG CAGCAGCAGCAGCAGCAGCAGCTAATTCAGCCCAGAGTTGCTGCTCTCCGCAGATATGGC ATAACACCCTCTGTGGTCTTTGCTGCTGCTGGTGTGGGGCCCCACAAGCAGCTTCTGCAG GAGGGCCCCCTGCTGCAGTTGGGCTCTCGTTCTTGGGGGCCCCTGCCTGTGGGGCTGTCC CGGCAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAGCAGCGGCTGCTGCAGCAGCACCTG CAGCAGCAGCAGCTGCAGGCCAGGCGGCAAGCCATAGAGCAGATCTCCCAAATCCGCGGC AGACTGGCGCTGCAGCAAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCGAACAATATG CAGCAAGCAGCAGCAGCAGCAAATATGCAACAAACAGCAGCAGAACTCTAA
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  • Fasta :-

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No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
ETH_0003738528 SRSSSSSSSS0.993unspETH_0003738528 SRSSSSSSSS0.993unspETH_0003738528 SRSSSSSSSS0.993unspETH_0003738530 SSSSSSSSRT0.995unspETH_0003738531 SSSSSSSRTA0.994unspETH_0003738532 SSSSSSRTAE0.992unspETH_00037385203 SRSRSSKIAA0.995unspETH_0003738526 SNSRSSSSSS0.997unspETH_0003738527 SSRSSSSSSS0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India