LdBPK_040850.1 | rhomboid-like protein

_IDPredictionOTHERSPmTPCS_Position
LdBPK_040850.1OTHER0.6764490.0005750.322976
No Results

  • Fasta :-

    >LdBPK_040850.1 MQQPCFFAARCGAQRISRLATAAAARVSSSPAIMRCAMSSSTSSNRLLTVHASATAMRAL HSGSLPVSSTLTQRKLSALPTSLTALRTMRGAATIVVPARASFFAGAAVSPMATACSSLF AAQRCYGVARATRVARSPKKSSEGGGQLQGVNKLARYKGEEEDEQKDGGGNEQESPFNMN SGPGYLPFPPPFHTINIVMILFLANVMCYLIMNLGNDDWRDFVVEHCTLSHENWTRIYPL FTNAFYQENILQLLIDCWLLWQFGDTMLGFLGNTRMTFFALLCTLGGSVIHVARQKFELY YGMDELEVRGRCYGPNPFIMGLVAIEGLIFRHLNFIQQPPIPFLVLTAFVMVIDVWRIFT TKPEEHGAATGGALMAYLFWALPTRMLGLDKLTATL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_040850.1.fa Sequence name : LdBPK_040850 Sequence length : 396 VALUES OF COMPUTED PARAMETERS Coef20 : 4.607 CoefTot : 3.479 ChDiff : 8 ZoneTo : 159 KR : 21 DE : 1 CleavSite : 158 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.947 2.376 0.330 0.776 MesoH : 0.408 0.870 -0.100 0.433 MuHd_075 : 31.792 22.543 9.799 7.931 MuHd_095 : 45.180 24.693 11.013 11.008 MuHd_100 : 47.399 23.439 12.770 9.664 MuHd_105 : 54.337 25.776 13.749 10.771 Hmax_075 : 14.500 14.400 1.899 4.650 Hmax_095 : 14.300 17.500 3.643 5.940 Hmax_100 : 9.000 6.200 1.082 3.240 Hmax_105 : 8.400 14.467 0.986 3.860 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0003 0.9997 DFMC : 0.0000 1.0000 This protein is probably imported in mitochondria. f(Ser) = 0.1447 f(Arg) = 0.1006 CMi = 0.68595 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 396 LdBPK_040850.1 MQQPCFFAARCGAQRISRLATAAAARVSSSPAIMRCAMSSSTSSNRLLTVHASATAMRALHSGSLPVSSTLTQRKLSALP 80 TSLTALRTMRGAATIVVPARASFFAGAAVSPMATACSSLFAAQRCYGVARATRVARSPKKSSEGGGQLQGVNKLARYKGE 160 EEDEQKDGGGNEQESPFNMNSGPGYLPFPPPFHTINIVMILFLANVMCYLIMNLGNDDWRDFVVEHCTLSHENWTRIYPL 240 FTNAFYQENILQLLIDCWLLWQFGDTMLGFLGNTRMTFFALLCTLGGSVIHVARQKFELYYGMDELEVRGRCYGPNPFIM 320 GLVAIEGLIFRHLNFIQQPPIPFLVLTAFVMVIDVWRIFTTKPEEHGAATGGALMAYLFWALPTRMLGLDKLTATL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_040850.1 10 PCFFAAR|CG 0.084 . LdBPK_040850.1 15 ARCGAQR|IS 0.085 . LdBPK_040850.1 18 GAQRISR|LA 0.314 . LdBPK_040850.1 26 ATAAAAR|VS 0.081 . LdBPK_040850.1 35 SSPAIMR|CA 0.106 . LdBPK_040850.1 46 SSTSSNR|LL 0.085 . LdBPK_040850.1 58 ASATAMR|AL 0.111 . LdBPK_040850.1 74 SSTLTQR|KL 0.103 . LdBPK_040850.1 75 STLTQRK|LS 0.062 . LdBPK_040850.1 87 TSLTALR|TM 0.078 . LdBPK_040850.1 90 TALRTMR|GA 0.310 . LdBPK_040850.1 100 TIVVPAR|AS 0.122 . LdBPK_040850.1 124 SLFAAQR|CY 0.117 . LdBPK_040850.1 130 RCYGVAR|AT 0.120 . LdBPK_040850.1 133 GVARATR|VA 0.230 . LdBPK_040850.1 136 RATRVAR|SP 0.482 . LdBPK_040850.1 139 RVARSPK|KS 0.282 . LdBPK_040850.1 140 VARSPKK|SS 0.228 . LdBPK_040850.1 153 QLQGVNK|LA 0.074 . LdBPK_040850.1 156 GVNKLAR|YK 0.198 . LdBPK_040850.1 158 NKLARYK|GE 0.064 . LdBPK_040850.1 166 EEEDEQK|DG 0.076 . LdBPK_040850.1 220 LGNDDWR|DF 0.105 . LdBPK_040850.1 236 SHENWTR|IY 0.085 . LdBPK_040850.1 275 GFLGNTR|MT 0.083 . LdBPK_040850.1 294 SVIHVAR|QK 0.102 . LdBPK_040850.1 296 IHVARQK|FE 0.065 . LdBPK_040850.1 309 MDELEVR|GR 0.085 . LdBPK_040850.1 311 ELEVRGR|CY 0.123 . LdBPK_040850.1 331 IEGLIFR|HL 0.084 . LdBPK_040850.1 357 MVIDVWR|IF 0.095 . LdBPK_040850.1 362 WRIFTTK|PE 0.075 . LdBPK_040850.1 385 FWALPTR|ML 0.093 . LdBPK_040850.1 391 RMLGLDK|LT 0.058 . ____________________________^_________________

  • Fasta :-

    >LdBPK_040850.1 ATGCAGCAGCCATGCTTCTTCGCCGCGCGCTGTGGCGCACAGCGGATTTCACGGCTGGCG ACAGCGGCGGCAGCAAGAGTGTCGTCATCGCCCGCGATAATGCGCTGCGCCATGAGCAGC AGCACTAGCAGCAACCGTCTTCTCACGGTGCACGCCTCAGCAACCGCCATGCGCGCCCTC CATTCGGGATCGCTGCCTGTGTCGTCGACGCTGACGCAGCGGAAGCTGTCGGCGCTTCCG ACAAGCCTGACCGCCCTTCGCACGATGCGCGGCGCCGCTACCATTGTAGTCCCGGCGCGC GCCTCGTTCTTCGCGGGAGCCGCGGTCTCGCCGATGGCGACAGCGTGCTCGTCGCTCTTC GCTGCGCAGCGCTGCTACGGCGTCGCCAGAGCCACCCGCGTTGCGCGCTCCCCAAAGAAG AGCAGCGAAGGTGGCGGCCAGCTGCAGGGCGTCAACAAGCTCGCACGCTACAAGGGAGAG GAAGAGGACGAGCAGAAGGATGGTGGTGGCAACGAGCAGGAGAGCCCGTTCAACATGAAC TCCGGCCCAGGCTACTTGCCCTTCCCCCCGCCCTTCCACACCATCAACATCGTCATGATC CTCTTCCTCGCCAACGTGATGTGCTACCTGATCATGAACCTCGGCAATGACGACTGGCGC GACTTCGTGGTCGAGCACTGCACTCTTTCACATGAGAACTGGACACGCATTTACCCCCTC TTCACGAACGCCTTCTATCAAGAGAACATCCTCCAGCTGCTCATCGACTGCTGGCTTCTC TGGCAGTTCGGCGACACGATGCTGGGCTTCCTGGGCAACACGCGCATGACCTTCTTCGCG CTGCTCTGCACGCTCGGCGGTAGCGTCATCCATGTGGCGCGGCAGAAATTCGAGCTGTAC TACGGAATGGACGAGTTGGAGGTACGTGGCCGCTGCTACGGACCCAACCCGTTCATCATG GGTCTCGTGGCGATAGAGGGGCTCATCTTCCGTCACCTGAACTTCATTCAGCAGCCGCCG ATCCCCTTCCTCGTGCTGACGGCGTTCGTTATGGTGATCGACGTCTGGCGCATCTTCACG ACGAAGCCGGAGGAGCACGGCGCGGCCACCGGCGGTGCCCTCATGGCGTACCTCTTCTGG GCCCTGCCGACTCGCATGCTGGGTCTCGACAAGCTCACTGCCACGCTCTAA
  • Download Fasta

  • Fasta :-

    MQQPCFFAARCGAQRISRLATAAAARVSSSPAIMRCAMSSSTSSNRLLTVHASATAMRAL HSGSLPVSSTLTQRKLSALPTSLTALRTMRGAATIVVPARASFFAGAAVSPMATACSSLF AAQRCYGVARATRVARSPKKSSEGGGQLQGVNKLARYKGEEEDEQKDGGGNEQESPFNMN SGPGYLPFPPPFHTINIVMILFLANVMCYLIMNLGNDDWRDFVVEHCTLSHENWTRIYPL FTNAFYQENILQLLIDCWLLWQFGDTMLGFLGNTRMTFFALLCTLGGSVIHVARQKFELY YGMDELEVRGRCYGPNPFIMGLVAIEGLIFRHLNFIQQPPIPFLVLTAFVMVIDVWRIFT TKPEEHGAATGGALMAYLFWALPTRMLGLDKLTATL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_040850.1141 SSPKKSSEGG0.996unspLdBPK_040850.1141 SSPKKSSEGG0.996unspLdBPK_040850.1141 SSPKKSSEGG0.996unspLdBPK_040850.177 SQRKLSALPT0.991unspLdBPK_040850.1137 SRVARSPKKS0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India