LdBPK_044280.1 | lipophosphoglycan biosynthetic protein (fragment)

UniProt_ID: E9BRM6

Computed_GO_Component_IDs: GO:0005839
Computed_GO_Components: proteasome core complex
Computed_GO_Function_IDs: GO:0004298
Computed_GO_Functions: threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	LdBPK_044280.1	OTHER	0.625504	0.180652	0.193844

No Results

Fasta :-
>LdBPK_044280.1 MASGGSVIAIKYNGGVLMAADTLLSYGSLAKWPNIPRIKLL
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_044280.1.fa Sequence name : LdBPK_044280 Sequence length : 41 VALUES OF COMPUTED PARAMETERS Coef20 : 3.823 CoefTot : -1.026 ChDiff : 3 ZoneTo : 38 KR : 3 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.029 1.094 0.095 0.494 MesoH : 0.010 0.010 0.010 0.010 MuHd_075 : 23.452 18.016 6.271 4.491 MuHd_095 : 13.757 12.873 4.155 4.080 MuHd_100 : 14.037 15.524 4.602 4.247 MuHd_105 : 22.566 16.517 6.147 4.645 Hmax_075 : 14.233 11.200 2.540 5.960 Hmax_095 : 4.375 11.500 2.821 3.351 Hmax_100 : 10.900 16.400 1.919 4.720 Hmax_105 : 10.967 18.400 3.284 6.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9933 0.0067 DFMC : 0.9876 0.0124

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 41 LdBPK_044280.1 MASGGSVIAIKYNGGVLMAADTLLSYGSLAKWPNIPRIKLL 80 ......................................... 80 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_044280.1 11 GSVIAIK|YN 0.099 . LdBPK_044280.1 31 SYGSLAK|WP 0.058 . LdBPK_044280.1 37 KWPNIPR|IK 0.069 . LdBPK_044280.1 39 PNIPRIK|LL 0.064 . ____________________________^_________________

Fasta :-
>LdBPK_044280.1 ATGGCGTCTGGCGGATCTGTCATCGCGATCAAATACAACGGCGGCGTACTGATGGCGGCG GACACGCTGCTGTCCTACGGGTCTCTCGCCAAGTGGCCCAACATCCCGCGCATCAAGCTG CTC
Download Fasta

Fasta :-

MASGGSVIAIKYNGGVLMAADTLLSYGSLAKWPNIPRIKLL

Proteasome subunits

title: active site
coordinates: G5,D21,L23,R37

No Results

LdBPK_044280.1 | lipophosphoglycan biosynthetic protein (fragment)

ID's

UniProt_ID: E9BRM6

GEO Functions

Computed_GO_Component_IDs: GO:0005839

Computed_GO_Components: proteasome core complex

Computed_GO_Function_IDs: GO:0004298

Computed_GO_Functions: threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India