LdBPK_070100.1 | Zinc finger, C3HC4 type (RING finger), putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0046872      GO:0005515      GO:0008270      

  • Computed_GO_Functions:  metal ion binding      protein binding      zinc ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_070100.1OTHER0.9999970.0000030.000000
No Results

  • Fasta :-

    >LdBPK_070100.1 MRDSCRARTPSPSHLVPRDCEGASSNTCGSGGGDPTVRPNSTTARPRQRPHHHQQGPRRG RHFTDTQEGNGKSSRSSRGSVGGCVVPMWMNAPPNVVGGVERMANNSHQSSLSSFAAAVV NRPPGTSTSPTTQHKQWEAAARSTSGAASTSLAAAVAFGPSACVVASGAAVSGTQRSDHS PTGTAARVAQMPLRGAPSAAATPQHDCPSRDSSGYPQGSSPTSLRLHATASTATGTATCG NLADAQRRRRLKPPPIMSDVASASGRRSCSCPSTRSATAIEATIASSPLATYTVVAASPR AAAAVTHPARTLRSAGSPASPSDMLPQGPVPPPNPDFKPLGLWSTSPASAAASTSATTLE LKASTATASGADVGSLLTHEMDGGVVIVDPHQTPDDLVCGVCMCVCRQPTAAACGHLFCR RCLQSWMQENRTATCPLDRTPIRVELLHTDARAQRQINALRCRCPASLSRASQWALRQLG SASHVLGDRAVEDEADNDDARGDERARREHPRCTWAGCVSDAEAHLRQCPYIIIECPFAK RGCSAEMPRVDMAGHLKSGVADHLLLVSQALDASTEQYRVLQGEVEVLRQRCPMHYPVAL PDVPTGGPAGISEPAVSLYSLSLHGADVPAAALAPALVIAGGGGSSSGATPIAITAFPEE VSPESGSPTRVVGPFGHGASAAVDYPFPVFSHSQPPYPPPHHGSSTIATQTNVRRHAATD DMLLVAAHRMSSGHDATMPMPADTTALCTSPHFGAPPTSVSGANTAAAAPTFALPAGAAA PIPAQVASAPPRAAPVVGSGHCVDRFVWVITDMASRQAPCYSRSFTSHGLSWYVGIDTTA SWEQCGVYLFTEGHEHRVDFRVILYHEDPARDVVHVVRDWQEDYIGKGWGPLRFINRFTL EQDGFLVSGCLRVGIEVVSGPY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_070100.1.fa Sequence name : LdBPK_070100 Sequence length : 922 VALUES OF COMPUTED PARAMETERS Coef20 : 4.217 CoefTot : -0.097 ChDiff : 4 ZoneTo : 18 KR : 4 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.712 1.700 0.423 0.687 MesoH : 0.649 0.638 -0.033 0.413 MuHd_075 : 30.726 18.124 7.809 5.816 MuHd_095 : 34.389 19.300 9.783 6.248 MuHd_100 : 21.281 15.933 7.312 3.372 MuHd_105 : 5.078 7.069 2.548 1.210 Hmax_075 : 7.233 3.150 -0.184 1.983 Hmax_095 : -1.100 5.500 -0.033 0.570 Hmax_100 : -0.500 5.600 0.003 0.700 Hmax_105 : -4.550 4.317 -0.155 0.070 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7176 0.2824 DFMC : 0.8371 0.1629
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 922 LdBPK_070100.1 MRDSCRARTPSPSHLVPRDCEGASSNTCGSGGGDPTVRPNSTTARPRQRPHHHQQGPRRGRHFTDTQEGNGKSSRSSRGS 80 VGGCVVPMWMNAPPNVVGGVERMANNSHQSSLSSFAAAVVNRPPGTSTSPTTQHKQWEAAARSTSGAASTSLAAAVAFGP 160 SACVVASGAAVSGTQRSDHSPTGTAARVAQMPLRGAPSAAATPQHDCPSRDSSGYPQGSSPTSLRLHATASTATGTATCG 240 NLADAQRRRRLKPPPIMSDVASASGRRSCSCPSTRSATAIEATIASSPLATYTVVAASPRAAAAVTHPARTLRSAGSPAS 320 PSDMLPQGPVPPPNPDFKPLGLWSTSPASAAASTSATTLELKASTATASGADVGSLLTHEMDGGVVIVDPHQTPDDLVCG 400 VCMCVCRQPTAAACGHLFCRRCLQSWMQENRTATCPLDRTPIRVELLHTDARAQRQINALRCRCPASLSRASQWALRQLG 480 SASHVLGDRAVEDEADNDDARGDERARREHPRCTWAGCVSDAEAHLRQCPYIIIECPFAKRGCSAEMPRVDMAGHLKSGV 560 ADHLLLVSQALDASTEQYRVLQGEVEVLRQRCPMHYPVALPDVPTGGPAGISEPAVSLYSLSLHGADVPAAALAPALVIA 640 GGGGSSSGATPIAITAFPEEVSPESGSPTRVVGPFGHGASAAVDYPFPVFSHSQPPYPPPHHGSSTIATQTNVRRHAATD 720 DMLLVAAHRMSSGHDATMPMPADTTALCTSPHFGAPPTSVSGANTAAAAPTFALPAGAAAPIPAQVASAPPRAAPVVGSG 800 HCVDRFVWVITDMASRQAPCYSRSFTSHGLSWYVGIDTTASWEQCGVYLFTEGHEHRVDFRVILYHEDPARDVVHVVRDW 880 QEDYIGKGWGPLRFINRFTLEQDGFLVSGCLRVGIEVVSGPY 960 .............................................................................P.. 80 ................................................................................ 160 ................................................................................ 240 ........................................................................P....... 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 .......................................... 960 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LdBPK_070100.1 2 -----MR|DS 0.132 . LdBPK_070100.1 6 -MRDSCR|AR 0.101 . LdBPK_070100.1 8 RDSCRAR|TP 0.132 . LdBPK_070100.1 18 PSHLVPR|DC 0.180 . LdBPK_070100.1 38 GGDPTVR|PN 0.082 . LdBPK_070100.1 45 PNSTTAR|PR 0.100 . LdBPK_070100.1 47 STTARPR|QR 0.085 . LdBPK_070100.1 49 TARPRQR|PH 0.123 . LdBPK_070100.1 58 HHQQGPR|RG 0.086 . LdBPK_070100.1 59 HQQGPRR|GR 0.162 . LdBPK_070100.1 61 QGPRRGR|HF 0.301 . LdBPK_070100.1 72 TQEGNGK|SS 0.087 . LdBPK_070100.1 75 GNGKSSR|SS 0.228 . LdBPK_070100.1 78 KSSRSSR|GS 0.561 *ProP* LdBPK_070100.1 102 VVGGVER|MA 0.117 . LdBPK_070100.1 122 AAAVVNR|PP 0.126 . LdBPK_070100.1 135 SPTTQHK|QW 0.084 . LdBPK_070100.1 142 QWEAAAR|ST 0.253 . LdBPK_070100.1 176 AVSGTQR|SD 0.126 . LdBPK_070100.1 187 PTGTAAR|VA 0.098 . LdBPK_070100.1 194 VAQMPLR|GA 0.109 . LdBPK_070100.1 210 QHDCPSR|DS 0.135 . LdBPK_070100.1 225 SSPTSLR|LH 0.079 . LdBPK_070100.1 247 NLADAQR|RR 0.071 . LdBPK_070100.1 248 LADAQRR|RR 0.099 . LdBPK_070100.1 249 ADAQRRR|RL 0.137 . LdBPK_070100.1 250 DAQRRRR|LK 0.296 . LdBPK_070100.1 252 QRRRRLK|PP 0.119 . LdBPK_070100.1 266 VASASGR|RS 0.104 . LdBPK_070100.1 267 ASASGRR|SC 0.160 . LdBPK_070100.1 275 CSCPSTR|SA 0.293 . LdBPK_070100.1 300 VVAASPR|AA 0.135 . LdBPK_070100.1 310 AVTHPAR|TL 0.089 . LdBPK_070100.1 313 HPARTLR|SA 0.593 *ProP* LdBPK_070100.1 338 PPNPDFK|PL 0.076 . LdBPK_070100.1 362 ATTLELK|AS 0.056 . LdBPK_070100.1 407 VCMCVCR|QP 0.099 . LdBPK_070100.1 420 CGHLFCR|RC 0.091 . LdBPK_070100.1 421 GHLFCRR|CL 0.107 . LdBPK_070100.1 431 SWMQENR|TA 0.102 . LdBPK_070100.1 439 ATCPLDR|TP 0.081 . LdBPK_070100.1 443 LDRTPIR|VE 0.074 . LdBPK_070100.1 452 LLHTDAR|AQ 0.102 . LdBPK_070100.1 455 TDARAQR|QI 0.320 . LdBPK_070100.1 461 RQINALR|CR 0.076 . LdBPK_070100.1 463 INALRCR|CP 0.078 . LdBPK_070100.1 470 CPASLSR|AS 0.105 . LdBPK_070100.1 477 ASQWALR|QL 0.109 . LdBPK_070100.1 489 SHVLGDR|AV 0.121 . LdBPK_070100.1 501 ADNDDAR|GD 0.123 . LdBPK_070100.1 505 DARGDER|AR 0.082 . LdBPK_070100.1 507 RGDERAR|RE 0.075 . LdBPK_070100.1 508 GDERARR|EH 0.303 . LdBPK_070100.1 512 ARREHPR|CT 0.188 . LdBPK_070100.1 527 DAEAHLR|QC 0.088 . LdBPK_070100.1 540 IECPFAK|RG 0.066 . LdBPK_070100.1 541 ECPFAKR|GC 0.192 . LdBPK_070100.1 549 CSAEMPR|VD 0.095 . LdBPK_070100.1 557 DMAGHLK|SG 0.067 . LdBPK_070100.1 579 ASTEQYR|VL 0.086 . LdBPK_070100.1 589 GEVEVLR|QR 0.075 . LdBPK_070100.1 591 VEVLRQR|CP 0.071 . LdBPK_070100.1 670 ESGSPTR|VV 0.167 . LdBPK_070100.1 714 ATQTNVR|RH 0.073 . LdBPK_070100.1 715 TQTNVRR|HA 0.154 . LdBPK_070100.1 729 LLVAAHR|MS 0.108 . LdBPK_070100.1 792 VASAPPR|AA 0.157 . LdBPK_070100.1 805 SGHCVDR|FV 0.228 . LdBPK_070100.1 816 ITDMASR|QA 0.079 . LdBPK_070100.1 823 QAPCYSR|SF 0.108 . LdBPK_070100.1 857 TEGHEHR|VD 0.095 . LdBPK_070100.1 861 EHRVDFR|VI 0.090 . LdBPK_070100.1 871 YHEDPAR|DV 0.173 . LdBPK_070100.1 878 DVVHVVR|DW 0.098 . LdBPK_070100.1 887 QEDYIGK|GW 0.072 . LdBPK_070100.1 893 KGWGPLR|FI 0.091 . LdBPK_070100.1 897 PLRFINR|FT 0.111 . LdBPK_070100.1 912 LVSGCLR|VG 0.082 . ____________________________^_________________

  • Fasta :-

    >LdBPK_070100.1 ATGCGAGATTCCTGTCGAGCGCGCACGCCGTCTCCGTCGCATCTCGTACCGCGGGACTGC GAAGGTGCCTCCAGTAACACCTGTGGCAGCGGTGGCGGTGACCCCACTGTGCGACCGAAC TCGACTACGGCGCGTCCGCGACAACGTCCGCACCACCACCAGCAGGGCCCTCGCAGGGGG CGCCACTTCACAGACACACAGGAGGGTAACGGCAAGAGCAGCCGCTCGAGCCGTGGCAGC GTCGGCGGCTGCGTCGTGCCGATGTGGATGAATGCGCCTCCGAATGTGGTGGGCGGCGTT GAGAGGATGGCAAACAACTCACACCAGAGCTCGCTGTCGTCGTTTGCGGCCGCGGTGGTG AATCGCCCGCCAGGGACCTCCACATCTCCGACCACGCAGCACAAGCAGTGGGAGGCGGCT GCGCGTTCGACGAGTGGAGCTGCCTCGACCTCGCTGGCTGCGGCCGTCGCGTTCGGCCCA TCGGCGTGCGTGGTGGCAAGCGGTGCCGCTGTTTCAGGAACGCAACGTAGCGACCACAGT CCCACTGGCACTGCAGCAAGGGTAGCGCAGATGCCATTGCGGGGTGCGCCCAGCGCGGCT GCAACACCGCAACACGACTGCCCATCGCGTGATTCGTCGGGGTATCCTCAGGGGTCATCC CCCACCTCCCTTCGCCTTCACGCGACTGCCTCAACAGCTACCGGCACCGCCACCTGCGGC AACCTCGCTGATGCGCAGCGCCGCCGCAGGCTCAAGCCACCGCCAATCATGAGCGACGTT GCCAGTGCCTCGGGTCGTCGCTCGTGCTCGTGCCCCAGTACTCGCAGCGCCACGGCGATA GAGGCCACCATCGCGTCCTCTCCACTTGCGACCTACACCGTTGTGGCAGCAAGCCCGAGA GCGGCAGCGGCAGTGACGCACCCGGCTCGCACACTTCGAAGCGCCGGCAGCCCGGCGAGT CCAAGCGATATGCTACCACAGGGGCCCGTGCCACCCCCTAACCCCGACTTCAAGCCTCTT GGGCTGTGGAGCACCTCGCCTGCCTCCGCCGCCGCCTCAACTTCAGCGACCACTCTAGAG CTCAAGGCGTCAACGGCAACAGCGAGCGGCGCAGATGTCGGCAGTCTCCTCACGCACGAG ATGGACGGCGGCGTGGTCATCGTTGACCCTCACCAGACGCCGGACGATCTCGTCTGCGGT GTGTGTATGTGTGTGTGCCGGCAACCGACAGCAGCGGCGTGCGGGCATCTTTTCTGCCGT CGCTGCCTTCAATCGTGGATGCAGGAAAATCGGACTGCAACATGCCCGCTGGACCGAACC CCGATCCGGGTGGAGCTGCTGCACACCGACGCCCGCGCGCAGCGGCAGATCAACGCGCTG CGATGCCGCTGCCCCGCCTCGCTCTCTCGGGCATCGCAGTGGGCGTTGCGGCAGCTCGGG TCTGCGAGTCATGTGCTAGGCGACAGAGCAGTGGAGGACGAGGCGGACAATGATGACGCG AGGGGCGATGAACGCGCACGACGGGAGCACCCGCGATGTACGTGGGCTGGATGCGTGTCG GACGCTGAAGCACATTTGCGTCAGTGCCCGTACATCATCATCGAGTGCCCATTCGCCAAG CGCGGCTGCTCGGCGGAGATGCCACGGGTAGATATGGCGGGACACTTGAAGAGTGGCGTG GCGGACCACCTGCTGCTTGTCTCGCAGGCCCTCGACGCGTCCACGGAGCAGTACCGGGTC TTGCAGGGGGAGGTGGAGGTGCTGCGGCAACGCTGCCCCATGCATTATCCCGTTGCCCTC CCCGATGTGCCCACAGGCGGACCAGCCGGAATTTCGGAGCCGGCGGTGTCGCTGTACTCG TTATCCTTGCATGGAGCGGATGTGCCCGCAGCGGCGCTGGCACCGGCTCTCGTCATCGCC GGCGGCGGCGGCAGCAGCAGCGGTGCAACTCCCATTGCGATAACGGCGTTCCCAGAGGAA GTATCGCCGGAGAGCGGCTCCCCGACTCGAGTGGTGGGGCCGTTTGGCCACGGCGCATCC GCCGCGGTCGACTACCCGTTCCCTGTCTTTTCGCATTCGCAGCCGCCGTATCCACCTCCG CACCACGGTTCATCGACGATAGCCACGCAGACCAACGTGCGCCGGCACGCAGCTACCGAC GATATGCTGCTTGTTGCCGCCCACCGCATGTCCAGCGGACACGATGCCACAATGCCGATG CCGGCGGACACGACGGCGCTGTGCACTTCACCGCATTTTGGCGCACCACCGACCTCCGTG TCCGGCGCCAACACAGCAGCGGCGGCGCCGACCTTTGCCCTTCCTGCCGGTGCAGCAGCA CCGATCCCTGCCCAAGTTGCTAGCGCTCCTCCGCGTGCGGCGCCGGTGGTGGGCAGCGGC CACTGCGTGGATCGGTTTGTTTGGGTCATCACCGACATGGCGTCGCGACAGGCGCCATGC TACAGCCGCTCCTTTACCTCGCACGGCCTGTCATGGTATGTGGGCATTGACACCACCGCC TCATGGGAGCAGTGTGGAGTATACCTCTTCACCGAGGGTCACGAGCACCGTGTCGACTTC CGCGTGATCCTGTACCACGAGGACCCGGCACGTGACGTTGTGCACGTCGTGCGGGACTGG CAGGAGGACTACATTGGAAAAGGCTGGGGCCCACTGCGCTTCATCAACCGTTTCACGCTA GAGCAAGACGGCTTCCTCGTGAGCGGCTGCCTGCGCGTGGGGATCGAGGTGGTGAGTGGA CCGTACTGA
  • Download Fasta

  • Fasta :-

    MRDSCRARTPSPSHLVPRDCEGASSNTCGSGGGDPTVRPNSTTARPRQRPHHHQQGPRRG RHFTDTQEGNGKSSRSSRGSVGGCVVPMWMNAPPNVVGGVERMANNSHQSSLSSFAAAVV NRPPGTSTSPTTQHKQWEAAARSTSGAASTSLAAAVAFGPSACVVASGAAVSGTQRSDHS PTGTAARVAQMPLRGAPSAAATPQHDCPSRDSSGYPQGSSPTSLRLHATASTATGTATCG NLADAQRRRRLKPPPIMSDVASASGRRSCSCPSTRSATAIEATIASSPLATYTVVAASPR AAAAVTHPARTLRSAGSPASPSDMLPQGPVPPPNPDFKPLGLWSTSPASAAASTSATTLE LKASTATASGADVGSLLTHEMDGGVVIVDPHQTPDDLVCGVCMCVCRQPTAAACGHLFCR RCLQSWMQENRTATCPLDRTPIRVELLHTDARAQRQINALRCRCPASLSRASQWALRQLG SASHVLGDRAVEDEADNDDARGDERARREHPRCTWAGCVSDAEAHLRQCPYIIIECPFAK RGCSAEMPRVDMAGHLKSGVADHLLLVSQALDASTEQYRVLQGEVEVLRQRCPMHYPVAL PDVPTGGPAGISEPAVSLYSLSLHGADVPAAALAPALVIAGGGGSSSGATPIAITAFPEE VSPESGSPTRVVGPFGHGASAAVDYPFPVFSHSQPPYPPPHHGSSTIATQTNVRRHAATD DMLLVAAHRMSSGHDATMPMPADTTALCTSPHFGAPPTSVSGANTAAAAPTFALPAGAAA PIPAQVASAPPRAAPVVGSGHCVDRFVWVITDMASRQAPCYSRSFTSHGLSWYVGIDTTA SWEQCGVYLFTEGHEHRVDFRVILYHEDPARDVVHVVRDWQEDYIGKGWGPLRFINRFTL EQDGFLVSGCLRVGIEVVSGPY

  • title: putative substrate binding site
  • coordinates: Y848,G888,W889,G890
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_070100.176 SKSSRSSRGS0.995unspLdBPK_070100.176 SKSSRSSRGS0.995unspLdBPK_070100.176 SKSSRSSRGS0.995unspLdBPK_070100.177 SSSRSSRGSV0.993unspLdBPK_070100.180 SSSRGSVGGC0.994unspLdBPK_070100.1180 SRSDHSPTGT0.995unspLdBPK_070100.1213 SSRDSSGYPQ0.993unspLdBPK_070100.1264 SVASASGRRS0.99unspLdBPK_070100.1298 SVVAASPRAA0.996unspLdBPK_070100.1320 SGSPASPSDM0.996unspLdBPK_070100.1393 TDPHQTPDDL0.994unspLdBPK_070100.1544 SKRGCSAEMP0.992unspLdBPK_070100.1662 SPEEVSPESG0.993unspLdBPK_070100.1665 SVSPESGSPT0.992unspLdBPK_070100.1732 SHRMSSGHDA0.997unspLdBPK_070100.111 SARTPSPSHL0.993unspLdBPK_070100.141 SVRPNSTTAR0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India