LdBPK_120220.1 | hypothetical protein, unknown function

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_120220.1SP0.4827640.5026850.014551CS pos: 52-53. VAA-DT. Pr: 0.6295
No Results

  • Fasta :-

    >LdBPK_120220.1 MAPMRHGAADAAPMCLADRMKQRYRCPLSPLLMCTVLFAQFLLCSTSLPVAADTTITPLL NITSTDKADPDEYYKILLSQDATILAGSTTVLSSDGVAYPNLNMVKGLRSVPQVPGAPMA QSAPKRTNTALKAFRADVLSEFLVAMALLYLDSTDALPFARTAPIPSTYLPASYTGGASF VNPSFPTVPITLNMLLQHVSSLTETGLDLRAETAPSGAVSTLSAFVSSLFSTTTTTVFSA SQPGLSTSYTYSHANVAIVAYVVEQVLATSTNYSALSGIGEFVFTVVMPPLQLSNTFLLN RNGHVIEAAYPLRSGSSHDTVNHVARQVLDSRNTGILDSAPREASYFSDYMLFTTSADVA KLAAEVLVPGGFYHMRLGASMLQNTVPIAVPTMRYTEARTTGLFLFSANKLCSTMYAAIS YSGQAPYCRYNSATVSESAPPFGLVATGGTDELAIVCVPVVSNTKTFCSIAELSFSGTGC SRCSPAAAGGRAVGLAMVSLAHLTSEPMPVAPAPTPQSTARTFNGWFVFLGVAVTLVVVV VASYITDYLIQPPPPAKIIAPVVAGQIGLRSGTALNGPVGGGGAVGSSEVPVDGESPEAF RENGRDHDAEDLYSGADDEEQTPYLARSGDRARGSSSLRRRCRRRRRRRHNGEPNPASDG SYSSGDDGWGDDRDSVDRVSTGSRRPSPKGALRFDAYI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_120220.1.fa Sequence name : LdBPK_120220 Sequence length : 698 VALUES OF COMPUTED PARAMETERS Coef20 : 3.988 CoefTot : -0.184 ChDiff : -3 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.418 2.853 0.492 0.934 MesoH : 0.914 0.986 0.017 0.472 MuHd_075 : 19.717 8.483 4.016 4.867 MuHd_095 : 21.289 15.739 7.498 2.907 MuHd_100 : 11.265 12.853 5.237 1.198 MuHd_105 : 4.261 8.462 2.753 1.042 Hmax_075 : 10.000 9.000 1.400 4.180 Hmax_095 : 16.400 15.500 3.526 4.530 Hmax_100 : 4.400 9.200 0.617 2.530 Hmax_105 : 6.300 9.000 0.748 3.127 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9836 0.0164 DFMC : 0.9896 0.0104
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 698 LdBPK_120220.1 MAPMRHGAADAAPMCLADRMKQRYRCPLSPLLMCTVLFAQFLLCSTSLPVAADTTITPLLNITSTDKADPDEYYKILLSQ 80 DATILAGSTTVLSSDGVAYPNLNMVKGLRSVPQVPGAPMAQSAPKRTNTALKAFRADVLSEFLVAMALLYLDSTDALPFA 160 RTAPIPSTYLPASYTGGASFVNPSFPTVPITLNMLLQHVSSLTETGLDLRAETAPSGAVSTLSAFVSSLFSTTTTTVFSA 240 SQPGLSTSYTYSHANVAIVAYVVEQVLATSTNYSALSGIGEFVFTVVMPPLQLSNTFLLNRNGHVIEAAYPLRSGSSHDT 320 VNHVARQVLDSRNTGILDSAPREASYFSDYMLFTTSADVAKLAAEVLVPGGFYHMRLGASMLQNTVPIAVPTMRYTEART 400 TGLFLFSANKLCSTMYAAISYSGQAPYCRYNSATVSESAPPFGLVATGGTDELAIVCVPVVSNTKTFCSIAELSFSGTGC 480 SRCSPAAAGGRAVGLAMVSLAHLTSEPMPVAPAPTPQSTARTFNGWFVFLGVAVTLVVVVVASYITDYLIQPPPPAKIIA 560 PVVAGQIGLRSGTALNGPVGGGGAVGSSEVPVDGESPEAFRENGRDHDAEDLYSGADDEEQTPYLARSGDRARGSSSLRR 640 RCRRRRRRRHNGEPNPASDGSYSSGDDGWGDDRDSVDRVSTGSRRPSPKGALRFDAYI 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ......P.P................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LdBPK_120220.1 5 --MAPMR|HG 0.081 . LdBPK_120220.1 19 PMCLADR|MK 0.074 . LdBPK_120220.1 21 CLADRMK|QR 0.065 . LdBPK_120220.1 23 ADRMKQR|YR 0.109 . LdBPK_120220.1 25 RMKQRYR|CP 0.077 . LdBPK_120220.1 67 NITSTDK|AD 0.055 . LdBPK_120220.1 75 DPDEYYK|IL 0.059 . LdBPK_120220.1 106 PNLNMVK|GL 0.067 . LdBPK_120220.1 109 NMVKGLR|SV 0.189 . LdBPK_120220.1 125 MAQSAPK|RT 0.084 . LdBPK_120220.1 126 AQSAPKR|TN 0.200 . LdBPK_120220.1 132 RTNTALK|AF 0.073 . LdBPK_120220.1 135 TALKAFR|AD 0.085 . LdBPK_120220.1 161 DALPFAR|TA 0.078 . LdBPK_120220.1 210 ETGLDLR|AE 0.065 . LdBPK_120220.1 301 NTFLLNR|NG 0.082 . LdBPK_120220.1 313 EAAYPLR|SG 0.110 . LdBPK_120220.1 326 TVNHVAR|QV 0.298 . LdBPK_120220.1 332 RQVLDSR|NT 0.087 . LdBPK_120220.1 342 ILDSAPR|EA 0.090 . LdBPK_120220.1 361 TSADVAK|LA 0.091 . LdBPK_120220.1 376 GGFYHMR|LG 0.092 . LdBPK_120220.1 394 IAVPTMR|YT 0.133 . LdBPK_120220.1 399 MRYTEAR|TT 0.165 . LdBPK_120220.1 410 FLFSANK|LC 0.058 . LdBPK_120220.1 429 GQAPYCR|YN 0.115 . LdBPK_120220.1 465 PVVSNTK|TF 0.055 . LdBPK_120220.1 482 SGTGCSR|CS 0.077 . LdBPK_120220.1 491 PAAAGGR|AV 0.149 . LdBPK_120220.1 521 TPQSTAR|TF 0.129 . LdBPK_120220.1 557 QPPPPAK|II 0.075 . LdBPK_120220.1 570 AGQIGLR|SG 0.092 . LdBPK_120220.1 601 ESPEAFR|EN 0.085 . LdBPK_120220.1 605 AFRENGR|DH 0.110 . LdBPK_120220.1 627 QTPYLAR|SG 0.149 . LdBPK_120220.1 631 LARSGDR|AR 0.080 . LdBPK_120220.1 633 RSGDRAR|GS 0.122 . LdBPK_120220.1 639 RGSSSLR|RR 0.076 . LdBPK_120220.1 640 GSSSLRR|RC 0.135 . LdBPK_120220.1 641 SSSLRRR|CR 0.161 . LdBPK_120220.1 643 SLRRRCR|RR 0.225 . LdBPK_120220.1 644 LRRRCRR|RR 0.363 . LdBPK_120220.1 645 RRRCRRR|RR 0.144 . LdBPK_120220.1 646 RRCRRRR|RR 0.440 . LdBPK_120220.1 647 RCRRRRR|RR 0.575 *ProP* LdBPK_120220.1 648 CRRRRRR|RH 0.485 . LdBPK_120220.1 649 RRRRRRR|HN 0.706 *ProP* LdBPK_120220.1 673 DGWGDDR|DS 0.082 . LdBPK_120220.1 678 DRDSVDR|VS 0.088 . LdBPK_120220.1 684 RVSTGSR|RP 0.093 . LdBPK_120220.1 685 VSTGSRR|PS 0.130 . LdBPK_120220.1 689 SRRPSPK|GA 0.091 . LdBPK_120220.1 693 SPKGALR|FD 0.099 . ____________________________^_________________

  • Fasta :-

    >LdBPK_120220.1 ATGGCCCCCATGCGTCATGGCGCTGCGGATGCCGCGCCGATGTGCCTCGCTGACCGCATG AAGCAACGGTATAGGTGTCCGCTGTCGCCTCTACTCATGTGCACGGTACTCTTCGCGCAG TTTCTGCTCTGTAGCACCTCCCTGCCCGTCGCGGCCGACACGACCATCACGCCCCTCCTC AACATCACCTCCACCGACAAGGCGGACCCCGATGAGTACTACAAGATATTGCTCTCCCAG GACGCCACCATCCTTGCGGGCAGCACCACCGTCCTCAGCAGCGACGGAGTCGCCTACCCG AACCTCAACATGGTGAAAGGACTGCGGTCCGTCCCCCAGGTTCCTGGGGCGCCAATGGCG CAGAGCGCTCCTAAGCGGACCAACACGGCCTTGAAGGCCTTCCGCGCCGACGTCCTATCG GAGTTCCTCGTAGCGATGGCACTCCTCTACCTCGACTCCACCGACGCGCTGCCCTTCGCA CGCACGGCGCCGATCCCGTCCACGTACCTGCCAGCCTCCTACACAGGCGGCGCCAGCTTC GTCAACCCGTCGTTTCCCACCGTGCCCATCACCCTCAACATGCTGCTGCAGCACGTTTCT TCGCTCACCGAGACGGGCCTCGACCTTCGCGCCGAAACTGCGCCGTCCGGCGCTGTGTCG ACCCTCTCGGCCTTTGTCAGCTCCCTCTTTTCCACCACGACCACAACAGTGTTCAGCGCT AGCCAGCCGGGGTTGTCTACCAGCTACACCTACTCGCATGCCAACGTGGCGATCGTCGCC TACGTGGTGGAGCAGGTCTTGGCTACGTCGACGAACTACTCGGCGCTCTCCGGCATCGGC GAGTTCGTCTTCACCGTCGTGATGCCACCACTGCAGCTGTCGAACACGTTTTTGCTGAAC CGCAACGGTCACGTCATTGAGGCAGCCTACCCCTTGAGGAGCGGCAGCAGCCATGACACG GTGAATCACGTCGCCCGCCAAGTCCTTGACAGCCGCAACACCGGCATCCTGGACAGCGCT CCGAGGGAAGCCTCGTACTTCTCCGACTACATGCTCTTTACGACCAGCGCAGACGTGGCG AAGTTGGCGGCAGAGGTGCTCGTGCCGGGCGGCTTTTACCACATGCGACTTGGCGCCTCG ATGCTCCAGAACACGGTCCCCATTGCCGTGCCTACGATGCGCTACACGGAGGCACGCACA ACCGGCCTCTTCCTGTTCAGCGCGAACAAGCTGTGCTCTACAATGTACGCCGCCATCTCC TACAGCGGCCAAGCGCCGTACTGCCGCTACAACTCCGCGACCGTGTCCGAGTCAGCGCCG CCCTTCGGGCTGGTCGCCACAGGTGGCACGGATGAGCTCGCCATCGTGTGCGTCCCCGTC GTGAGCAACACGAAGACGTTCTGCTCGATCGCGGAGCTTTCCTTCTCAGGCACAGGCTGC AGCAGGTGCAGCCCCGCAGCGGCGGGGGGCCGTGCCGTCGGCCTTGCCATGGTGAGCCTG GCGCACTTGACAAGTGAACCGATGCCAGTGGCGCCAGCCCCGACGCCGCAGTCGACAGCT CGCACGTTTAACGGGTGGTTCGTGTTCCTGGGGGTGGCCGTCACACTGGTGGTTGTGGTC GTCGCCTCCTACATCACCGACTACCTCATCCAGCCGCCGCCGCCAGCGAAGATTATAGCA CCCGTCGTGGCGGGTCAGATCGGCCTGCGGAGCGGCACCGCGCTGAATGGCCCTGTTGGC GGCGGCGGCGCAGTCGGCAGCTCGGAAGTGCCCGTTGACGGTGAGTCCCCCGAGGCGTTC CGCGAAAACGGTAGAGACCATGACGCTGAGGACCTGTACAGTGGCGCCGACGACGAGGAA CAGACGCCGTACCTCGCGCGCAGCGGTGACCGTGCTCGCGGCAGCTCGTCACTGCGGCGG CGTTGCCGGCGCCGGCGCCGGCGCCGTCACAACGGCGAGCCGAATCCGGCCAGTGACGGC TCCTACTCCAGCGGCGACGACGGCTGGGGCGACGACCGGGACAGCGTAGACCGCGTCTCC ACGGGGTCGCGGCGGCCGAGCCCGAAAGGCGCTCTGCGCTTTGATGCCTACATATAG
  • Download Fasta

  • Fasta :-

    MAPMRHGAADAAPMCLADRMKQRYRCPLSPLLMCTVLFAQFLLCSTSLPVAADTTITPLL NITSTDKADPDEYYKILLSQDATILAGSTTVLSSDGVAYPNLNMVKGLRSVPQVPGAPMA QSAPKRTNTALKAFRADVLSEFLVAMALLYLDSTDALPFARTAPIPSTYLPASYTGGASF VNPSFPTVPITLNMLLQHVSSLTETGLDLRAETAPSGAVSTLSAFVSSLFSTTTTTVFSA SQPGLSTSYTYSHANVAIVAYVVEQVLATSTNYSALSGIGEFVFTVVMPPLQLSNTFLLN RNGHVIEAAYPLRSGSSHDTVNHVARQVLDSRNTGILDSAPREASYFSDYMLFTTSADVA KLAAEVLVPGGFYHMRLGASMLQNTVPIAVPTMRYTEARTTGLFLFSANKLCSTMYAAIS YSGQAPYCRYNSATVSESAPPFGLVATGGTDELAIVCVPVVSNTKTFCSIAELSFSGTGC SRCSPAAAGGRAVGLAMVSLAHLTSEPMPVAPAPTPQSTARTFNGWFVFLGVAVTLVVVV VASYITDYLIQPPPPAKIIAPVVAGQIGLRSGTALNGPVGGGGAVGSSEVPVDGESPEAF RENGRDHDAEDLYSGADDEEQTPYLARSGDRARGSSSLRRRCRRRRRRRHNGEPNPASDG SYSSGDDGWGDDRDSVDRVSTGSRRPSPKGALRFDAYI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_120220.1622 TDEEQTPYLA0.991unspLdBPK_120220.1622 TDEEQTPYLA0.991unspLdBPK_120220.1622 TDEEQTPYLA0.991unspLdBPK_120220.1663 SDGSYSSGDD0.992unspLdBPK_120220.1675 SDDRDSVDRV0.993unspLdBPK_120220.1680 SVDRVSTGSR0.994unspLdBPK_120220.1687 SSRRPSPKGA0.998unspLdBPK_120220.1316 SLRSGSSHDT0.997unspLdBPK_120220.1596 SVDGESPEAF0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India