LdBPK_130570.1 | Metallopeptidase family M24, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005634      

  • Curated_GO_Components:  nucleus      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_130570.1OTHER0.9998860.0000030.000111
No Results

  • Fasta :-

    >LdBPK_130570.1 MGRGYSASRSKSGRPTLRMKRSRSMSLHALKKNMDAHEAAKAANGGSAEASSLSSAATTE VPRKTLKVVRQRRAPSSLLSSSSPATASSTPAAAKVAMKGAATKVKSADGRGRTATSSPG PRSQSAAFRRNLEDLERQFDAAMEASEDEDETVMNTTTMTKYKECGRVVDAVLDQLAAAC VPGANTKVLCDTGDEEIASRLKGLFVKTKGADGKRLARGISYPTNVSVNEMLCNDSPYRV EDGAILKDGDVVKLHVGCHLDGYPVSAARTVVVTTRAASAVTEGDEEEAQRRRSSTAATL SSRSAVGNTIEAARVALLAMMHALRPGTLNADITDVIAAVGQHYGVQAVEGVLSNRSKRW VPDGIDCIIARRVTSEDPHQDVADCEVGEHQVWCLDVAFTNNHNYRITLSEKPVTLFRRT PADFNADARVTQANETLQEITDTHFCFPFHFKSLANPLKGKLGIHVLEKKGMVDKLPPLR TKHGYVTARFSATVAVTAKRVTVLCGAPPTAPVATPPAMRPTVSEDTLAAEVLALLRRPY EFADVRAAVTAKGARDQSSPSAKRMRVEALENEE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_130570.1.fa Sequence name : LdBPK_130570 Sequence length : 574 VALUES OF COMPUTED PARAMETERS Coef20 : 4.305 CoefTot : 0.257 ChDiff : 13 ZoneTo : 34 KR : 10 DE : 0 CleavSite : 25 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.306 1.376 0.179 0.467 MesoH : -0.503 0.375 -0.317 0.173 MuHd_075 : 33.252 12.896 6.358 6.475 MuHd_095 : 35.748 11.424 7.575 6.993 MuHd_100 : 29.550 11.506 7.256 5.430 MuHd_105 : 36.388 15.065 9.356 6.500 Hmax_075 : 2.100 6.600 -1.817 0.814 Hmax_095 : 5.900 -2.100 -0.862 1.090 Hmax_100 : 5.900 2.600 -2.020 1.090 Hmax_105 : 10.967 2.800 -0.175 1.937 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0329 0.9671 DFMC : 0.0108 0.9892 This protein is probably imported in mitochondria. f(Ser) = 0.2059 f(Arg) = 0.1765 CMi = 0.64935 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 574 LdBPK_130570.1 MGRGYSASRSKSGRPTLRMKRSRSMSLHALKKNMDAHEAAKAANGGSAEASSLSSAATTEVPRKTLKVVRQRRAPSSLLS 80 SSSPATASSTPAAAKVAMKGAATKVKSADGRGRTATSSPGPRSQSAAFRRNLEDLERQFDAAMEASEDEDETVMNTTTMT 160 KYKECGRVVDAVLDQLAAACVPGANTKVLCDTGDEEIASRLKGLFVKTKGADGKRLARGISYPTNVSVNEMLCNDSPYRV 240 EDGAILKDGDVVKLHVGCHLDGYPVSAARTVVVTTRAASAVTEGDEEEAQRRRSSTAATLSSRSAVGNTIEAARVALLAM 320 MHALRPGTLNADITDVIAAVGQHYGVQAVEGVLSNRSKRWVPDGIDCIIARRVTSEDPHQDVADCEVGEHQVWCLDVAFT 400 NNHNYRITLSEKPVTLFRRTPADFNADARVTQANETLQEITDTHFCFPFHFKSLANPLKGKLGIHVLEKKGMVDKLPPLR 480 TKHGYVTARFSATVAVTAKRVTVLCGAPPTAPVATPPAMRPTVSEDTLAAEVLALLRRPYEFADVRAAVTAKGARDQSSP 560 SAKRMRVEALENEE 640 ....................P........................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................P......................................... 400 ................................................................................ 480 ................................................................................ 560 .............. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LdBPK_130570.1 3 ----MGR|GY 0.125 . LdBPK_130570.1 9 RGYSASR|SK 0.113 . LdBPK_130570.1 11 YSASRSK|SG 0.091 . LdBPK_130570.1 14 SRSKSGR|PT 0.153 . LdBPK_130570.1 18 SGRPTLR|MK 0.085 . LdBPK_130570.1 20 RPTLRMK|RS 0.060 . LdBPK_130570.1 21 PTLRMKR|SR 0.666 *ProP* LdBPK_130570.1 23 LRMKRSR|SM 0.164 . LdBPK_130570.1 31 MSLHALK|KN 0.065 . LdBPK_130570.1 32 SLHALKK|NM 0.157 . LdBPK_130570.1 41 DAHEAAK|AA 0.080 . LdBPK_130570.1 63 ATTEVPR|KT 0.086 . LdBPK_130570.1 64 TTEVPRK|TL 0.087 . LdBPK_130570.1 67 VPRKTLK|VV 0.078 . LdBPK_130570.1 70 KTLKVVR|QR 0.074 . LdBPK_130570.1 72 LKVVRQR|RA 0.099 . LdBPK_130570.1 73 KVVRQRR|AP 0.435 . LdBPK_130570.1 95 STPAAAK|VA 0.081 . LdBPK_130570.1 99 AAKVAMK|GA 0.086 . LdBPK_130570.1 104 MKGAATK|VK 0.072 . LdBPK_130570.1 106 GAATKVK|SA 0.155 . LdBPK_130570.1 111 VKSADGR|GR 0.101 . LdBPK_130570.1 113 SADGRGR|TA 0.106 . LdBPK_130570.1 122 TSSPGPR|SQ 0.238 . LdBPK_130570.1 129 SQSAAFR|RN 0.097 . LdBPK_130570.1 130 QSAAFRR|NL 0.335 . LdBPK_130570.1 137 NLEDLER|QF 0.095 . LdBPK_130570.1 161 NTTTMTK|YK 0.063 . LdBPK_130570.1 163 TTMTKYK|EC 0.100 . LdBPK_130570.1 167 KYKECGR|VV 0.144 . LdBPK_130570.1 187 VPGANTK|VL 0.069 . LdBPK_130570.1 200 DEEIASR|LK 0.080 . LdBPK_130570.1 202 EIASRLK|GL 0.067 . LdBPK_130570.1 207 LKGLFVK|TK 0.074 . LdBPK_130570.1 209 GLFVKTK|GA 0.100 . LdBPK_130570.1 214 TKGADGK|RL 0.075 . LdBPK_130570.1 215 KGADGKR|LA 0.161 . LdBPK_130570.1 218 DGKRLAR|GI 0.261 . LdBPK_130570.1 239 CNDSPYR|VE 0.073 . LdBPK_130570.1 247 EDGAILK|DG 0.066 . LdBPK_130570.1 253 KDGDVVK|LH 0.059 . LdBPK_130570.1 269 YPVSAAR|TV 0.102 . LdBPK_130570.1 276 TVVVTTR|AA 0.153 . LdBPK_130570.1 291 DEEEAQR|RR 0.074 . LdBPK_130570.1 292 EEEAQRR|RS 0.134 . LdBPK_130570.1 293 EEAQRRR|SS 0.295 . LdBPK_130570.1 303 AATLSSR|SA 0.115 . LdBPK_130570.1 314 NTIEAAR|VA 0.091 . LdBPK_130570.1 325 AMMHALR|PG 0.070 . LdBPK_130570.1 356 EGVLSNR|SK 0.126 . LdBPK_130570.1 358 VLSNRSK|RW 0.069 . LdBPK_130570.1 359 LSNRSKR|WV 0.870 *ProP* LdBPK_130570.1 371 IDCIIAR|RV 0.122 . LdBPK_130570.1 372 DCIIARR|VT 0.111 . LdBPK_130570.1 406 TNNHNYR|IT 0.119 . LdBPK_130570.1 412 RITLSEK|PV 0.071 . LdBPK_130570.1 418 KPVTLFR|RT 0.081 . LdBPK_130570.1 419 PVTLFRR|TP 0.102 . LdBPK_130570.1 429 DFNADAR|VT 0.103 . LdBPK_130570.1 452 CFPFHFK|SL 0.085 . LdBPK_130570.1 459 SLANPLK|GK 0.069 . LdBPK_130570.1 461 ANPLKGK|LG 0.065 . LdBPK_130570.1 469 GIHVLEK|KG 0.057 . LdBPK_130570.1 470 IHVLEKK|GM 0.100 . LdBPK_130570.1 475 KKGMVDK|LP 0.057 . LdBPK_130570.1 480 DKLPPLR|TK 0.076 . LdBPK_130570.1 482 LPPLRTK|HG 0.060 . LdBPK_130570.1 489 HGYVTAR|FS 0.135 . LdBPK_130570.1 499 TVAVTAK|RV 0.084 . LdBPK_130570.1 500 VAVTAKR|VT 0.109 . LdBPK_130570.1 520 ATPPAMR|PT 0.077 . LdBPK_130570.1 537 EVLALLR|RP 0.059 . LdBPK_130570.1 538 VLALLRR|PY 0.112 . LdBPK_130570.1 546 YEFADVR|AA 0.086 . LdBPK_130570.1 552 RAAVTAK|GA 0.112 . LdBPK_130570.1 555 VTAKGAR|DQ 0.088 . LdBPK_130570.1 563 QSSPSAK|RM 0.075 . LdBPK_130570.1 564 SSPSAKR|MR 0.157 . LdBPK_130570.1 566 PSAKRMR|VE 0.081 . ____________________________^_________________

  • Fasta :-

    >LdBPK_130570.1 ATGGGCCGCGGGTACAGTGCCAGCCGTAGCAAGAGCGGCCGTCCGACGCTGCGGATGAAG CGCTCCCGTTCCATGTCGCTGCACGCGCTGAAGAAGAACATGGACGCGCACGAGGCGGCC AAGGCGGCCAACGGCGGCAGCGCCGAGGCGTCGTCGTTGTCCTCTGCCGCGACGACCGAG GTGCCGCGCAAGACGCTCAAGGTGGTGCGCCAGCGTCGCGCGCCGTCTTCGTTGCTTTCA TCGTCGTCGCCAGCAACAGCGAGCTCTACCCCCGCCGCTGCGAAGGTGGCTATGAAAGGG GCGGCAACGAAGGTCAAGTCCGCCGACGGCCGCGGTCGCACCGCAACATCTAGCCCCGGC CCTCGTTCGCAGTCCGCCGCCTTTCGCCGCAATCTGGAAGACCTCGAAAGGCAGTTCGAC GCCGCCATGGAGGCCAGCGAGGACGAAGATGAGACCGTCATGAACACCACGACCATGACC AAGTACAAGGAGTGCGGCCGCGTTGTCGACGCTGTGCTGGATCAGCTCGCGGCGGCGTGC GTACCCGGCGCGAACACAAAGGTACTGTGCGACACAGGTGACGAGGAAATCGCGAGTCGG CTGAAGGGACTGTTCGTGAAGACCAAGGGTGCGGATGGAAAGCGGCTGGCGCGCGGCATC TCGTACCCGACGAACGTGTCCGTGAACGAAATGCTGTGCAACGACAGCCCGTACCGCGTG GAGGACGGCGCCATCTTGAAGGACGGCGACGTCGTGAAGCTGCACGTGGGCTGCCACCTC GACGGCTACCCAGTGAGCGCCGCACGCACGGTCGTCGTCACCACGAGAGCGGCTTCCGCG GTTACGGAGGGCGACGAGGAGGAGGCGCAGAGAAGGAGGAGCAGCACAGCGGCGACGTTG TCGTCGCGCTCAGCCGTTGGCAACACCATTGAGGCGGCTCGCGTGGCGCTGCTGGCGATG ATGCACGCGCTGCGCCCTGGCACACTCAACGCCGACATCACGGACGTCATCGCTGCCGTC GGGCAACACTACGGCGTGCAGGCTGTGGAGGGCGTGCTGTCGAACCGGAGCAAGCGCTGG GTGCCGGATGGGATCGACTGTATCATTGCCCGCCGCGTGACGAGCGAGGACCCGCATCAG GACGTGGCCGACTGCGAGGTGGGCGAGCATCAGGTGTGGTGCCTCGACGTCGCCTTCACT AACAACCACAACTACCGCATCACGCTCTCTGAGAAGCCCGTGACACTGTTTCGTCGCACC CCTGCCGACTTCAACGCGGACGCGCGGGTGACGCAGGCGAACGAGACGCTGCAGGAGATC ACTGACACACATTTCTGCTTTCCTTTCCACTTCAAGAGCCTCGCGAACCCGCTAAAGGGG AAGCTTGGCATCCACGTGTTGGAGAAGAAGGGCATGGTGGACAAGCTGCCCCCGCTGCGC ACGAAGCACGGCTACGTGACGGCGCGGTTTAGTGCAACTGTGGCGGTGACGGCGAAGCGG GTGACGGTGCTGTGCGGCGCGCCGCCCACCGCCCCTGTGGCGACGCCGCCAGCAATGCGG CCAACCGTGTCGGAGGACACATTGGCGGCCGAGGTGCTTGCGTTGCTGAGACGCCCGTAC GAGTTCGCCGATGTGCGCGCGGCAGTGACGGCGAAAGGCGCGAGGGACCAGAGCAGCCCC TCCGCGAAACGCATGCGCGTAGAGGCGCTGGAGAACGAAGAGTAG
  • Download Fasta

  • Fasta :-

    MGRGYSASRSKSGRPTLRMKRSRSMSLHALKKNMDAHEAAKAANGGSAEASSLSSAATTE VPRKTLKVVRQRRAPSSLLSSSSPATASSTPAAAKVAMKGAATKVKSADGRGRTATSSPG PRSQSAAFRRNLEDLERQFDAAMEASEDEDETVMNTTTMTKYKECGRVVDAVLDQLAAAC VPGANTKVLCDTGDEEIASRLKGLFVKTKGADGKRLARGISYPTNVSVNEMLCNDSPYRV EDGAILKDGDVVKLHVGCHLDGYPVSAARTVVVTTRAASAVTEGDEEEAQRRRSSTAATL SSRSAVGNTIEAARVALLAMMHALRPGTLNADITDVIAAVGQHYGVQAVEGVLSNRSKRW VPDGIDCIIARRVTSEDPHQDVADCEVGEHQVWCLDVAFTNNHNYRITLSEKPVTLFRRT PADFNADARVTQANETLQEITDTHFCFPFHFKSLANPLKGKLGIHVLEKKGMVDKLPPLR TKHGYVTARFSATVAVTAKRVTVLCGAPPTAPVATPPAMRPTVSEDTLAAEVLALLRRPY EFADVRAAVTAKGARDQSSPSAKRMRVEALENEE

  • title: active site
  • coordinates: N234,H255,S266,N401,D474,S491
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_130570.126 SSRSMSLHAL0.995unspLdBPK_130570.126 SSRSMSLHAL0.995unspLdBPK_130570.126 SSRSMSLHAL0.995unspLdBPK_130570.165 TVPRKTLKVV0.99unspLdBPK_130570.1294 SQRRRSSTAA0.997unspLdBPK_130570.1295 SRRRSSTAAT0.995unspLdBPK_130570.1561 SQSSPSAKRM0.997unspLdBPK_130570.112 SSRSKSGRPT0.997unspLdBPK_130570.124 SKRSRSMSLH0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India