LdBPK_130760.1 | mitochondrial processing peptidase alpha subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005739      

  • Curated_GO_Components:  mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_130760.1OTHER0.6808820.0190400.300078
No Results

  • Fasta :-

    >LdBPK_130760.1 MFRRVVAPAPVAATAACAGQARSIYEYKFGQTPLTQPFGGTSRLPPGPSSKPAPVAAGKV EITKLHNGARVITHNLGGPSVSVGAYILAGPAYDPPSAPGTGAMMHLALTTSNYNNSLFQ LDRNIRSVGAAQSHFEKHKHYIGIRIDARADKWKSAAPTSSLSQRRQLQNQKQAEQQFSL NLVQDNIFTCIAAPRFHEPDVERFRDTIDNQVEELRWQCPAEYAKQMLETVAFYREPLGN PRFVPAMSNGIISSSVLLEQYSRYVVPSRVVVSGVNVDHAALIAEYENTPFPHSASAPHH ARAQPCAVNWKDEAAQYTGGERHDHEDRPKVMGTKPDMDPESIIAVGWLAYGKDRKMTKD HAASMVVGALMDIGFSGRMRCGAPDEMHEHTGLRAFYSPYQTAGLIGFTAKAEPQAAVRM VTDAVRMVQANKASVADSMLSVAKKMARTQFMVQNVDTIRDYCDYLGTCLAVDSDSTLAT SVEEVVDAINSVNAVDVKRVYETMFSNKTSLYGHGEMLGFPSMRQMGL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_130760.1.fa Sequence name : LdBPK_130760 Sequence length : 528 VALUES OF COMPUTED PARAMETERS Coef20 : 4.548 CoefTot : -5.661 ChDiff : 2 ZoneTo : 135 KR : 11 DE : 4 CleavSite : 128 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.341 1.276 0.210 0.572 MesoH : -0.007 0.247 -0.280 0.244 MuHd_075 : 35.487 25.542 9.639 9.082 MuHd_095 : 29.131 20.465 8.936 6.838 MuHd_100 : 31.034 23.643 8.992 8.722 MuHd_105 : 36.693 26.230 9.863 9.484 Hmax_075 : 14.600 11.800 2.382 6.120 Hmax_095 : 12.000 17.300 2.768 3.754 Hmax_100 : 12.400 16.400 3.164 5.260 Hmax_105 : 6.650 13.417 0.658 4.877 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5877 0.4123 DFMC : 0.4808 0.5192 This protein is probably imported in mitochondria. f(Ser) = 0.0815 f(Arg) = 0.0519 CMi = 0.57143 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 528 LdBPK_130760.1 MFRRVVAPAPVAATAACAGQARSIYEYKFGQTPLTQPFGGTSRLPPGPSSKPAPVAAGKVEITKLHNGARVITHNLGGPS 80 VSVGAYILAGPAYDPPSAPGTGAMMHLALTTSNYNNSLFQLDRNIRSVGAAQSHFEKHKHYIGIRIDARADKWKSAAPTS 160 SLSQRRQLQNQKQAEQQFSLNLVQDNIFTCIAAPRFHEPDVERFRDTIDNQVEELRWQCPAEYAKQMLETVAFYREPLGN 240 PRFVPAMSNGIISSSVLLEQYSRYVVPSRVVVSGVNVDHAALIAEYENTPFPHSASAPHHARAQPCAVNWKDEAAQYTGG 320 ERHDHEDRPKVMGTKPDMDPESIIAVGWLAYGKDRKMTKDHAASMVVGALMDIGFSGRMRCGAPDEMHEHTGLRAFYSPY 400 QTAGLIGFTAKAEPQAAVRMVTDAVRMVQANKASVADSMLSVAKKMARTQFMVQNVDTIRDYCDYLGTCLAVDSDSTLAT 480 SVEEVVDAINSVNAVDVKRVYETMFSNKTSLYGHGEMLGFPSMRQMGL 560 ................................................................................ 80 .............................................P.................................. 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_130760.1 3 ----MFR|RV 0.096 . LdBPK_130760.1 4 ---MFRR|VV 0.232 . LdBPK_130760.1 22 ACAGQAR|SI 0.188 . LdBPK_130760.1 28 RSIYEYK|FG 0.078 . LdBPK_130760.1 43 PFGGTSR|LP 0.058 . LdBPK_130760.1 51 PPGPSSK|PA 0.072 . LdBPK_130760.1 59 APVAAGK|VE 0.067 . LdBPK_130760.1 64 GKVEITK|LH 0.062 . LdBPK_130760.1 70 KLHNGAR|VI 0.129 . LdBPK_130760.1 123 SLFQLDR|NI 0.102 . LdBPK_130760.1 126 QLDRNIR|SV 0.700 *ProP* LdBPK_130760.1 137 AQSHFEK|HK 0.082 . LdBPK_130760.1 139 SHFEKHK|HY 0.080 . LdBPK_130760.1 145 KHYIGIR|ID 0.082 . LdBPK_130760.1 149 GIRIDAR|AD 0.088 . LdBPK_130760.1 152 IDARADK|WK 0.200 . LdBPK_130760.1 154 ARADKWK|SA 0.128 . LdBPK_130760.1 165 TSSLSQR|RQ 0.135 . LdBPK_130760.1 166 SSLSQRR|QL 0.167 . LdBPK_130760.1 172 RQLQNQK|QA 0.074 . LdBPK_130760.1 195 TCIAAPR|FH 0.110 . LdBPK_130760.1 203 HEPDVER|FR 0.114 . LdBPK_130760.1 205 PDVERFR|DT 0.125 . LdBPK_130760.1 216 NQVEELR|WQ 0.093 . LdBPK_130760.1 225 CPAEYAK|QM 0.061 . LdBPK_130760.1 235 ETVAFYR|EP 0.072 . LdBPK_130760.1 242 EPLGNPR|FV 0.114 . LdBPK_130760.1 263 LLEQYSR|YV 0.114 . LdBPK_130760.1 269 RYVVPSR|VV 0.101 . LdBPK_130760.1 302 SAPHHAR|AQ 0.108 . LdBPK_130760.1 311 PCAVNWK|DE 0.078 . LdBPK_130760.1 322 QYTGGER|HD 0.071 . LdBPK_130760.1 328 RHDHEDR|PK 0.078 . LdBPK_130760.1 330 DHEDRPK|VM 0.073 . LdBPK_130760.1 335 PKVMGTK|PD 0.064 . LdBPK_130760.1 353 GWLAYGK|DR 0.061 . LdBPK_130760.1 355 LAYGKDR|KM 0.089 . LdBPK_130760.1 356 AYGKDRK|MT 0.093 . LdBPK_130760.1 359 KDRKMTK|DH 0.081 . LdBPK_130760.1 378 DIGFSGR|MR 0.097 . LdBPK_130760.1 380 GFSGRMR|CG 0.124 . LdBPK_130760.1 394 HEHTGLR|AF 0.082 . LdBPK_130760.1 411 LIGFTAK|AE 0.070 . LdBPK_130760.1 419 EPQAAVR|MV 0.170 . LdBPK_130760.1 426 MVTDAVR|MV 0.103 . LdBPK_130760.1 432 RMVQANK|AS 0.059 . LdBPK_130760.1 444 SMLSVAK|KM 0.067 . LdBPK_130760.1 445 MLSVAKK|MA 0.270 . LdBPK_130760.1 448 VAKKMAR|TQ 0.099 . LdBPK_130760.1 460 QNVDTIR|DY 0.136 . LdBPK_130760.1 498 VNAVDVK|RV 0.077 . LdBPK_130760.1 499 NAVDVKR|VY 0.183 . LdBPK_130760.1 508 ETMFSNK|TS 0.062 . LdBPK_130760.1 524 LGFPSMR|QM 0.108 . ____________________________^_________________

  • Fasta :-

    >LdBPK_130760.1 ATGTTCCGCCGTGTAGTCGCTCCGGCGCCGGTGGCGGCCACCGCAGCCTGCGCTGGGCAG GCTCGCAGCATCTACGAGTACAAGTTCGGTCAGACCCCCCTCACCCAACCGTTTGGCGGA ACCTCTCGCCTGCCGCCTGGCCCCTCGTCGAAGCCTGCCCCGGTTGCTGCCGGGAAGGTG GAGATCACGAAGCTGCACAACGGCGCGCGCGTCATCACGCACAACCTCGGTGGACCGTCG GTGTCCGTTGGTGCCTACATACTCGCCGGCCCCGCCTACGACCCACCGAGCGCGCCGGGC ACGGGAGCCATGATGCACCTTGCCCTGACGACGAGCAACTACAATAATTCGCTGTTCCAG CTTGACCGCAACATTCGCAGTGTCGGCGCCGCCCAGTCGCACTTCGAGAAGCACAAGCAC TACATCGGCATTCGCATCGACGCCCGCGCCGACAAGTGGAAGAGCGCCGCGCCGACGTCA TCGCTTTCACAGCGGCGGCAGCTGCAGAACCAGAAGCAAGCGGAGCAGCAGTTCTCGTTG AATCTGGTGCAGGACAACATCTTTACCTGCATCGCCGCGCCCCGCTTCCACGAGCCGGAT GTGGAGCGCTTCCGTGACACCATTGACAACCAGGTCGAGGAGCTCCGCTGGCAATGCCCA GCCGAGTACGCGAAGCAGATGCTGGAGACGGTCGCCTTCTACCGTGAGCCGCTCGGCAAC CCTCGCTTCGTGCCGGCGATGAGCAACGGCATCATTTCGAGCAGCGTACTGCTGGAGCAG TACAGCCGCTACGTCGTGCCGTCGCGCGTCGTCGTCTCCGGCGTCAACGTCGATCACGCC GCGCTGATTGCCGAGTACGAGAACACCCCGTTCCCACACTCCGCCTCCGCACCGCACCAC GCCCGCGCGCAGCCGTGCGCGGTGAACTGGAAGGATGAGGCCGCTCAGTACACCGGGGGC GAGCGCCACGACCACGAGGACCGCCCCAAGGTAATGGGAACGAAGCCGGACATGGACCCG GAGTCCATCATCGCCGTCGGCTGGCTCGCGTACGGCAAAGACAGGAAGATGACGAAGGAC CACGCCGCCTCGATGGTCGTGGGGGCGCTGATGGACATCGGGTTCAGCGGCCGCATGCGC TGCGGCGCCCCGGATGAAATGCACGAGCACACGGGCCTGCGCGCCTTCTACAGCCCCTAC CAAACGGCTGGCCTGATCGGCTTCACGGCGAAGGCAGAGCCGCAGGCAGCGGTGCGCATG GTGACGGACGCTGTGAGGATGGTGCAAGCAAACAAGGCCTCTGTCGCGGACTCGATGCTG TCCGTGGCGAAAAAAATGGCGAGAACGCAGTTCATGGTGCAGAATGTCGACACCATTCGC GACTACTGCGACTACCTTGGCACCTGCCTCGCCGTGGATAGCGATTCGACCCTAGCCACA TCGGTCGAAGAGGTTGTCGACGCCATCAACTCTGTCAACGCGGTGGATGTGAAGCGGGTG TACGAGACGATGTTCTCGAACAAGACCAGCCTGTACGGCCACGGCGAGATGCTCGGCTTC CCTTCCATGCGCCAGATGGGTCTGTAG
  • Download Fasta

  • Fasta :-

    MFRRVVAPAPVAATAACAGQARSIYEYKFGQTPLTQPFGGTSRLPPGPSSKPAPVAAGKV EITKLHNGARVITHNLGGPSVSVGAYILAGPAYDPPSAPGTGAMMHLALTTSNYNNSLFQ LDRNIRSVGAAQSHFEKHKHYIGIRIDARADKWKSAAPTSSLSQRRQLQNQKQAEQQFSL NLVQDNIFTCIAAPRFHEPDVERFRDTIDNQVEELRWQCPAEYAKQMLETVAFYREPLGN PRFVPAMSNGIISSSVLLEQYSRYVVPSRVVVSGVNVDHAALIAEYENTPFPHSASAPHH ARAQPCAVNWKDEAAQYTGGERHDHEDRPKVMGTKPDMDPESIIAVGWLAYGKDRKMTKD HAASMVVGALMDIGFSGRMRCGAPDEMHEHTGLRAFYSPYQTAGLIGFTAKAEPQAAVRM VTDAVRMVQANKASVADSMLSVAKKMARTQFMVQNVDTIRDYCDYLGTCLAVDSDSTLAT SVEEVVDAINSVNAVDVKRVYETMFSNKTSLYGHGEMLGFPSMRQMGL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_130760.1163 STSSLSQRRQ0.995unspLdBPK_130760.1481 STLATSVEEV0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India