LdBPK_130990.1 | proteasome regulatory ATPase subunit 2, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_130990.1OTHER0.9999910.0000030.000006
No Results

  • Fasta :-

    >LdBPK_130990.1 MGQNMPKPPGAGKPEKWEPPVAPEIGKRKKKRGPDAATRIPKVYPNRACLLRKYRLERCK DYLLLEEEFLRTINAQRDAQSNLEEGAMGHYEAELKRVEDIRGTPLEVATLEEAVDDSHA IVSISGTEYYVPLMSFVDKEQLELGCSVLLHDRQHSIVGVLKDDVDPLVSVMKVDKAPED TYADIGGLEQQIQEIKEAVEFPLSHPELYDEIGIKPPKGVILYGVPGTGKTLLAKAVANR TSATFLRVVGSELIQKYSGEGPKLVRELFRVAEEHSPAIVFIDEIDAIGTKRYDTDSSGT KEVQRTMLELLTQLDGFDSSNDVKVIMATNRIDTLDPALIRPGRIDRKIEFPFPDEKTKR RIFEIHTSRMSLAEDVDISEFIHAKDEMSGADVKAICTEAGLLALRERRMKVCQADFIKG KENVQYRKDKSTFSRFYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_130990.1.fa Sequence name : LdBPK_130990 Sequence length : 438 VALUES OF COMPUTED PARAMETERS Coef20 : 1.865 CoefTot : -2.136 ChDiff : -9 ZoneTo : 14 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.065 1.112 0.079 0.519 MesoH : -0.938 0.256 -0.447 0.175 MuHd_075 : 17.942 13.180 6.068 3.292 MuHd_095 : 20.162 7.698 3.761 3.113 MuHd_100 : 14.744 7.864 3.760 1.959 MuHd_105 : 9.186 7.998 3.746 2.545 Hmax_075 : 1.167 0.117 -2.560 2.053 Hmax_095 : 1.312 -4.375 -3.658 1.566 Hmax_100 : -0.400 -3.400 -3.306 0.980 Hmax_105 : 0.200 -3.700 -2.752 1.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9835 0.0165 DFMC : 0.9743 0.0257
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 438 LdBPK_130990.1 MGQNMPKPPGAGKPEKWEPPVAPEIGKRKKKRGPDAATRIPKVYPNRACLLRKYRLERCKDYLLLEEEFLRTINAQRDAQ 80 SNLEEGAMGHYEAELKRVEDIRGTPLEVATLEEAVDDSHAIVSISGTEYYVPLMSFVDKEQLELGCSVLLHDRQHSIVGV 160 LKDDVDPLVSVMKVDKAPEDTYADIGGLEQQIQEIKEAVEFPLSHPELYDEIGIKPPKGVILYGVPGTGKTLLAKAVANR 240 TSATFLRVVGSELIQKYSGEGPKLVRELFRVAEEHSPAIVFIDEIDAIGTKRYDTDSSGTKEVQRTMLELLTQLDGFDSS 320 NDVKVIMATNRIDTLDPALIRPGRIDRKIEFPFPDEKTKRRIFEIHTSRMSLAEDVDISEFIHAKDEMSGADVKAICTEA 400 GLLALRERRMKVCQADFIKGKENVQYRKDKSTFSRFYL 480 ...............................P................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_130990.1 7 MGQNMPK|PP 0.080 . LdBPK_130990.1 13 KPPGAGK|PE 0.062 . LdBPK_130990.1 16 GAGKPEK|WE 0.073 . LdBPK_130990.1 27 VAPEIGK|RK 0.058 . LdBPK_130990.1 28 APEIGKR|KK 0.173 . LdBPK_130990.1 29 PEIGKRK|KK 0.076 . LdBPK_130990.1 30 EIGKRKK|KR 0.110 . LdBPK_130990.1 31 IGKRKKK|RG 0.277 . LdBPK_130990.1 32 GKRKKKR|GP 0.509 *ProP* LdBPK_130990.1 39 GPDAATR|IP 0.074 . LdBPK_130990.1 42 AATRIPK|VY 0.086 . LdBPK_130990.1 47 PKVYPNR|AC 0.068 . LdBPK_130990.1 52 NRACLLR|KY 0.085 . LdBPK_130990.1 53 RACLLRK|YR 0.073 . LdBPK_130990.1 55 CLLRKYR|LE 0.151 . LdBPK_130990.1 58 RKYRLER|CK 0.265 . LdBPK_130990.1 60 YRLERCK|DY 0.069 . LdBPK_130990.1 71 LEEEFLR|TI 0.095 . LdBPK_130990.1 77 RTINAQR|DA 0.118 . LdBPK_130990.1 96 HYEAELK|RV 0.091 . LdBPK_130990.1 97 YEAELKR|VE 0.133 . LdBPK_130990.1 102 KRVEDIR|GT 0.111 . LdBPK_130990.1 139 LMSFVDK|EQ 0.071 . LdBPK_130990.1 153 SVLLHDR|QH 0.085 . LdBPK_130990.1 162 SIVGVLK|DD 0.069 . LdBPK_130990.1 173 PLVSVMK|VD 0.065 . LdBPK_130990.1 176 SVMKVDK|AP 0.068 . LdBPK_130990.1 196 QQIQEIK|EA 0.060 . LdBPK_130990.1 215 YDEIGIK|PP 0.060 . LdBPK_130990.1 218 IGIKPPK|GV 0.081 . LdBPK_130990.1 230 GVPGTGK|TL 0.056 . LdBPK_130990.1 235 GKTLLAK|AV 0.072 . LdBPK_130990.1 240 AKAVANR|TS 0.097 . LdBPK_130990.1 247 TSATFLR|VV 0.211 . LdBPK_130990.1 256 GSELIQK|YS 0.079 . LdBPK_130990.1 263 YSGEGPK|LV 0.072 . LdBPK_130990.1 266 EGPKLVR|EL 0.079 . LdBPK_130990.1 270 LVRELFR|VA 0.118 . LdBPK_130990.1 291 IDAIGTK|RY 0.059 . LdBPK_130990.1 292 DAIGTKR|YD 0.195 . LdBPK_130990.1 301 TDSSGTK|EV 0.078 . LdBPK_130990.1 305 GTKEVQR|TM 0.086 . LdBPK_130990.1 324 DSSNDVK|VI 0.068 . LdBPK_130990.1 331 VIMATNR|ID 0.074 . LdBPK_130990.1 341 LDPALIR|PG 0.073 . LdBPK_130990.1 344 ALIRPGR|ID 0.308 . LdBPK_130990.1 347 RPGRIDR|KI 0.307 . LdBPK_130990.1 348 PGRIDRK|IE 0.076 . LdBPK_130990.1 357 FPFPDEK|TK 0.060 . LdBPK_130990.1 359 FPDEKTK|RR 0.066 . LdBPK_130990.1 360 PDEKTKR|RI 0.229 . LdBPK_130990.1 361 DEKTKRR|IF 0.164 . LdBPK_130990.1 369 FEIHTSR|MS 0.082 . LdBPK_130990.1 385 SEFIHAK|DE 0.079 . LdBPK_130990.1 394 MSGADVK|AI 0.072 . LdBPK_130990.1 406 AGLLALR|ER 0.065 . LdBPK_130990.1 408 LLALRER|RM 0.084 . LdBPK_130990.1 409 LALRERR|MK 0.349 . LdBPK_130990.1 411 LRERRMK|VC 0.112 . LdBPK_130990.1 419 CQADFIK|GK 0.076 . LdBPK_130990.1 421 ADFIKGK|EN 0.070 . LdBPK_130990.1 427 KENVQYR|KD 0.094 . LdBPK_130990.1 428 ENVQYRK|DK 0.094 . LdBPK_130990.1 430 VQYRKDK|ST 0.217 . LdBPK_130990.1 435 DKSTFSR|FY 0.127 . ____________________________^_________________

  • Fasta :-

    >LdBPK_130990.1 ATGGGGCAGAACATGCCAAAGCCGCCTGGCGCCGGCAAACCAGAGAAGTGGGAACCTCCT GTGGCGCCGGAGATCGGCAAGCGCAAGAAGAAGCGTGGCCCCGACGCGGCCACGCGTATT CCGAAGGTCTACCCGAACCGCGCCTGCCTCCTCCGAAAGTACCGCCTTGAGCGCTGCAAG GACTACCTCCTCCTAGAGGAGGAGTTCCTGCGCACGATCAACGCCCAGCGCGACGCGCAG TCGAACCTGGAGGAGGGTGCGATGGGCCACTACGAGGCGGAGCTGAAGCGCGTCGAGGAC ATCCGTGGCACCCCACTGGAGGTGGCGACGCTCGAGGAGGCAGTGGACGACTCGCACGCG ATCGTCTCCATCTCTGGTACCGAGTACTACGTGCCCCTCATGTCGTTCGTAGATAAGGAG CAGTTAGAGCTGGGATGCAGCGTGCTGCTGCATGACCGGCAGCACAGCATCGTTGGCGTG CTCAAGGACGACGTCGACCCGCTGGTGAGTGTCATGAAGGTGGACAAGGCGCCGGAGGAC ACGTACGCGGACATTGGTGGCCTGGAGCAGCAGATCCAGGAGATCAAGGAGGCGGTCGAG TTTCCACTCTCCCACCCAGAGCTGTACGACGAGATAGGCATCAAGCCACCTAAGGGTGTC ATTCTCTACGGTGTCCCCGGCACCGGCAAGACGCTGCTGGCCAAAGCCGTCGCGAACCGC ACGAGCGCCACGTTCCTGCGGGTGGTGGGGTCGGAGCTGATTCAGAAGTACTCCGGCGAG GGCCCCAAGCTCGTGCGTGAGCTCTTCCGGGTTGCGGAAGAGCACTCGCCAGCGATCGTT TTCATTGACGAAATCGACGCCATCGGCACGAAGCGCTACGACACGGACAGCAGCGGCACC AAAGAGGTGCAGCGTACGATGCTGGAGCTGCTCACGCAATTGGACGGCTTCGATAGCAGC AACGACGTGAAGGTGATCATGGCAACGAACCGCATCGACACCCTCGACCCGGCCCTCATC CGCCCTGGCCGTATCGATCGCAAGATTGAGTTCCCCTTCCCAGACGAGAAGACGAAGCGC CGCATCTTCGAAATCCATACAAGCCGCATGTCACTCGCCGAAGACGTCGACATCTCCGAG TTTATCCACGCGAAGGATGAGATGAGCGGCGCGGATGTGAAGGCAATCTGCACAGAGGCC GGGCTGCTGGCCCTGCGTGAGCGCCGCATGAAGGTGTGCCAAGCCGACTTTATCAAGGGC AAGGAAAATGTGCAGTACCGCAAGGACAAGTCGACGTTTTCGCGCTTTTACTTGTAA
  • Download Fasta

  • Fasta :-

    MGQNMPKPPGAGKPEKWEPPVAPEIGKRKKKRGPDAATRIPKVYPNRACLLRKYRLERCK DYLLLEEEFLRTINAQRDAQSNLEEGAMGHYEAELKRVEDIRGTPLEVATLEEAVDDSHA IVSISGTEYYVPLMSFVDKEQLELGCSVLLHDRQHSIVGVLKDDVDPLVSVMKVDKAPED TYADIGGLEQQIQEIKEAVEFPLSHPELYDEIGIKPPKGVILYGVPGTGKTLLAKAVANR TSATFLRVVGSELIQKYSGEGPKLVRELFRVAEEHSPAIVFIDEIDAIGTKRYDTDSSGT KEVQRTMLELLTQLDGFDSSNDVKVIMATNRIDTLDPALIRPGRIDRKIEFPFPDEKTKR RIFEIHTSRMSLAEDVDISEFIHAKDEMSGADVKAICTEAGLLALRERRMKVCQADFIKG KENVQYRKDKSTFSRFYL

  • title: ATP binding site
  • coordinates: V225,P226,G227,T228,G229,K230,T231,L232,D283,N330
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_130990.1182 YPEDTYADIG0.993unspLdBPK_130990.1371 STSRMSLAED0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India