LdBPK_171390.1 | eukaryotic translation initiation factor 3 subunit b

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      GO:0005852      

  • Curated_GO_Components:  cytoplasm      eukaryotic translation initiation factor 3 complex      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_171390.1OTHER0.9999640.0000280.000009
No Results

  • Fasta :-

    >LdBPK_171390.1 MTDVNFGRHIIIDGLPNNVTPDKRDLFQRHFSRRIGELLGGEKFSLHLLTDPETALLSGA ILSCVTEAQAEAALAKLNRFPFTKSAVLTTYRWSSLEEARKDDGPYVPPPMANDDDEEEA ELVHNMAEDPDARPQFLIKSGVSFDCDWYWFNWEKNEPDLYRRRKISKDDPLCRWSEVDR DNKKLSSGMVCSALPVSRPLPVWSTYGSMVISQHEKGLRVWAGRSMRLHFEITMDINAFM VSPCEKYIIVQTPKDISIINLRTAKKIRTIGNLDLHSDDLWPIMRFSADDSLVVVCKTGY RPMDSTEVPEGHLNIYVSETMKLLKGRGSSGHSFAIPGLYKAEWNPVVGTQMAYVCELGP NQGWKAVVADMVVNEDGEVEQRVLNERNFLVATRLDMLWHPAGTFLCVRVASKGPTEYFL FHVAERNVPITRLSIKRGYIPTRFAWQTGGDKFAVLLKRDGVGAGLGETGVLQIFMIGKQ GPKVLHEVATSATHLFWAPRGGRLAAANFDKSLLHFFVLHDNNTITDKNKLSGISATNCE WDPTGRYFAVWVSSIHEQTLAPQYRIFDYTGNELFKKAIKPLSHFAWRPLPPTLLTQSDV KKARDMIKTLVRDYEATEMAHKAEEQERIDKERKSKEEDYIKRMKMAARYAEEKGMVQTR EEQRANSKWVRYNNNRLKALPDEEHMVHEDVTEYHLVSRRQVGTGVAKK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_171390.1.fa Sequence name : LdBPK_171390 Sequence length : 709 VALUES OF COMPUTED PARAMETERS Coef20 : 3.473 CoefTot : 0.000 ChDiff : 2 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.153 1.282 0.114 0.613 MesoH : -0.429 0.323 -0.347 0.235 MuHd_075 : 46.815 25.552 11.442 8.821 MuHd_095 : 10.754 15.334 6.240 3.433 MuHd_100 : 9.561 13.762 4.719 2.471 MuHd_105 : 7.705 9.696 3.091 1.604 Hmax_075 : 13.183 16.333 1.330 5.787 Hmax_095 : 2.500 12.800 0.246 3.833 Hmax_100 : -2.100 10.900 -1.308 3.180 Hmax_105 : 1.500 5.400 -0.993 3.300 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8152 0.1848 DFMC : 0.8808 0.1192
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 709 LdBPK_171390.1 MTDVNFGRHIIIDGLPNNVTPDKRDLFQRHFSRRIGELLGGEKFSLHLLTDPETALLSGAILSCVTEAQAEAALAKLNRF 80 PFTKSAVLTTYRWSSLEEARKDDGPYVPPPMANDDDEEEAELVHNMAEDPDARPQFLIKSGVSFDCDWYWFNWEKNEPDL 160 YRRRKISKDDPLCRWSEVDRDNKKLSSGMVCSALPVSRPLPVWSTYGSMVISQHEKGLRVWAGRSMRLHFEITMDINAFM 240 VSPCEKYIIVQTPKDISIINLRTAKKIRTIGNLDLHSDDLWPIMRFSADDSLVVVCKTGYRPMDSTEVPEGHLNIYVSET 320 MKLLKGRGSSGHSFAIPGLYKAEWNPVVGTQMAYVCELGPNQGWKAVVADMVVNEDGEVEQRVLNERNFLVATRLDMLWH 400 PAGTFLCVRVASKGPTEYFLFHVAERNVPITRLSIKRGYIPTRFAWQTGGDKFAVLLKRDGVGAGLGETGVLQIFMIGKQ 480 GPKVLHEVATSATHLFWAPRGGRLAAANFDKSLLHFFVLHDNNTITDKNKLSGISATNCEWDPTGRYFAVWVSSIHEQTL 560 APQYRIFDYTGNELFKKAIKPLSHFAWRPLPPTLLTQSDVKKARDMIKTLVRDYEATEMAHKAEEQERIDKERKSKEEDY 640 IKRMKMAARYAEEKGMVQTREEQRANSKWVRYNNNRLKALPDEEHMVHEDVTEYHLVSRRQVGTGVAKK 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ..................................................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_171390.1 8 TDVNFGR|HI 0.107 . LdBPK_171390.1 23 NNVTPDK|RD 0.058 . LdBPK_171390.1 24 NVTPDKR|DL 0.197 . LdBPK_171390.1 29 KRDLFQR|HF 0.127 . LdBPK_171390.1 33 FQRHFSR|RI 0.133 . LdBPK_171390.1 34 QRHFSRR|IG 0.198 . LdBPK_171390.1 43 ELLGGEK|FS 0.056 . LdBPK_171390.1 76 AEAALAK|LN 0.061 . LdBPK_171390.1 79 ALAKLNR|FP 0.100 . LdBPK_171390.1 84 NRFPFTK|SA 0.083 . LdBPK_171390.1 92 AVLTTYR|WS 0.080 . LdBPK_171390.1 100 SSLEEAR|KD 0.080 . LdBPK_171390.1 101 SLEEARK|DD 0.110 . LdBPK_171390.1 133 AEDPDAR|PQ 0.078 . LdBPK_171390.1 139 RPQFLIK|SG 0.073 . LdBPK_171390.1 155 YWFNWEK|NE 0.055 . LdBPK_171390.1 162 NEPDLYR|RR 0.074 . LdBPK_171390.1 163 EPDLYRR|RK 0.092 . LdBPK_171390.1 164 PDLYRRR|KI 0.124 . LdBPK_171390.1 165 DLYRRRK|IS 0.195 . LdBPK_171390.1 168 RRRKISK|DD 0.079 . LdBPK_171390.1 174 KDDPLCR|WS 0.092 . LdBPK_171390.1 180 RWSEVDR|DN 0.132 . LdBPK_171390.1 183 EVDRDNK|KL 0.113 . LdBPK_171390.1 184 VDRDNKK|LS 0.100 . LdBPK_171390.1 198 SALPVSR|PL 0.077 . LdBPK_171390.1 216 VISQHEK|GL 0.073 . LdBPK_171390.1 219 QHEKGLR|VW 0.068 . LdBPK_171390.1 224 LRVWAGR|SM 0.136 . LdBPK_171390.1 227 WAGRSMR|LH 0.263 . LdBPK_171390.1 246 MVSPCEK|YI 0.081 . LdBPK_171390.1 254 IIVQTPK|DI 0.081 . LdBPK_171390.1 262 ISIINLR|TA 0.105 . LdBPK_171390.1 265 INLRTAK|KI 0.155 . LdBPK_171390.1 266 NLRTAKK|IR 0.094 . LdBPK_171390.1 268 RTAKKIR|TI 0.137 . LdBPK_171390.1 285 DLWPIMR|FS 0.078 . LdBPK_171390.1 297 SLVVVCK|TG 0.065 . LdBPK_171390.1 301 VCKTGYR|PM 0.075 . LdBPK_171390.1 322 YVSETMK|LL 0.063 . LdBPK_171390.1 325 ETMKLLK|GR 0.077 . LdBPK_171390.1 327 MKLLKGR|GS 0.126 . LdBPK_171390.1 341 AIPGLYK|AE 0.056 . LdBPK_171390.1 365 GPNQGWK|AV 0.093 . LdBPK_171390.1 382 DGEVEQR|VL 0.070 . LdBPK_171390.1 387 QRVLNER|NF 0.076 . LdBPK_171390.1 394 NFLVATR|LD 0.069 . LdBPK_171390.1 409 GTFLCVR|VA 0.107 . LdBPK_171390.1 413 CVRVASK|GP 0.062 . LdBPK_171390.1 426 LFHVAER|NV 0.110 . LdBPK_171390.1 432 RNVPITR|LS 0.079 . LdBPK_171390.1 436 ITRLSIK|RG 0.059 . LdBPK_171390.1 437 TRLSIKR|GY 0.235 . LdBPK_171390.1 443 RGYIPTR|FA 0.160 . LdBPK_171390.1 452 WQTGGDK|FA 0.057 . LdBPK_171390.1 458 KFAVLLK|RD 0.064 . LdBPK_171390.1 459 FAVLLKR|DG 0.189 . LdBPK_171390.1 479 QIFMIGK|QG 0.068 . LdBPK_171390.1 483 IGKQGPK|VL 0.061 . LdBPK_171390.1 500 HLFWAPR|GG 0.087 . LdBPK_171390.1 503 WAPRGGR|LA 0.207 . LdBPK_171390.1 511 AAANFDK|SL 0.085 . LdBPK_171390.1 528 NNTITDK|NK 0.059 . LdBPK_171390.1 530 TITDKNK|LS 0.071 . LdBPK_171390.1 546 EWDPTGR|YF 0.083 . LdBPK_171390.1 565 TLAPQYR|IF 0.135 . LdBPK_171390.1 576 TGNELFK|KA 0.082 . LdBPK_171390.1 577 GNELFKK|AI 0.106 . LdBPK_171390.1 580 LFKKAIK|PL 0.063 . LdBPK_171390.1 588 LSHFAWR|PL 0.111 . LdBPK_171390.1 601 LTQSDVK|KA 0.074 . LdBPK_171390.1 602 TQSDVKK|AR 0.140 . LdBPK_171390.1 604 SDVKKAR|DM 0.177 . LdBPK_171390.1 608 KARDMIK|TL 0.064 . LdBPK_171390.1 612 MIKTLVR|DY 0.143 . LdBPK_171390.1 622 ATEMAHK|AE 0.063 . LdBPK_171390.1 628 KAEEQER|ID 0.077 . LdBPK_171390.1 631 EQERIDK|ER 0.095 . LdBPK_171390.1 633 ERIDKER|KS 0.104 . LdBPK_171390.1 634 RIDKERK|SK 0.104 . LdBPK_171390.1 636 DKERKSK|EE 0.155 . LdBPK_171390.1 642 KEEDYIK|RM 0.055 . LdBPK_171390.1 643 EEDYIKR|MK 0.179 . LdBPK_171390.1 645 DYIKRMK|MA 0.065 . LdBPK_171390.1 649 RMKMAAR|YA 0.201 . LdBPK_171390.1 654 ARYAEEK|GM 0.067 . LdBPK_171390.1 660 KGMVQTR|EE 0.089 . LdBPK_171390.1 664 QTREEQR|AN 0.104 . LdBPK_171390.1 668 EQRANSK|WV 0.072 . LdBPK_171390.1 671 ANSKWVR|YN 0.125 . LdBPK_171390.1 676 VRYNNNR|LK 0.071 . LdBPK_171390.1 678 YNNNRLK|AL 0.096 . LdBPK_171390.1 699 EYHLVSR|RQ 0.073 . LdBPK_171390.1 700 YHLVSRR|QV 0.349 . LdBPK_171390.1 708 VGTGVAK|K- 0.064 . LdBPK_171390.1 709 GTGVAKK|-- 0.108 . ____________________________^_________________

  • Fasta :-

    >LdBPK_171390.1 ATGACGGACGTCAACTTCGGTCGGCACATTATTATCGATGGGCTCCCTAACAATGTCACT CCCGATAAGCGCGACCTCTTCCAGCGCCACTTCTCGCGGCGCATCGGGGAGCTGCTCGGC GGTGAGAAGTTCAGCCTGCATCTCCTGACGGATCCGGAGACAGCGCTCCTATCGGGTGCA ATCCTCAGCTGTGTGACAGAGGCTCAGGCGGAGGCGGCGCTGGCGAAGCTGAATCGCTTC CCCTTCACCAAGTCTGCCGTGCTCACGACGTACCGCTGGAGCTCACTCGAGGAGGCGCGC AAGGACGATGGCCCGTACGTGCCGCCGCCTATGGCGAACGACGATGACGAGGAGGAGGCG GAGCTGGTGCACAATATGGCTGAGGACCCGGATGCGCGTCCGCAGTTTTTGATCAAGTCT GGCGTATCCTTCGACTGCGACTGGTATTGGTTCAACTGGGAGAAGAATGAGCCGGATCTG TACCGCCGCCGCAAGATCAGCAAGGACGACCCGCTCTGTCGCTGGTCCGAGGTGGACCGG GACAACAAGAAACTGAGCTCCGGCATGGTGTGCAGTGCACTGCCGGTGTCACGCCCGCTG CCGGTGTGGTCTACGTACGGCTCCATGGTGATCTCGCAGCACGAAAAGGGCCTGCGCGTG TGGGCCGGCCGCAGCATGCGCCTCCACTTCGAGATCACGATGGACATCAACGCCTTTATG GTGTCTCCGTGCGAGAAGTACATCATTGTTCAGACGCCGAAGGACATCAGCATCATCAAC CTGCGCACTGCAAAGAAGATCCGCACCATCGGAAACCTTGACCTGCACAGCGATGATCTC TGGCCTATCATGCGTTTCAGTGCTGATGATTCCCTGGTGGTGGTGTGCAAGACGGGCTAC CGCCCCATGGACTCGACCGAGGTGCCGGAAGGCCACCTGAACATCTACGTCTCCGAGACG ATGAAGCTGCTCAAGGGCCGCGGCAGCTCCGGCCATAGCTTCGCCATCCCTGGCCTGTAC AAGGCGGAGTGGAACCCGGTGGTGGGCACGCAGATGGCGTACGTCTGCGAGCTTGGCCCG AACCAAGGCTGGAAGGCTGTTGTGGCTGACATGGTGGTGAACGAGGACGGCGAGGTGGAG CAGCGCGTGCTGAACGAGCGCAACTTTCTGGTGGCAACGCGACTGGACATGCTGTGGCAC CCGGCAGGTACCTTTCTGTGCGTGAGGGTGGCGTCGAAGGGGCCGACGGAGTACTTCCTT TTCCACGTCGCGGAGCGCAACGTGCCCATCACTCGCCTCTCCATCAAGCGTGGCTACATC CCGACCCGCTTCGCGTGGCAGACCGGCGGTGACAAGTTTGCCGTACTCCTGAAGCGCGAT GGCGTCGGCGCCGGCCTTGGCGAGACCGGCGTGCTGCAGATCTTCATGATCGGCAAGCAA GGCCCCAAGGTGCTGCACGAGGTGGCCACATCGGCGACGCATCTGTTCTGGGCCCCCCGC GGCGGGCGACTGGCGGCTGCCAACTTCGACAAGTCATTGCTGCACTTCTTCGTGCTGCAC GACAACAACACCATCACGGACAAGAACAAGTTGAGCGGCATCAGCGCGACGAACTGTGAG TGGGACCCGACTGGCCGCTACTTCGCCGTGTGGGTGTCGTCGATTCACGAGCAGACGCTC GCCCCACAGTACCGCATCTTCGACTACACCGGCAACGAGCTATTCAAGAAGGCCATCAAG CCCCTCTCGCACTTCGCCTGGCGCCCGCTGCCGCCCACTCTGCTCACGCAGAGCGACGTG AAGAAGGCGCGCGACATGATAAAGACCCTCGTGCGCGACTACGAGGCTACCGAGATGGCG CATAAGGCTGAGGAGCAGGAGCGCATCGATAAGGAGCGCAAGTCGAAGGAGGAGGACTAC ATCAAGCGCATGAAGATGGCTGCCCGCTATGCTGAGGAGAAGGGCATGGTGCAGACGCGT GAGGAGCAGCGCGCTAACTCGAAGTGGGTTCGCTACAATAACAACCGCCTAAAGGCACTG CCGGACGAGGAGCACATGGTTCACGAGGACGTCACGGAGTACCACCTCGTGTCGCGTCGC CAGGTCGGCACGGGTGTGGCGAAGAAGTAA
  • Download Fasta

  • Fasta :-

    MTDVNFGRHIIIDGLPNNVTPDKRDLFQRHFSRRIGELLGGEKFSLHLLTDPETALLSGA ILSCVTEAQAEAALAKLNRFPFTKSAVLTTYRWSSLEEARKDDGPYVPPPMANDDDEEEA ELVHNMAEDPDARPQFLIKSGVSFDCDWYWFNWEKNEPDLYRRRKISKDDPLCRWSEVDR DNKKLSSGMVCSALPVSRPLPVWSTYGSMVISQHEKGLRVWAGRSMRLHFEITMDINAFM VSPCEKYIIVQTPKDISIINLRTAKKIRTIGNLDLHSDDLWPIMRFSADDSLVVVCKTGY RPMDSTEVPEGHLNIYVSETMKLLKGRGSSGHSFAIPGLYKAEWNPVVGTQMAYVCELGP NQGWKAVVADMVVNEDGEVEQRVLNERNFLVATRLDMLWHPAGTFLCVRVASKGPTEYFL FHVAERNVPITRLSIKRGYIPTRFAWQTGGDKFAVLLKRDGVGAGLGETGVLQIFMIGKQ GPKVLHEVATSATHLFWAPRGGRLAAANFDKSLLHFFVLHDNNTITDKNKLSGISATNCE WDPTGRYFAVWVSSIHEQTLAPQYRIFDYTGNELFKKAIKPLSHFAWRPLPPTLLTQSDV KKARDMIKTLVRDYEATEMAHKAEEQERIDKERKSKEEDYIKRMKMAARYAEEKGMVQTR EEQRANSKWVRYNNNRLKALPDEEHMVHEDVTEYHLVSRRQVGTGVAKK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_171390.1176 SLCRWSEVDR0.99unspLdBPK_171390.1176 SLCRWSEVDR0.99unspLdBPK_171390.1176 SLCRWSEVDR0.99unspLdBPK_171390.1287 SIMRFSADDS0.994unspLdBPK_171390.1434 SITRLSIKRG0.997unspLdBPK_171390.1635 SKERKSKEED0.998unspLdBPK_171390.195 SYRWSSLEEA0.998unspLdBPK_171390.1167 SRRKISKDDP0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India