LdBPK_171520.1 | otubain cysteine peptidase, Clan CA, family C65, putative

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_171520.1OTHER0.9998550.0001370.000008
No Results

  • Fasta :-

    >LdBPK_171520.1 MDEGLPIDASEAQLEAIRREVAHYPLLSLSLPLNKESMIVKEMEHDDAYLAQTLSLFGAS PVSTKQYDFDSIRYSRRDGNCFYRCAGFRLCELIVEHPDRAAEYVALLKSREESLSRLFG LFVFDFTDALAEILQGVADKTITSVAQVYNRFISDDGAYVLAALRYLISAYLQEHEEEYE PFVSGLGYGTVRDYCNAEVELVDHESDNVQLAAFAKAFNVCIKVYALDRNAGNNITEYSF NGEDNDAGDRLVVGLLYMPGHYNLLGRGPG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_171520.1.fa Sequence name : LdBPK_171520 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 3.393 CoefTot : 0.000 ChDiff : -20 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.159 1.594 0.047 0.637 MesoH : -0.750 0.473 -0.371 0.241 MuHd_075 : 20.773 6.134 4.068 3.084 MuHd_095 : 29.665 13.778 6.550 4.729 MuHd_100 : 19.731 6.952 4.168 2.895 MuHd_105 : 19.798 6.335 4.651 2.704 Hmax_075 : 3.500 8.167 -1.036 2.963 Hmax_095 : 2.800 7.525 -0.583 3.180 Hmax_100 : -2.300 4.100 -2.261 2.250 Hmax_105 : 2.800 9.450 0.191 4.037 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9352 0.0648 DFMC : 0.9479 0.0521
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 LdBPK_171520.1 MDEGLPIDASEAQLEAIRREVAHYPLLSLSLPLNKESMIVKEMEHDDAYLAQTLSLFGASPVSTKQYDFDSIRYSRRDGN 80 CFYRCAGFRLCELIVEHPDRAAEYVALLKSREESLSRLFGLFVFDFTDALAEILQGVADKTITSVAQVYNRFISDDGAYV 160 LAALRYLISAYLQEHEEEYEPFVSGLGYGTVRDYCNAEVELVDHESDNVQLAAFAKAFNVCIKVYALDRNAGNNITEYSF 240 NGEDNDAGDRLVVGLLYMPGHYNLLGRGPG 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_171520.1 18 AQLEAIR|RE 0.063 . LdBPK_171520.1 19 QLEAIRR|EV 0.159 . LdBPK_171520.1 35 LSLPLNK|ES 0.061 . LdBPK_171520.1 41 KESMIVK|EM 0.068 . LdBPK_171520.1 65 ASPVSTK|QY 0.060 . LdBPK_171520.1 73 YDFDSIR|YS 0.091 . LdBPK_171520.1 76 DSIRYSR|RD 0.191 . LdBPK_171520.1 77 SIRYSRR|DG 0.172 . LdBPK_171520.1 84 DGNCFYR|CA 0.130 . LdBPK_171520.1 89 YRCAGFR|LC 0.096 . LdBPK_171520.1 100 IVEHPDR|AA 0.118 . LdBPK_171520.1 109 EYVALLK|SR 0.070 . LdBPK_171520.1 111 VALLKSR|EE 0.080 . LdBPK_171520.1 117 REESLSR|LF 0.083 . LdBPK_171520.1 140 LQGVADK|TI 0.068 . LdBPK_171520.1 151 VAQVYNR|FI 0.135 . LdBPK_171520.1 165 YVLAALR|YL 0.073 . LdBPK_171520.1 192 LGYGTVR|DY 0.114 . LdBPK_171520.1 216 QLAAFAK|AF 0.076 . LdBPK_171520.1 223 AFNVCIK|VY 0.064 . LdBPK_171520.1 229 KVYALDR|NA 0.104 . LdBPK_171520.1 250 DNDAGDR|LV 0.082 . LdBPK_171520.1 267 HYNLLGR|GP 0.122 . ____________________________^_________________

  • Fasta :-

    >LdBPK_171520.1 ATGGATGAGGGACTGCCAATCGACGCGAGCGAGGCACAGCTCGAAGCTATCCGGAGGGAG GTGGCGCACTACCCGTTACTGTCGCTCTCGCTGCCGCTCAACAAGGAGTCGATGATTGTG AAGGAGATGGAGCACGACGACGCCTACCTTGCCCAAACGCTGTCGCTCTTTGGGGCCTCA CCGGTTTCCACAAAGCAGTACGACTTCGACAGCATACGCTACTCGCGCCGCGACGGCAAC TGCTTCTACCGCTGCGCCGGCTTTCGCCTGTGCGAGCTCATCGTCGAACACCCGGATAGG GCGGCGGAGTATGTGGCGCTGCTCAAATCGCGAGAGGAGAGCCTCTCCAGGTTGTTCGGC CTCTTCGTGTTCGATTTCACGGATGCCTTGGCGGAGATCCTGCAGGGTGTGGCAGACAAG ACGATCACTTCCGTCGCACAAGTCTACAATCGCTTCATCTCCGACGACGGCGCCTACGTT CTGGCGGCGCTACGCTACTTGATCTCCGCTTACCTGCAAGAGCACGAGGAGGAGTACGAG CCTTTCGTCAGCGGACTTGGCTACGGCACGGTGCGCGACTACTGCAACGCCGAGGTGGAG CTGGTGGATCACGAGAGCGACAATGTGCAGCTGGCCGCCTTTGCAAAGGCCTTCAACGTC TGCATCAAGGTCTACGCGCTGGACCGAAATGCAGGTAACAATATCACCGAGTACTCCTTC AACGGCGAGGACAACGACGCTGGAGACCGACTGGTGGTGGGCCTGCTTTACATGCCCGGC CACTACAACCTTCTCGGGCGGGGACCCGGGTGA
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  • Fasta :-

    MDEGLPIDASEAQLEAIRREVAHYPLLSLSLPLNKESMIVKEMEHDDAYLAQTLSLFGAS PVSTKQYDFDSIRYSRRDGNCFYRCAGFRLCELIVEHPDRAAEYVALLKSREESLSRLFG LFVFDFTDALAEILQGVADKTITSVAQVYNRFISDDGAYVLAALRYLISAYLQEHEEEYE PFVSGLGYGTVRDYCNAEVELVDHESDNVQLAAFAKAFNVCIKVYALDRNAGNNITEYSF NGEDNDAGDRLVVGLLYMPGHYNLLGRGPG

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_171520.1114 SSREESLSRL0.995unspLdBPK_171520.1114 SSREESLSRL0.995unspLdBPK_171520.1114 SSREESLSRL0.995unspLdBPK_171520.163 SASPVSTKQY0.994unspLdBPK_171520.175 SSIRYSRRDG0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India