LdBPK_201230.1 | cysteine peptidase, Clan CA, family C2, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_201230.1OTHER0.9999460.0000420.000011
No Results

  • Fasta :-

    >LdBPK_201230.1 MTDMNGKVDEFDEGSVVQKKYGPNDYRYGEPVYKGDATPCFEDGLLFRIVEKSNNRWSFY NDTIHTQMNVQIVFGRNSSLRALENTEMVKLENGSYRATVTVYPMETELFVEGEVNGFTS NIRALPLTEDYLKDMARQDYEFIKQETATLYNAVDKNATTDDMVRKCVQSKIKFVDFAFP PEQKSLQIGSLMKLKVLAWERPGMFLSDENARQARLFRNGVHPSNIDEGDLGDSWLTGAM AALSEFPDKIRDIFRHPESVEQGQKERECGIYRVTLNKNGWWTSLIVDDYLPVAGGRPKF ARSKGDPAELWPSILQKAYAKVFGGYGFIVAGDPLHALQDMSGFPCSSFDNAFVESTINE TYELFAHLKNYSDLGYQLVFTTPTREAIMTARGAISCGSPVQAERAYERSSLLLGHTYSV IRVGYFAEHDLRLLQLRNPWSQSSSDWNGPWNKRDENWNKYTEVADYFHFDSSDDGTFFM EWTDVQDYFVSCGVCFIQSPTYDYRIRGTFFQNVPTTCLEISVTRPMLINIILSQEDKRG TDKSENAPIMISVAHGMGAMTPMRVDLNSGFDNDHPSPEYAFLQSRDVSMFYEFKPENSP YLVVPRAMSQFAKLPFTLGLLCPYEIGKETSEVRVAFRALAPENRIFDNFQKFNCETVAT ETEFQAKGPKQFFPDIYVGTIIQTSDD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_201230.1.fa Sequence name : LdBPK_201230 Sequence length : 687 VALUES OF COMPUTED PARAMETERS Coef20 : 2.919 CoefTot : 0.000 ChDiff : -25 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.624 1.335 0.061 0.614 MesoH : -0.348 0.164 -0.327 0.253 MuHd_075 : 22.700 10.746 5.136 2.948 MuHd_095 : 16.114 14.450 4.158 2.831 MuHd_100 : 21.077 10.470 4.051 2.194 MuHd_105 : 26.016 9.803 4.207 2.650 Hmax_075 : -3.062 4.025 -2.815 1.811 Hmax_095 : 7.100 10.700 -0.281 3.600 Hmax_100 : 0.800 4.400 -2.696 1.720 Hmax_105 : 1.575 3.000 -2.930 1.710 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9757 0.0243 DFMC : 0.9458 0.0542
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 687 LdBPK_201230.1 MTDMNGKVDEFDEGSVVQKKYGPNDYRYGEPVYKGDATPCFEDGLLFRIVEKSNNRWSFYNDTIHTQMNVQIVFGRNSSL 80 RALENTEMVKLENGSYRATVTVYPMETELFVEGEVNGFTSNIRALPLTEDYLKDMARQDYEFIKQETATLYNAVDKNATT 160 DDMVRKCVQSKIKFVDFAFPPEQKSLQIGSLMKLKVLAWERPGMFLSDENARQARLFRNGVHPSNIDEGDLGDSWLTGAM 240 AALSEFPDKIRDIFRHPESVEQGQKERECGIYRVTLNKNGWWTSLIVDDYLPVAGGRPKFARSKGDPAELWPSILQKAYA 320 KVFGGYGFIVAGDPLHALQDMSGFPCSSFDNAFVESTINETYELFAHLKNYSDLGYQLVFTTPTREAIMTARGAISCGSP 400 VQAERAYERSSLLLGHTYSVIRVGYFAEHDLRLLQLRNPWSQSSSDWNGPWNKRDENWNKYTEVADYFHFDSSDDGTFFM 480 EWTDVQDYFVSCGVCFIQSPTYDYRIRGTFFQNVPTTCLEISVTRPMLINIILSQEDKRGTDKSENAPIMISVAHGMGAM 560 TPMRVDLNSGFDNDHPSPEYAFLQSRDVSMFYEFKPENSPYLVVPRAMSQFAKLPFTLGLLCPYEIGKETSEVRVAFRAL 640 APENRIFDNFQKFNCETVATETEFQAKGPKQFFPDIYVGTIIQTSDD 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_201230.1 7 MTDMNGK|VD 0.061 . LdBPK_201230.1 19 EGSVVQK|KY 0.084 . LdBPK_201230.1 20 GSVVQKK|YG 0.099 . LdBPK_201230.1 27 YGPNDYR|YG 0.098 . LdBPK_201230.1 34 YGEPVYK|GD 0.058 . LdBPK_201230.1 48 EDGLLFR|IV 0.141 . LdBPK_201230.1 52 LFRIVEK|SN 0.072 . LdBPK_201230.1 56 VEKSNNR|WS 0.074 . LdBPK_201230.1 76 VQIVFGR|NS 0.077 . LdBPK_201230.1 81 GRNSSLR|AL 0.172 . LdBPK_201230.1 90 ENTEMVK|LE 0.057 . LdBPK_201230.1 97 LENGSYR|AT 0.172 . LdBPK_201230.1 123 GFTSNIR|AL 0.076 . LdBPK_201230.1 133 LTEDYLK|DM 0.062 . LdBPK_201230.1 137 YLKDMAR|QD 0.102 . LdBPK_201230.1 144 QDYEFIK|QE 0.069 . LdBPK_201230.1 156 LYNAVDK|NA 0.073 . LdBPK_201230.1 165 TTDDMVR|KC 0.072 . LdBPK_201230.1 166 TDDMVRK|CV 0.131 . LdBPK_201230.1 171 RKCVQSK|IK 0.067 . LdBPK_201230.1 173 CVQSKIK|FV 0.103 . LdBPK_201230.1 184 AFPPEQK|SL 0.073 . LdBPK_201230.1 193 QIGSLMK|LK 0.053 . LdBPK_201230.1 195 GSLMKLK|VL 0.071 . LdBPK_201230.1 201 KVLAWER|PG 0.062 . LdBPK_201230.1 212 LSDENAR|QA 0.097 . LdBPK_201230.1 215 ENARQAR|LF 0.393 . LdBPK_201230.1 218 RQARLFR|NG 0.150 . LdBPK_201230.1 249 LSEFPDK|IR 0.069 . LdBPK_201230.1 251 EFPDKIR|DI 0.113 . LdBPK_201230.1 255 KIRDIFR|HP 0.129 . LdBPK_201230.1 265 SVEQGQK|ER 0.058 . LdBPK_201230.1 267 EQGQKER|EC 0.119 . LdBPK_201230.1 273 RECGIYR|VT 0.080 . LdBPK_201230.1 278 YRVTLNK|NG 0.056 . LdBPK_201230.1 297 LPVAGGR|PK 0.079 . LdBPK_201230.1 299 VAGGRPK|FA 0.081 . LdBPK_201230.1 302 GRPKFAR|SK 0.289 . LdBPK_201230.1 304 PKFARSK|GD 0.067 . LdBPK_201230.1 317 WPSILQK|AY 0.099 . LdBPK_201230.1 321 LQKAYAK|VF 0.076 . LdBPK_201230.1 369 ELFAHLK|NY 0.075 . LdBPK_201230.1 385 VFTTPTR|EA 0.077 . LdBPK_201230.1 392 EAIMTAR|GA 0.122 . LdBPK_201230.1 405 SPVQAER|AY 0.092 . LdBPK_201230.1 409 AERAYER|SS 0.119 . LdBPK_201230.1 422 HTYSVIR|VG 0.086 . LdBPK_201230.1 432 FAEHDLR|LL 0.072 . LdBPK_201230.1 437 LRLLQLR|NP 0.079 . LdBPK_201230.1 453 WNGPWNK|RD 0.061 . LdBPK_201230.1 454 NGPWNKR|DE 0.156 . LdBPK_201230.1 460 RDENWNK|YT 0.082 . LdBPK_201230.1 505 SPTYDYR|IR 0.101 . LdBPK_201230.1 507 TYDYRIR|GT 0.095 . LdBPK_201230.1 525 LEISVTR|PM 0.074 . LdBPK_201230.1 538 ILSQEDK|RG 0.063 . LdBPK_201230.1 539 LSQEDKR|GT 0.392 . LdBPK_201230.1 543 DKRGTDK|SE 0.077 . LdBPK_201230.1 564 GAMTPMR|VD 0.082 . LdBPK_201230.1 586 YAFLQSR|DV 0.139 . LdBPK_201230.1 595 SMFYEFK|PE 0.057 . LdBPK_201230.1 606 PYLVVPR|AM 0.092 . LdBPK_201230.1 613 AMSQFAK|LP 0.073 . LdBPK_201230.1 628 CPYEIGK|ET 0.075 . LdBPK_201230.1 634 KETSEVR|VA 0.090 . LdBPK_201230.1 638 EVRVAFR|AL 0.111 . LdBPK_201230.1 645 ALAPENR|IF 0.089 . LdBPK_201230.1 652 IFDNFQK|FN 0.070 . LdBPK_201230.1 667 ETEFQAK|GP 0.073 . LdBPK_201230.1 670 FQAKGPK|QF 0.066 . ____________________________^_________________

  • Fasta :-

    >LdBPK_201230.1 ATGACGGACATGAACGGCAAGGTAGACGAGTTCGATGAGGGCTCCGTCGTACAAAAGAAG TACGGCCCCAACGACTACCGGTACGGCGAGCCGGTGTACAAGGGCGATGCAACGCCGTGC TTCGAAGACGGCCTTCTCTTCCGCATTGTGGAGAAAAGCAACAACCGCTGGTCCTTTTAC AATGACACCATCCACACGCAGATGAATGTGCAGATCGTGTTTGGCCGCAATTCCTCCCTG CGTGCGCTGGAGAACACAGAAATGGTGAAGCTGGAGAACGGATCCTACCGCGCTACTGTG ACGGTGTACCCGATGGAGACGGAGCTCTTTGTGGAGGGCGAGGTAAACGGCTTCACTAGC AACATTCGTGCTCTGCCGCTGACGGAGGACTACCTCAAGGACATGGCTCGTCAGGATTAC GAGTTCATCAAACAGGAAACGGCGACCTTGTACAACGCTGTGGACAAGAACGCTACGACT GATGACATGGTTCGCAAGTGCGTGCAGAGCAAAATCAAGTTTGTCGACTTTGCCTTCCCG CCGGAGCAGAAGTCGCTGCAGATCGGCTCTCTCATGAAGCTGAAGGTGCTGGCGTGGGAG CGCCCGGGCATGTTCCTTTCCGACGAGAACGCCCGGCAGGCGCGCCTGTTTCGCAACGGC GTCCACCCATCCAACATCGACGAGGGTGATTTGGGTGACTCGTGGCTGACGGGCGCGATG GCAGCGTTGTCTGAGTTCCCGGACAAGATCCGTGATATCTTCCGCCACCCCGAGAGCGTG GAGCAGGGGCAGAAGGAGCGCGAGTGCGGCATCTACCGTGTGACGCTGAACAAGAACGGC TGGTGGACGAGCTTGATTGTCGACGACTACCTGCCGGTGGCCGGCGGCCGCCCAAAGTTT GCCCGCTCCAAGGGCGATCCGGCCGAGCTGTGGCCCTCCATTCTCCAGAAGGCGTATGCG AAGGTCTTTGGCGGGTACGGCTTCATTGTCGCTGGAGACCCGCTGCACGCGCTGCAGGAC ATGTCCGGATTCCCGTGCTCCTCTTTTGATAACGCGTTCGTGGAGAGCACTATCAACGAG ACGTATGAGCTGTTCGCGCATCTCAAGAACTACAGTGACCTGGGCTACCAGCTTGTGTTC ACCACCCCGACCCGCGAAGCCATCATGACGGCTCGCGGCGCCATCAGCTGCGGCTCCCCC GTGCAGGCGGAGCGTGCGTACGAGAGGTCCAGCCTGCTGCTGGGGCACACCTACTCCGTG ATTCGCGTGGGATACTTCGCGGAGCACGACCTGCGCCTTCTGCAGCTGCGGAACCCGTGG TCGCAGTCCTCCTCGGACTGGAATGGGCCTTGGAACAAGCGCGACGAGAACTGGAACAAG TACACGGAGGTGGCAGACTACTTCCACTTTGACAGCAGCGATGACGGCACCTTCTTCATG GAGTGGACCGACGTGCAGGACTACTTTGTCAGCTGCGGCGTGTGCTTCATTCAGAGCCCC ACGTACGACTACCGCATCCGCGGCACCTTCTTCCAAAACGTGCCGACGACATGCCTGGAG ATCTCCGTTACACGTCCGATGCTGATCAACATTATTCTCTCGCAGGAAGACAAGCGTGGC ACCGACAAGAGCGAGAACGCGCCGATCATGATTAGTGTGGCGCACGGCATGGGGGCGATG ACGCCGATGCGCGTGGACTTGAACAGCGGCTTCGACAACGACCACCCGTCGCCCGAGTAT GCATTCCTGCAGAGTCGTGACGTGAGCATGTTCTACGAATTCAAGCCGGAGAACTCGCCG TACCTCGTGGTGCCGCGTGCCATGAGCCAGTTCGCCAAGCTTCCCTTCACACTAGGCCTA CTGTGCCCGTACGAGATCGGCAAGGAGACGAGCGAGGTCCGCGTGGCCTTCCGCGCCCTC GCCCCGGAGAACCGCATCTTCGACAACTTCCAGAAGTTCAACTGCGAGACCGTGGCCACA GAGACGGAGTTCCAGGCAAAAGGCCCGAAGCAGTTTTTCCCTGACATCTACGTGGGTACC ATCATCCAGACGTCTGACGACTAA
  • Download Fasta

  • Fasta :-

    MTDMNGKVDEFDEGSVVQKKYGPNDYRYGEPVYKGDATPCFEDGLLFRIVEKSNNRWSFY NDTIHTQMNVQIVFGRNSSLRALENTEMVKLENGSYRATVTVYPMETELFVEGEVNGFTS NIRALPLTEDYLKDMARQDYEFIKQETATLYNAVDKNATTDDMVRKCVQSKIKFVDFAFP PEQKSLQIGSLMKLKVLAWERPGMFLSDENARQARLFRNGVHPSNIDEGDLGDSWLTGAM AALSEFPDKIRDIFRHPESVEQGQKERECGIYRVTLNKNGWWTSLIVDDYLPVAGGRPKF ARSKGDPAELWPSILQKAYAKVFGGYGFIVAGDPLHALQDMSGFPCSSFDNAFVESTINE TYELFAHLKNYSDLGYQLVFTTPTREAIMTARGAISCGSPVQAERAYERSSLLLGHTYSV IRVGYFAEHDLRLLQLRNPWSQSSSDWNGPWNKRDENWNKYTEVADYFHFDSSDDGTFFM EWTDVQDYFVSCGVCFIQSPTYDYRIRGTFFQNVPTTCLEISVTRPMLINIILSQEDKRG TDKSENAPIMISVAHGMGAMTPMRVDLNSGFDNDHPSPEYAFLQSRDVSMFYEFKPENSP YLVVPRAMSQFAKLPFTLGLLCPYEIGKETSEVRVAFRALAPENRIFDNFQKFNCETVAT ETEFQAKGPKQFFPDIYVGTIIQTSDD

  • title: catalytic site
  • coordinates: S234,H416,N438
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_201230.1569 SVDLNSGFDN0.994unspLdBPK_201230.1569 SVDLNSGFDN0.994unspLdBPK_201230.1569 SVDLNSGFDN0.994unspLdBPK_201230.1577 SNDHPSPEYA0.99unspLdBPK_201230.1303 SKFARSKGDP0.996unspLdBPK_201230.1534 SNIILSQEDK0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India