LdBPK_201740.1 | amidohydrolase, putative (fragment)

_IDPredictionOTHERSPmTPCS_Position
LdBPK_201740.1mTP0.2945440.0053880.700069CS pos: 35-36. RAS-LS. Pr: 0.3324
No Results

  • Fasta :-

    >LdBPK_201740.1 MCMCSCLSPHAAASLLHRLASGSAVVRCYHALRASLSKHFNDVFMQRGRRLPTVVCARPQ PHRLSRVSEAPLLVLHFSALLPFLPRLLIHCTPDGALQRTPHSSCLHISPLWRLVWKLSL SLHENTWIVGEQIITHIPHSIVDKKTFYMQPFISFIDAVKDEVVQWRRHIHEYPYVAYEE QPTADYVADVLSSMPAPLDIRRLTPNSVVADLRGGAGEGPMYALRADMDALPLQEESGEP FSSKRPGVMHACGHDAHTAMLLGAVKVLCQMRD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_201740.1.fa Sequence name : LdBPK_201740 Sequence length : 273 VALUES OF COMPUTED PARAMETERS Coef20 : 4.612 CoefTot : 0.296 ChDiff : 3 ZoneTo : 123 KR : 14 DE : 3 CleavSite : 60 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.271 1.824 0.187 0.611 MesoH : -0.074 0.485 -0.310 0.280 MuHd_075 : 45.568 22.903 10.619 8.501 MuHd_095 : 44.760 26.427 11.656 9.984 MuHd_100 : 36.821 26.620 10.460 8.785 MuHd_105 : 34.498 22.979 10.134 7.862 Hmax_075 : 18.433 25.700 3.737 5.343 Hmax_095 : 8.925 13.912 2.029 3.710 Hmax_100 : 8.800 17.500 0.891 4.420 Hmax_105 : 13.700 22.517 2.242 1.797 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0849 0.9151 DFMC : 0.0135 0.9865 This protein is probably imported in mitochondria. f(Ser) = 0.1220 f(Arg) = 0.0976 CMi = 0.59032 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 273 LdBPK_201740.1 MCMCSCLSPHAAASLLHRLASGSAVVRCYHALRASLSKHFNDVFMQRGRRLPTVVCARPQPHRLSRVSEAPLLVLHFSAL 80 LPFLPRLLIHCTPDGALQRTPHSSCLHISPLWRLVWKLSLSLHENTWIVGEQIITHIPHSIVDKKTFYMQPFISFIDAVK 160 DEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSVVADLRGGAGEGPMYALRADMDALPLQEESGEP 240 FSSKRPGVMHACGHDAHTAMLLGAVKVLCQMRD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_201740.1 18 AASLLHR|LA 0.120 . LdBPK_201740.1 27 SGSAVVR|CY 0.135 . LdBPK_201740.1 33 RCYHALR|AS 0.081 . LdBPK_201740.1 38 LRASLSK|HF 0.088 . LdBPK_201740.1 47 NDVFMQR|GR 0.073 . LdBPK_201740.1 49 VFMQRGR|RL 0.081 . LdBPK_201740.1 50 FMQRGRR|LP 0.244 . LdBPK_201740.1 58 PTVVCAR|PQ 0.076 . LdBPK_201740.1 63 ARPQPHR|LS 0.094 . LdBPK_201740.1 66 QPHRLSR|VS 0.352 . LdBPK_201740.1 86 LLPFLPR|LL 0.088 . LdBPK_201740.1 99 PDGALQR|TP 0.077 . LdBPK_201740.1 113 HISPLWR|LV 0.128 . LdBPK_201740.1 117 LWRLVWK|LS 0.060 . LdBPK_201740.1 144 PHSIVDK|KT 0.081 . LdBPK_201740.1 145 HSIVDKK|TF 0.115 . LdBPK_201740.1 160 SFIDAVK|DE 0.059 . LdBPK_201740.1 167 DEVVQWR|RH 0.089 . LdBPK_201740.1 168 EVVQWRR|HI 0.137 . LdBPK_201740.1 201 PAPLDIR|RL 0.065 . LdBPK_201740.1 202 APLDIRR|LT 0.104 . LdBPK_201740.1 213 SVVADLR|GG 0.098 . LdBPK_201740.1 225 GPMYALR|AD 0.116 . LdBPK_201740.1 244 GEPFSSK|RP 0.067 . LdBPK_201740.1 245 EPFSSKR|PG 0.139 . LdBPK_201740.1 266 MLLGAVK|VL 0.061 . LdBPK_201740.1 272 KVLCQMR|D- 0.107 . ____________________________^_________________

  • Fasta :-

    >LdBPK_201740.1 ATGTGCATGTGCAGCTGCCTGTCGCCTCACGCAGCTGCGTCTCTTCTCCATCGACTCGCT AGCGGTAGTGCAGTTGTCCGGTGCTACCACGCGTTGCGCGCCTCTCTGAGCAAACATTTC AACGATGTGTTTATGCAGCGAGGTCGTCGTCTTCCCACTGTCGTATGTGCCCGACCTCAG CCGCACCGTCTAAGCAGGGTTTCTGAGGCTCCTCTGCTCGTTCTCCACTTTTCTGCCCTC CTTCCTTTCCTCCCTCGTCTGCTCATTCATTGCACCCCTGACGGCGCTCTGCAACGAACG CCGCACTCTTCCTGCCTCCATATATCACCATTGTGGAGACTCGTGTGGAAGCTATCTCTA TCCCTCCATGAAAACACATGGATAGTGGGTGAGCAGATCATTACTCACATTCCTCACTCT ATCGTAGATAAAAAGACCTTTTACATGCAGCCGTTCATCTCATTCATCGACGCCGTAAAA GACGAGGTGGTGCAGTGGCGGCGCCACATCCACGAGTATCCATATGTTGCGTATGAGGAG CAGCCCACCGCCGACTACGTGGCGGACGTCCTCAGCAGCATGCCCGCACCGCTGGACATT CGCCGGCTGACGCCGAACAGCGTCGTGGCGGACCTGCGGGGTGGCGCTGGCGAGGGACCC ATGTACGCCCTGCGCGCCGACATGGATGCACTGCCGCTGCAGGAGGAGAGCGGCGAGCCC TTCAGCTCGAAGCGGCCAGGCGTGATGCACGCGTGTGGCCACGATGCCCACACGGCGATG CTGCTTGGGGCGGTGAAGGTGCTGTGCCAGATGCGCGAC
  • Download Fasta

  • Fasta :-

    MCMCSCLSPHAAASLLHRLASGSAVVRCYHALRASLSKHFNDVFMQRGRRLPTVVCARPQ PHRLSRVSEAPLLVLHFSALLPFLPRLLIHCTPDGALQRTPHSSCLHISPLWRLVWKLSL SLHENTWIVGEQIITHIPHSIVDKKTFYMQPFISFIDAVKDEVVQWRRHIHEYPYVAYEE QPTADYVADVLSSMPAPLDIRRLTPNSVVADLRGGAGEGPMYALRADMDALPLQEESGEP FSSKRPGVMHACGHDAHTAMLLGAVKVLCQMRD

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_201740.1242 SGEPFSSKRP0.992unspLdBPK_201740.1242 SGEPFSSKRP0.992unspLdBPK_201740.1242 SGEPFSSKRP0.992unspLdBPK_201740.1140 SHIPHSIVDK0.996unspLdBPK_201740.1204 TIRRLTPNSV0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India