LdBPK_210400.1 | mitochondrial processing peptidase alpha subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_210400.1mTP0.2579380.0013510.740712CS pos: 24-25. SAF-SA. Pr: 0.0876
No Results

  • Fasta :-

    >LdBPK_210400.1 MLRATSCLGIYEYQFGQPSLRSAFSARIAPAAKARSPGAVQSTKLTNGVRVVSHDLDGPV ASIGVYADAGPKYDPIATPGLSYVMRFALQTSNMDSSLFQIDRTMRSTGNAYGHGEVCKR YLSWKAEGRRDMWEKPFEMLATGVVAPRFHESDIERFRDTMDNQLEEMRWQNPREYAIDQ LETVAFYKEPLGAPRMVPRIANDRCSHKALLDHWAANFQPSRIVLAGVNVPHDALIAAYE KLPYKHSAEAPHHARAAAPKLSHSNEAAQFYAGRQNVEYESRAAVMGTMPDMQAEVIGAV GVPTHGRDEGAKQYATALVTREIYEEAMRSAHGSRAGSEHYGAQVFYRPYSSAGLIGYTV RGAPAEVKTMLQVASSAFPAAVDEAAVKRAAHCAYVRLLHDQVEMTRDYCDFLATSPNSV EELVQAVSGVTKANVEEAMKKMVAQKPATYATGDSFTFPMVASLSHA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_210400.1.fa Sequence name : LdBPK_210400 Sequence length : 467 VALUES OF COMPUTED PARAMETERS Coef20 : 3.733 CoefTot : -0.295 ChDiff : -1 ZoneTo : 54 KR : 7 DE : 1 CleavSite : 52 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.982 1.347 -0.020 0.562 MesoH : -0.630 0.201 -0.365 0.142 MuHd_075 : 36.933 22.806 8.882 7.988 MuHd_095 : 19.969 14.475 5.284 5.993 MuHd_100 : 19.794 15.516 6.715 5.064 MuHd_105 : 28.364 18.693 9.733 6.012 Hmax_075 : 11.433 11.200 0.601 4.515 Hmax_095 : 5.700 13.387 2.167 3.530 Hmax_100 : 12.300 12.600 1.904 3.530 Hmax_105 : 13.067 14.933 2.769 4.923 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3797 0.6203 DFMC : 0.2232 0.7768 This protein is probably imported in mitochondria. f(Ser) = 0.1296 f(Arg) = 0.0926 CMi = 0.64935 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 467 LdBPK_210400.1 MLRATSCLGIYEYQFGQPSLRSAFSARIAPAAKARSPGAVQSTKLTNGVRVVSHDLDGPVASIGVYADAGPKYDPIATPG 80 LSYVMRFALQTSNMDSSLFQIDRTMRSTGNAYGHGEVCKRYLSWKAEGRRDMWEKPFEMLATGVVAPRFHESDIERFRDT 160 MDNQLEEMRWQNPREYAIDQLETVAFYKEPLGAPRMVPRIANDRCSHKALLDHWAANFQPSRIVLAGVNVPHDALIAAYE 240 KLPYKHSAEAPHHARAAAPKLSHSNEAAQFYAGRQNVEYESRAAVMGTMPDMQAEVIGAVGVPTHGRDEGAKQYATALVT 320 REIYEEAMRSAHGSRAGSEHYGAQVFYRPYSSAGLIGYTVRGAPAEVKTMLQVASSAFPAAVDEAAVKRAAHCAYVRLLH 400 DQVEMTRDYCDFLATSPNSVEELVQAVSGVTKANVEEAMKKMVAQKPATYATGDSFTFPMVASLSHA 480 ................................................................................ 80 .........................P...................................................... 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_210400.1 3 ----MLR|AT 0.093 . LdBPK_210400.1 21 FGQPSLR|SA 0.154 . LdBPK_210400.1 27 RSAFSAR|IA 0.168 . LdBPK_210400.1 33 RIAPAAK|AR 0.078 . LdBPK_210400.1 35 APAAKAR|SP 0.388 . LdBPK_210400.1 44 GAVQSTK|LT 0.070 . LdBPK_210400.1 50 KLTNGVR|VV 0.117 . LdBPK_210400.1 72 YADAGPK|YD 0.058 . LdBPK_210400.1 86 GLSYVMR|FA 0.184 . LdBPK_210400.1 103 SLFQIDR|TM 0.080 . LdBPK_210400.1 106 QIDRTMR|ST 0.515 *ProP* LdBPK_210400.1 119 GHGEVCK|RY 0.060 . LdBPK_210400.1 120 HGEVCKR|YL 0.235 . LdBPK_210400.1 125 KRYLSWK|AE 0.082 . LdBPK_210400.1 129 SWKAEGR|RD 0.084 . LdBPK_210400.1 130 WKAEGRR|DM 0.181 . LdBPK_210400.1 135 RRDMWEK|PF 0.076 . LdBPK_210400.1 148 TGVVAPR|FH 0.099 . LdBPK_210400.1 156 HESDIER|FR 0.126 . LdBPK_210400.1 158 SDIERFR|DT 0.146 . LdBPK_210400.1 169 NQLEEMR|WQ 0.082 . LdBPK_210400.1 174 MRWQNPR|EY 0.098 . LdBPK_210400.1 188 ETVAFYK|EP 0.062 . LdBPK_210400.1 195 EPLGAPR|MV 0.107 . LdBPK_210400.1 199 APRMVPR|IA 0.145 . LdBPK_210400.1 204 PRIANDR|CS 0.113 . LdBPK_210400.1 208 NDRCSHK|AL 0.067 . LdBPK_210400.1 222 ANFQPSR|IV 0.122 . LdBPK_210400.1 241 LIAAYEK|LP 0.056 . LdBPK_210400.1 245 YEKLPYK|HS 0.068 . LdBPK_210400.1 255 EAPHHAR|AA 0.151 . LdBPK_210400.1 260 ARAAAPK|LS 0.085 . LdBPK_210400.1 274 AQFYAGR|QN 0.089 . LdBPK_210400.1 282 NVEYESR|AA 0.088 . LdBPK_210400.1 307 GVPTHGR|DE 0.144 . LdBPK_210400.1 312 GRDEGAK|QY 0.081 . LdBPK_210400.1 321 ATALVTR|EI 0.097 . LdBPK_210400.1 329 IYEEAMR|SA 0.156 . LdBPK_210400.1 335 RSAHGSR|AG 0.112 . LdBPK_210400.1 348 GAQVFYR|PY 0.143 . LdBPK_210400.1 361 LIGYTVR|GA 0.133 . LdBPK_210400.1 368 GAPAEVK|TM 0.059 . LdBPK_210400.1 388 VDEAAVK|RA 0.058 . LdBPK_210400.1 389 DEAAVKR|AA 0.293 . LdBPK_210400.1 397 AHCAYVR|LL 0.100 . LdBPK_210400.1 407 DQVEMTR|DY 0.107 . LdBPK_210400.1 432 AVSGVTK|AN 0.067 . LdBPK_210400.1 440 NVEEAMK|KM 0.056 . LdBPK_210400.1 441 VEEAMKK|MV 0.159 . LdBPK_210400.1 446 KKMVAQK|PA 0.084 . ____________________________^_________________

  • Fasta :-

    >LdBPK_210400.1 ATGCTGCGCGCGACGTCTTGCTTGGGTATCTACGAGTACCAGTTCGGGCAGCCCTCGCTG CGGAGCGCCTTCAGCGCAAGGATCGCGCCGGCTGCCAAGGCGCGCAGCCCCGGCGCGGTG CAGTCCACAAAGCTAACGAATGGCGTGCGTGTAGTGTCGCACGATCTCGACGGCCCGGTC GCGTCCATCGGCGTTTATGCGGATGCGGGACCGAAGTACGACCCCATCGCCACCCCCGGC CTGAGCTACGTCATGCGCTTCGCCCTGCAGACCTCCAACATGGACAGCTCCCTCTTCCAG ATCGACCGCACGATGCGCTCCACCGGCAACGCGTACGGCCACGGTGAGGTGTGCAAGCGC TATCTGAGCTGGAAGGCGGAGGGCCGCCGTGACATGTGGGAGAAGCCATTTGAGATGCTC GCCACCGGCGTCGTCGCACCGCGCTTCCACGAGAGCGATATTGAGCGCTTCCGCGACACG ATGGACAACCAGCTGGAGGAGATGCGCTGGCAGAACCCTCGAGAATACGCTATCGACCAG CTGGAGACGGTGGCCTTCTACAAGGAGCCGCTCGGGGCGCCGCGCATGGTGCCTCGCATC GCAAACGACCGCTGCAGCCACAAGGCGCTGCTAGACCATTGGGCCGCGAACTTCCAGCCC AGCCGTATCGTCCTGGCTGGTGTGAACGTGCCGCACGACGCCCTGATAGCCGCCTATGAG AAACTGCCGTACAAGCACTCGGCCGAGGCCCCGCACCACGCGCGCGCCGCCGCGCCGAAG CTGTCCCACAGCAACGAGGCGGCCCAGTTCTACGCGGGCCGGCAGAACGTCGAGTACGAG AGCCGCGCCGCTGTCATGGGCACAATGCCTGACATGCAGGCGGAGGTGATCGGTGCCGTC GGCGTGCCTACCCACGGCCGTGACGAGGGCGCCAAGCAATATGCGACGGCGCTGGTGACG CGCGAGATCTACGAGGAGGCGATGCGCAGCGCGCACGGCAGCCGCGCCGGCTCGGAGCAC TACGGCGCACAGGTCTTCTACCGCCCGTACTCGTCTGCCGGCCTGATCGGTTACACTGTG CGCGGTGCGCCGGCCGAGGTGAAGACGATGCTTCAGGTAGCCTCCAGCGCCTTTCCGGCA GCCGTTGACGAGGCGGCCGTGAAGCGTGCGGCCCACTGCGCGTACGTGCGCCTGCTGCAC GACCAGGTGGAGATGACACGCGACTACTGCGACTTCCTCGCCACATCGCCCAACTCAGTC GAGGAACTCGTGCAGGCAGTCAGCGGCGTCACGAAGGCCAACGTGGAAGAAGCGATGAAG AAGATGGTCGCGCAGAAGCCGGCCACGTACGCGACGGGCGACAGCTTCACGTTTCCCATG GTCGCGTCGCTGAGTCACGCTTAA
  • Download Fasta

  • Fasta :-

    MLRATSCLGIYEYQFGQPSLRSAFSARIAPAAKARSPGAVQSTKLTNGVRVVSHDLDGPV ASIGVYADAGPKYDPIATPGLSYVMRFALQTSNMDSSLFQIDRTMRSTGNAYGHGEVCKR YLSWKAEGRRDMWEKPFEMLATGVVAPRFHESDIERFRDTMDNQLEEMRWQNPREYAIDQ LETVAFYKEPLGAPRMVPRIANDRCSHKALLDHWAANFQPSRIVLAGVNVPHDALIAAYE KLPYKHSAEAPHHARAAAPKLSHSNEAAQFYAGRQNVEYESRAAVMGTMPDMQAEVIGAV GVPTHGRDEGAKQYATALVTREIYEEAMRSAHGSRAGSEHYGAQVFYRPYSSAGLIGYTV RGAPAEVKTMLQVASSAFPAAVDEAAVKRAAHCAYVRLLHDQVEMTRDYCDFLATSPNSV EELVQAVSGVTKANVEEAMKKMVAQKPATYATGDSFTFPMVASLSHA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_210400.1419 STSPNSVEEL0.997unspLdBPK_210400.1419 STSPNSVEEL0.997unspLdBPK_210400.1419 STSPNSVEEL0.997unspLdBPK_210400.1123 SKRYLSWKAE0.995unspLdBPK_210400.1206 SNDRCSHKAL0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India