LdBPK_220490.1 | proteasome regulatory ATPase subunit 5, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_220490.1OTHER0.9999790.0000020.000019
No Results

  • Fasta :-

    >LdBPK_220490.1 MPSAKEVAEARAYAQAQEEAADKRKLQNITEAELNELDTLTNDQLRTRARNLHQETQTLR SFENRSKQELISLKRDVEMGKKRVKENNRLPYLVASIAEVLDLSDDEDEAEELAVGRKKP ERKQKSAVVKTTNRYTVFLPVAGLVDAERLSPEDLVGVNKDTFLVLDTLPPDYDSRVKAM EIDEKPKEKYTDVGGLDKQINELIEAVVMPITHKEQFEKIGIQPPKGVLLYGSPGTGKTM LARACAAATDACILRLAGPQLVQMFIGDGARIVRDAFALAKKKAPSIIFIDELDAVGSKR SDEGKHGSREVQRTMLELLSQLDGFGSSDDVKVIAATNRIDVLDPALLRSGRLDRKVEFP MPDEEARASILEIHSRRMNLDKDVNFKELARCTDDMNGAQLKAVCVEAGMLALRHDRTYV AHEDFVEGVAAVQARKKTNLNYYA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_220490.1.fa Sequence name : LdBPK_220490 Sequence length : 444 VALUES OF COMPUTED PARAMETERS Coef20 : 3.578 CoefTot : -0.113 ChDiff : -7 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.635 1.265 0.055 0.438 MesoH : -0.459 0.545 -0.267 0.228 MuHd_075 : 13.619 5.439 4.103 3.030 MuHd_095 : 13.971 11.396 4.556 1.713 MuHd_100 : 2.608 7.155 1.781 0.339 MuHd_105 : 13.261 9.036 4.555 2.429 Hmax_075 : 3.700 3.700 -0.862 2.050 Hmax_095 : -3.100 3.400 -2.774 0.998 Hmax_100 : -3.100 1.700 -3.506 0.830 Hmax_105 : 4.550 6.183 -0.479 2.252 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9418 0.0582 DFMC : 0.9482 0.0518
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 444 LdBPK_220490.1 MPSAKEVAEARAYAQAQEEAADKRKLQNITEAELNELDTLTNDQLRTRARNLHQETQTLRSFENRSKQELISLKRDVEMG 80 KKRVKENNRLPYLVASIAEVLDLSDDEDEAEELAVGRKKPERKQKSAVVKTTNRYTVFLPVAGLVDAERLSPEDLVGVNK 160 DTFLVLDTLPPDYDSRVKAMEIDEKPKEKYTDVGGLDKQINELIEAVVMPITHKEQFEKIGIQPPKGVLLYGSPGTGKTM 240 LARACAAATDACILRLAGPQLVQMFIGDGARIVRDAFALAKKKAPSIIFIDELDAVGSKRSDEGKHGSREVQRTMLELLS 320 QLDGFGSSDDVKVIAATNRIDVLDPALLRSGRLDRKVEFPMPDEEARASILEIHSRRMNLDKDVNFKELARCTDDMNGAQ 400 LKAVCVEAGMLALRHDRTYVAHEDFVEGVAAVQARKKTNLNYYA 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_220490.1 5 --MPSAK|EV 0.089 . LdBPK_220490.1 11 KEVAEAR|AY 0.114 . LdBPK_220490.1 23 QEEAADK|RK 0.059 . LdBPK_220490.1 24 EEAADKR|KL 0.174 . LdBPK_220490.1 25 EAADKRK|LQ 0.085 . LdBPK_220490.1 46 LTNDQLR|TR 0.092 . LdBPK_220490.1 48 NDQLRTR|AR 0.084 . LdBPK_220490.1 50 QLRTRAR|NL 0.162 . LdBPK_220490.1 60 QETQTLR|SF 0.100 . LdBPK_220490.1 65 LRSFENR|SK 0.197 . LdBPK_220490.1 67 SFENRSK|QE 0.060 . LdBPK_220490.1 74 QELISLK|RD 0.054 . LdBPK_220490.1 75 ELISLKR|DV 0.368 . LdBPK_220490.1 81 RDVEMGK|KR 0.058 . LdBPK_220490.1 82 DVEMGKK|RV 0.081 . LdBPK_220490.1 83 VEMGKKR|VK 0.178 . LdBPK_220490.1 85 MGKKRVK|EN 0.061 . LdBPK_220490.1 89 RVKENNR|LP 0.068 . LdBPK_220490.1 117 EELAVGR|KK 0.068 . LdBPK_220490.1 118 ELAVGRK|KP 0.086 . LdBPK_220490.1 119 LAVGRKK|PE 0.101 . LdBPK_220490.1 122 GRKKPER|KQ 0.093 . LdBPK_220490.1 123 RKKPERK|QK 0.143 . LdBPK_220490.1 125 KPERKQK|SA 0.391 . LdBPK_220490.1 130 QKSAVVK|TT 0.086 . LdBPK_220490.1 134 VVKTTNR|YT 0.073 . LdBPK_220490.1 149 GLVDAER|LS 0.079 . LdBPK_220490.1 160 DLVGVNK|DT 0.083 . LdBPK_220490.1 176 PPDYDSR|VK 0.074 . LdBPK_220490.1 178 DYDSRVK|AM 0.061 . LdBPK_220490.1 185 AMEIDEK|PK 0.067 . LdBPK_220490.1 187 EIDEKPK|EK 0.065 . LdBPK_220490.1 189 DEKPKEK|YT 0.093 . LdBPK_220490.1 198 DVGGLDK|QI 0.062 . LdBPK_220490.1 214 VMPITHK|EQ 0.060 . LdBPK_220490.1 219 HKEQFEK|IG 0.068 . LdBPK_220490.1 226 IGIQPPK|GV 0.083 . LdBPK_220490.1 238 GSPGTGK|TM 0.054 . LdBPK_220490.1 243 GKTMLAR|AC 0.108 . LdBPK_220490.1 255 TDACILR|LA 0.180 . LdBPK_220490.1 271 FIGDGAR|IV 0.131 . LdBPK_220490.1 274 DGARIVR|DA 0.354 . LdBPK_220490.1 281 DAFALAK|KK 0.061 . LdBPK_220490.1 282 AFALAKK|KA 0.093 . LdBPK_220490.1 283 FALAKKK|AP 0.108 . LdBPK_220490.1 299 LDAVGSK|RS 0.065 . LdBPK_220490.1 300 DAVGSKR|SD 0.359 . LdBPK_220490.1 305 KRSDEGK|HG 0.090 . LdBPK_220490.1 309 EGKHGSR|EV 0.090 . LdBPK_220490.1 313 GSREVQR|TM 0.103 . LdBPK_220490.1 332 GSSDDVK|VI 0.068 . LdBPK_220490.1 339 VIAATNR|ID 0.071 . LdBPK_220490.1 349 LDPALLR|SG 0.080 . LdBPK_220490.1 352 ALLRSGR|LD 0.258 . LdBPK_220490.1 355 RSGRLDR|KV 0.395 . LdBPK_220490.1 356 SGRLDRK|VE 0.074 . LdBPK_220490.1 367 MPDEEAR|AS 0.107 . LdBPK_220490.1 376 ILEIHSR|RM 0.075 . LdBPK_220490.1 377 LEIHSRR|MN 0.152 . LdBPK_220490.1 382 RRMNLDK|DV 0.140 . LdBPK_220490.1 387 DKDVNFK|EL 0.065 . LdBPK_220490.1 391 NFKELAR|CT 0.098 . LdBPK_220490.1 402 MNGAQLK|AV 0.096 . LdBPK_220490.1 414 AGMLALR|HD 0.087 . LdBPK_220490.1 417 LALRHDR|TY 0.227 . LdBPK_220490.1 435 VAAVQAR|KK 0.112 . LdBPK_220490.1 436 AAVQARK|KT 0.067 . LdBPK_220490.1 437 AVQARKK|TN 0.081 . ____________________________^_________________

  • Fasta :-

    >LdBPK_220490.1 ATGCCGTCCGCGAAGGAGGTAGCGGAGGCGCGCGCCTACGCGCAAGCGCAGGAAGAGGCC GCCGACAAGCGCAAGCTGCAGAACATCACCGAGGCGGAGCTGAATGAGCTTGACACCCTC ACGAACGACCAGCTGCGCACACGCGCGCGCAACCTGCACCAGGAGACGCAGACACTCCGT AGCTTCGAGAACCGCTCGAAGCAGGAGTTGATCTCCCTCAAGCGGGACGTGGAGATGGGC AAAAAGCGTGTCAAGGAGAACAACCGCCTGCCTTACCTCGTCGCGAGCATTGCCGAAGTG CTTGACTTGAGCGACGACGAGGACGAGGCAGAGGAGCTGGCCGTCGGCCGCAAGAAGCCG GAGCGGAAGCAGAAAAGCGCCGTGGTAAAGACGACGAATCGGTACACCGTGTTCCTGCCG GTCGCCGGCCTCGTTGACGCGGAGCGGCTGTCGCCGGAGGATCTTGTAGGCGTGAACAAG GACACATTCCTAGTGCTCGACACGCTGCCGCCGGACTACGACAGCCGTGTCAAGGCGATG GAGATCGACGAAAAGCCGAAGGAGAAGTACACAGATGTCGGTGGACTGGATAAGCAAATC AACGAGCTGATTGAAGCTGTCGTGATGCCCATCACGCACAAGGAGCAGTTCGAGAAGATT GGCATCCAGCCCCCAAAGGGGGTACTGCTGTACGGGTCGCCCGGTACGGGAAAGACGATG CTGGCGCGTGCCTGTGCGGCAGCGACGGACGCATGTATCCTGCGCCTTGCCGGGCCGCAG CTGGTGCAGATGTTCATCGGCGACGGTGCCCGCATTGTGCGCGACGCGTTTGCTCTTGCG AAGAAGAAAGCGCCTTCCATTATTTTCATCGACGAGCTCGACGCCGTCGGCTCGAAGCGC TCGGACGAGGGCAAGCACGGCAGCCGCGAGGTGCAGCGCACCATGCTAGAGCTACTCTCC CAGCTGGATGGCTTTGGCAGCAGCGACGATGTGAAGGTGATCGCCGCTACCAATCGCATT GACGTACTTGACCCGGCGCTGCTGCGCAGTGGCCGCCTAGACCGCAAGGTGGAGTTCCCA ATGCCGGACGAGGAGGCGCGCGCCAGCATTTTGGAGATCCACTCGCGCCGCATGAATCTC GACAAGGACGTGAATTTCAAGGAGCTTGCACGATGCACAGATGACATGAACGGCGCGCAG CTCAAGGCTGTGTGCGTCGAGGCTGGCATGCTGGCCCTGCGCCACGATCGCACGTATGTG GCACACGAGGACTTCGTTGAGGGCGTGGCCGCGGTGCAGGCGCGCAAGAAGACGAACCTC AACTACTATGCATGA
  • Download Fasta

  • Fasta :-

    MPSAKEVAEARAYAQAQEEAADKRKLQNITEAELNELDTLTNDQLRTRARNLHQETQTLR SFENRSKQELISLKRDVEMGKKRVKENNRLPYLVASIAEVLDLSDDEDEAEELAVGRKKP ERKQKSAVVKTTNRYTVFLPVAGLVDAERLSPEDLVGVNKDTFLVLDTLPPDYDSRVKAM EIDEKPKEKYTDVGGLDKQINELIEAVVMPITHKEQFEKIGIQPPKGVLLYGSPGTGKTM LARACAAATDACILRLAGPQLVQMFIGDGARIVRDAFALAKKKAPSIIFIDELDAVGSKR SDEGKHGSREVQRTMLELLSQLDGFGSSDDVKVIAATNRIDVLDPALLRSGRLDRKVEFP MPDEEARASILEIHSRRMNLDKDVNFKELARCTDDMNGAQLKAVCVEAGMLALRHDRTYV AHEDFVEGVAAVQARKKTNLNYYA

  • title: ATP binding site
  • coordinates: S233,P234,G235,T236,G237,K238,T239,M240,D291,N338
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_220490.1190 YPKEKYTDVG0.992unspLdBPK_220490.1190 YPKEKYTDVG0.992unspLdBPK_220490.1190 YPKEKYTDVG0.992unspLdBPK_220490.172 SQELISLKRD0.993unspLdBPK_220490.1151 SAERLSPEDL0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India