LdBPK_240630.1 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_240630.1OTHER0.9998210.0000170.000162
No Results

  • Fasta :-

    >LdBPK_240630.1 MDVAHNRSLGFAGKEILFRKIEFERYRKPHVVEYPRSAVVLNPQHTRQLRDAMCTQRQGV EHNSSDADDGDQGEAPRRYSDSDDDDDDDPQRVDKATQLCSDAQFRGSLHLCWQAITPVG LGLMNLGNTCFANSVLQALAHTPAVAQYFMNTFRSADSQLGAPFDFAFALAETFRKMQHA PQQGRTGGGGAYRPGQIMSNLRLLSKHFSIGRQSDAHEFAVQLLFSCQKSLLHRLVGSKK VHPRVAHTTALHRICGGYLLSQVTWSRQEEIQQLLRAGKQQEAMDLKMEAKQAEGKRAQR ASRHGLDPQTLCSNTYDPFTILSVELAGHTLQHCLDKFCAVEELDGRSYLSPRQVGVRAK KKLSIHVPPPVFVIHVKRFTPSGSKINKHVLFPLELDITRYCTLLSSSSSPPPPPNHLQP HNGMSSPATTKRADCQYELNAVCVHEGRSIDYGHYYTLAKAPNGMWYEFNDSHVSRLSED QLQQAQVYMLFYSRKPTVAAEMMQPPHQQQHNIRGSAPASVSSSAASKLGAMTAVEEDGA VGQELSESEVQVLLEKRRAVQRQAGSLNGCRSSSSATAAEKPQLLSNTSGDSDDEGHAVE PTSLSSSKSARAQTFKRMQEALPTDSDSNSDDEKQDRAYVLRLPAQLNGCTVQDSHIEAD VAPQPSRRDDEHDAPADGEAPLKLAKVSLYGGIIKSMKRMLKDGADGGASTDTTAPQQQR KSPNFRVGRNAVQALHQRKVLNTPETVRRPASAPKFQQRIRDPMWEMEMDRGKVKKVKSK EKAPDPFEGVNPFQEVSRGMFDVRGRRRRA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_240630.1.fa Sequence name : LdBPK_240630 Sequence length : 810 VALUES OF COMPUTED PARAMETERS Coef20 : 3.889 CoefTot : 0.000 ChDiff : 12 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.312 1.100 0.123 0.538 MesoH : 0.240 0.477 -0.213 0.299 MuHd_075 : 15.872 12.876 5.831 2.555 MuHd_095 : 24.227 10.911 5.769 4.252 MuHd_100 : 12.603 3.644 2.183 2.689 MuHd_105 : 1.986 3.456 2.630 1.690 Hmax_075 : 15.100 15.200 2.702 5.420 Hmax_095 : 10.762 9.975 0.413 4.165 Hmax_100 : 6.400 6.800 -1.037 3.360 Hmax_105 : 8.500 12.000 1.270 4.880 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8110 0.1890 DFMC : 0.8374 0.1626
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 810 LdBPK_240630.1 MDVAHNRSLGFAGKEILFRKIEFERYRKPHVVEYPRSAVVLNPQHTRQLRDAMCTQRQGVEHNSSDADDGDQGEAPRRYS 80 DSDDDDDDDPQRVDKATQLCSDAQFRGSLHLCWQAITPVGLGLMNLGNTCFANSVLQALAHTPAVAQYFMNTFRSADSQL 160 GAPFDFAFALAETFRKMQHAPQQGRTGGGGAYRPGQIMSNLRLLSKHFSIGRQSDAHEFAVQLLFSCQKSLLHRLVGSKK 240 VHPRVAHTTALHRICGGYLLSQVTWSRQEEIQQLLRAGKQQEAMDLKMEAKQAEGKRAQRASRHGLDPQTLCSNTYDPFT 320 ILSVELAGHTLQHCLDKFCAVEELDGRSYLSPRQVGVRAKKKLSIHVPPPVFVIHVKRFTPSGSKINKHVLFPLELDITR 400 YCTLLSSSSSPPPPPNHLQPHNGMSSPATTKRADCQYELNAVCVHEGRSIDYGHYYTLAKAPNGMWYEFNDSHVSRLSED 480 QLQQAQVYMLFYSRKPTVAAEMMQPPHQQQHNIRGSAPASVSSSAASKLGAMTAVEEDGAVGQELSESEVQVLLEKRRAV 560 QRQAGSLNGCRSSSSATAAEKPQLLSNTSGDSDDEGHAVEPTSLSSSKSARAQTFKRMQEALPTDSDSNSDDEKQDRAYV 640 LRLPAQLNGCTVQDSHIEADVAPQPSRRDDEHDAPADGEAPLKLAKVSLYGGIIKSMKRMLKDGADGGASTDTTAPQQQR 720 KSPNFRVGRNAVQALHQRKVLNTPETVRRPASAPKFQQRIRDPMWEMEMDRGKVKKVKSKEKAPDPFEGVNPFQEVSRGM 800 FDVRGRRRRA 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ........P. 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_240630.1 7 MDVAHNR|SL 0.201 . LdBPK_240630.1 14 SLGFAGK|EI 0.060 . LdBPK_240630.1 19 GKEILFR|KI 0.097 . LdBPK_240630.1 20 KEILFRK|IE 0.070 . LdBPK_240630.1 25 RKIEFER|YR 0.088 . LdBPK_240630.1 27 IEFERYR|KP 0.090 . LdBPK_240630.1 28 EFERYRK|PH 0.117 . LdBPK_240630.1 36 HVVEYPR|SA 0.129 . LdBPK_240630.1 47 LNPQHTR|QL 0.124 . LdBPK_240630.1 50 QHTRQLR|DA 0.421 . LdBPK_240630.1 57 DAMCTQR|QG 0.076 . LdBPK_240630.1 77 DQGEAPR|RY 0.090 . LdBPK_240630.1 78 QGEAPRR|YS 0.123 . LdBPK_240630.1 92 DDDDPQR|VD 0.070 . LdBPK_240630.1 95 DPQRVDK|AT 0.127 . LdBPK_240630.1 106 CSDAQFR|GS 0.086 . LdBPK_240630.1 154 YFMNTFR|SA 0.249 . LdBPK_240630.1 175 ALAETFR|KM 0.096 . LdBPK_240630.1 176 LAETFRK|MQ 0.085 . LdBPK_240630.1 185 HAPQQGR|TG 0.096 . LdBPK_240630.1 193 GGGGAYR|PG 0.074 . LdBPK_240630.1 202 QIMSNLR|LL 0.095 . LdBPK_240630.1 206 NLRLLSK|HF 0.073 . LdBPK_240630.1 212 KHFSIGR|QS 0.112 . LdBPK_240630.1 229 LLFSCQK|SL 0.075 . LdBPK_240630.1 234 QKSLLHR|LV 0.158 . LdBPK_240630.1 239 HRLVGSK|KV 0.082 . LdBPK_240630.1 240 RLVGSKK|VH 0.090 . LdBPK_240630.1 244 SKKVHPR|VA 0.165 . LdBPK_240630.1 253 HTTALHR|IC 0.095 . LdBPK_240630.1 267 SQVTWSR|QE 0.092 . LdBPK_240630.1 276 EIQQLLR|AG 0.088 . LdBPK_240630.1 279 QLLRAGK|QQ 0.135 . LdBPK_240630.1 287 QEAMDLK|ME 0.062 . LdBPK_240630.1 291 DLKMEAK|QA 0.096 . LdBPK_240630.1 296 AKQAEGK|RA 0.071 . LdBPK_240630.1 297 KQAEGKR|AQ 0.242 . LdBPK_240630.1 300 EGKRAQR|AS 0.287 . LdBPK_240630.1 303 RAQRASR|HG 0.215 . LdBPK_240630.1 337 LQHCLDK|FC 0.077 . LdBPK_240630.1 347 VEELDGR|SY 0.078 . LdBPK_240630.1 353 RSYLSPR|QV 0.150 . LdBPK_240630.1 358 PRQVGVR|AK 0.092 . LdBPK_240630.1 360 QVGVRAK|KK 0.061 . LdBPK_240630.1 361 VGVRAKK|KL 0.261 . LdBPK_240630.1 362 GVRAKKK|LS 0.126 . LdBPK_240630.1 377 VFVIHVK|RF 0.065 . LdBPK_240630.1 378 FVIHVKR|FT 0.208 . LdBPK_240630.1 385 FTPSGSK|IN 0.054 . LdBPK_240630.1 388 SGSKINK|HV 0.083 . LdBPK_240630.1 400 LELDITR|YC 0.070 . LdBPK_240630.1 431 SSPATTK|RA 0.067 . LdBPK_240630.1 432 SPATTKR|AD 0.395 . LdBPK_240630.1 448 VCVHEGR|SI 0.157 . LdBPK_240630.1 460 HYYTLAK|AP 0.060 . LdBPK_240630.1 476 NDSHVSR|LS 0.204 . LdBPK_240630.1 494 YMLFYSR|KP 0.072 . LdBPK_240630.1 495 MLFYSRK|PT 0.131 . LdBPK_240630.1 514 QQQHNIR|GS 0.112 . LdBPK_240630.1 528 SSSAASK|LG 0.063 . LdBPK_240630.1 556 VQVLLEK|RR 0.054 . LdBPK_240630.1 557 QVLLEKR|RA 0.142 . LdBPK_240630.1 558 VLLEKRR|AV 0.204 . LdBPK_240630.1 562 KRRAVQR|QA 0.167 . LdBPK_240630.1 571 GSLNGCR|SS 0.123 . LdBPK_240630.1 581 SATAAEK|PQ 0.056 . LdBPK_240630.1 608 TSLSSSK|SA 0.113 . LdBPK_240630.1 611 SSSKSAR|AQ 0.199 . LdBPK_240630.1 616 ARAQTFK|RM 0.077 . LdBPK_240630.1 617 RAQTFKR|MQ 0.249 . LdBPK_240630.1 634 SNSDDEK|QD 0.071 . LdBPK_240630.1 637 DDEKQDR|AY 0.087 . LdBPK_240630.1 642 DRAYVLR|LP 0.091 . LdBPK_240630.1 667 VAPQPSR|RD 0.072 . LdBPK_240630.1 668 APQPSRR|DD 0.253 . LdBPK_240630.1 683 DGEAPLK|LA 0.065 . LdBPK_240630.1 686 APLKLAK|VS 0.059 . LdBPK_240630.1 695 LYGGIIK|SM 0.075 . LdBPK_240630.1 698 GIIKSMK|RM 0.060 . LdBPK_240630.1 699 IIKSMKR|ML 0.221 . LdBPK_240630.1 702 SMKRMLK|DG 0.196 . LdBPK_240630.1 720 TAPQQQR|KS 0.077 . LdBPK_240630.1 721 APQQQRK|SP 0.105 . LdBPK_240630.1 726 RKSPNFR|VG 0.108 . LdBPK_240630.1 729 PNFRVGR|NA 0.436 . LdBPK_240630.1 738 VQALHQR|KV 0.107 . LdBPK_240630.1 739 QALHQRK|VL 0.083 . LdBPK_240630.1 748 NTPETVR|RP 0.065 . LdBPK_240630.1 749 TPETVRR|PA 0.227 . LdBPK_240630.1 755 RPASAPK|FQ 0.081 . LdBPK_240630.1 759 APKFQQR|IR 0.126 . LdBPK_240630.1 761 KFQQRIR|DP 0.119 . LdBPK_240630.1 771 WEMEMDR|GK 0.095 . LdBPK_240630.1 773 MEMDRGK|VK 0.061 . LdBPK_240630.1 775 MDRGKVK|KV 0.096 . LdBPK_240630.1 776 DRGKVKK|VK 0.158 . LdBPK_240630.1 778 GKVKKVK|SK 0.132 . LdBPK_240630.1 780 VKKVKSK|EK 0.069 . LdBPK_240630.1 782 KVKSKEK|AP 0.073 . LdBPK_240630.1 798 PFQEVSR|GM 0.108 . LdBPK_240630.1 804 RGMFDVR|GR 0.079 . LdBPK_240630.1 806 MFDVRGR|RR 0.079 . LdBPK_240630.1 807 FDVRGRR|RR 0.188 . LdBPK_240630.1 808 DVRGRRR|RA 0.150 . LdBPK_240630.1 809 VRGRRRR|A- 0.644 *ProP* ____________________________^_________________

  • Fasta :-

    >LdBPK_240630.1 ATGGACGTCGCACATAATCGATCGCTCGGGTTCGCCGGGAAGGAGATCTTGTTCCGCAAG ATCGAGTTTGAGCGCTATCGGAAACCGCACGTCGTGGAATACCCCCGTAGCGCCGTTGTC CTCAACCCGCAGCACACACGTCAGCTCCGCGATGCGATGTGCACGCAGCGGCAGGGTGTC GAACACAACAGCAGCGACGCAGACGACGGCGACCAGGGGGAGGCGCCCCGCAGATACTCG GACAGCGACGATGACGACGACGATGACCCGCAGCGCGTCGACAAGGCGACACAGCTGTGC TCCGACGCGCAGTTTCGCGGCAGCCTACACTTGTGCTGGCAGGCCATCACACCTGTTGGA CTGGGGCTCATGAATCTTGGCAACACGTGCTTCGCGAACAGCGTGCTGCAAGCACTGGCC CATACCCCGGCGGTGGCACAGTACTTCATGAACACGTTTCGCTCAGCAGACAGCCAGCTT GGTGCCCCCTTCGACTTTGCCTTCGCCCTTGCCGAGACGTTTCGCAAGATGCAGCACGCG CCACAGCAGGGCCGAACCGGCGGCGGCGGTGCGTACCGACCTGGGCAGATCATGAGCAAC CTCCGTCTGCTCTCAAAGCACTTCTCCATTGGGCGGCAGAGCGACGCGCATGAGTTTGCG GTGCAACTTCTCTTTTCGTGTCAGAAATCCCTGCTGCACCGCCTTGTCGGTTCCAAGAAG GTGCACCCACGGGTGGCGCACACCACCGCGCTTCACCGCATCTGCGGCGGCTACCTGCTC TCACAGGTGACGTGGTCGCGCCAGGAAGAGATTCAGCAGTTGCTGCGCGCCGGCAAGCAG CAGGAGGCGATGGATCTCAAGATGGAGGCAAAGCAAGCAGAGGGGAAGCGGGCACAGCGT GCCTCACGGCACGGCCTTGACCCTCAGACCCTGTGCTCCAACACCTACGACCCCTTTACG ATTCTCTCGGTGGAGTTAGCGGGGCACACGCTGCAGCACTGCCTTGACAAGTTCTGCGCG GTCGAGGAACTCGATGGCCGCTCTTACCTGTCCCCACGCCAGGTCGGTGTGCGCGCGAAG AAAAAGCTAAGCATCCACGTCCCGCCGCCCGTGTTCGTCATCCACGTGAAGCGCTTTACC CCCTCCGGCAGCAAAATTAACAAGCACGTGCTGTTCCCGCTAGAGCTGGACATTACCCGC TACTGCACCCTACTGTCGTCGTCGTCATCGCCGCCGCCGCCGCCGAATCACCTGCAGCCG CACAATGGTATGTCCTCCCCAGCGACAACGAAGAGAGCCGATTGCCAGTACGAGCTCAAC GCCGTATGCGTTCACGAGGGACGTTCCATTGACTACGGCCACTACTACACCCTGGCCAAG GCCCCTAATGGCATGTGGTACGAGTTCAACGACAGCCATGTTAGTCGTCTTTCGGAGGAC CAGCTGCAACAGGCACAGGTGTACATGCTCTTCTACTCCCGAAAGCCCACGGTCGCCGCT GAGATGATGCAGCCGCCGCATCAGCAGCAGCACAACATCCGCGGCAGCGCACCGGCCTCT GTGTCTTCCTCCGCCGCCTCCAAGCTCGGCGCGATGACAGCAGTGGAAGAGGACGGCGCT GTTGGGCAAGAGCTGAGCGAGTCGGAGGTGCAGGTACTACTGGAGAAACGCCGCGCTGTG CAACGGCAGGCGGGCAGTTTAAACGGGTGTCGCTCTTCCTCGTCTGCGACGGCTGCAGAG AAGCCGCAACTCCTGTCCAACACTTCTGGCGACAGCGATGACGAGGGTCACGCCGTCGAG CCCACGTCTTTGTCGTCGAGCAAGTCTGCCCGGGCGCAGACCTTCAAGCGCATGCAAGAG GCGCTTCCAACGGACTCGGACAGCAACAGCGACGACGAAAAGCAGGACCGCGCATATGTA CTCCGGCTGCCGGCACAGCTGAACGGATGCACAGTGCAGGACAGCCACATCGAGGCAGAC GTAGCGCCACAACCCTCACGGCGAGATGACGAGCACGACGCACCGGCGGACGGCGAGGCG CCGCTCAAGCTGGCCAAGGTTTCACTGTATGGTGGCATCATTAAGTCGATGAAGCGCATG TTGAAGGACGGCGCCGACGGTGGTGCGTCCACCGACACGACGGCGCCGCAGCAGCAGCGG AAGAGCCCAAACTTTCGGGTTGGCCGGAACGCCGTGCAAGCACTGCATCAGCGCAAGGTG CTCAACACCCCTGAGACGGTGCGACGACCGGCATCTGCACCCAAGTTCCAGCAGCGCATC CGTGATCCCATGTGGGAGATGGAGATGGACCGCGGCAAGGTGAAGAAGGTCAAGTCTAAG GAGAAGGCGCCGGATCCGTTTGAAGGCGTCAACCCCTTCCAGGAAGTGTCGCGAGGCATG TTCGACGTTCGTGGACGGCGGCGTCGGGCGTAG
  • Download Fasta

  • Fasta :-

    MDVAHNRSLGFAGKEILFRKIEFERYRKPHVVEYPRSAVVLNPQHTRQLRDAMCTQRQGV EHNSSDADDGDQGEAPRRYSDSDDDDDDDPQRVDKATQLCSDAQFRGSLHLCWQAITPVG LGLMNLGNTCFANSVLQALAHTPAVAQYFMNTFRSADSQLGAPFDFAFALAETFRKMQHA PQQGRTGGGGAYRPGQIMSNLRLLSKHFSIGRQSDAHEFAVQLLFSCQKSLLHRLVGSKK VHPRVAHTTALHRICGGYLLSQVTWSRQEEIQQLLRAGKQQEAMDLKMEAKQAEGKRAQR ASRHGLDPQTLCSNTYDPFTILSVELAGHTLQHCLDKFCAVEELDGRSYLSPRQVGVRAK KKLSIHVPPPVFVIHVKRFTPSGSKINKHVLFPLELDITRYCTLLSSSSSPPPPPNHLQP HNGMSSPATTKRADCQYELNAVCVHEGRSIDYGHYYTLAKAPNGMWYEFNDSHVSRLSED QLQQAQVYMLFYSRKPTVAAEMMQPPHQQQHNIRGSAPASVSSSAASKLGAMTAVEEDGA VGQELSESEVQVLLEKRRAVQRQAGSLNGCRSSSSATAAEKPQLLSNTSGDSDDEGHAVE PTSLSSSKSARAQTFKRMQEALPTDSDSNSDDEKQDRAYVLRLPAQLNGCTVQDSHIEAD VAPQPSRRDDEHDAPADGEAPLKLAKVSLYGGIIKSMKRMLKDGADGGASTDTTAPQQQR KSPNFRVGRNAVQALHQRKVLNTPETVRRPASAPKFQQRIRDPMWEMEMDRGKVKKVKSK EKAPDPFEGVNPFQEVSRGMFDVRGRRRRA

    No Results
  • title: Active Site
  • coordinates: N125,C130,H454,D471
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_240630.1302 SAQRASRHGL0.992unspLdBPK_240630.1302 SAQRASRHGL0.992unspLdBPK_240630.1302 SAQRASRHGL0.992unspLdBPK_240630.1606 STSLSSSKSA0.993unspLdBPK_240630.1628 STDSDSNSDD0.997unspLdBPK_240630.1655 STVQDSHIEA0.991unspLdBPK_240630.1666 SAPQPSRRDD0.995unspLdBPK_240630.1779 SKKVKSKEKA0.994unspLdBPK_240630.180 SPRRYSDSDD0.998unspLdBPK_240630.182 SRYSDSDDDD0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India