LdBPK_271170.1 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_271170.1OTHER0.9998230.0000120.000164
No Results

  • Fasta :-

    >LdBPK_271170.1 MFKFDYKISYDEFVRTIYHHARQYEIKVSDPYKQCVTVNALITKAKDEESKRNYANAYYY VNKCLLFFDKEENPVDFTQRDPSTKRVFAEALDLEAKLKLKELPIEYKAMIEEIDRREPE RRRIVAQQLESDSGDGDGNKQLSRAVDMHLTRQQQLLSSENSSVDELLQRLRWASVPGTR NITLRTVSNGPPAPPPTYDTVSRPEPSPAPVNPVTGDSHALPASASHRSYTTCILNPSNA SLSVRRRGIVNLGNTCYMNSVLQVLNSTPLGQYFLTDAYVSHLLNTKGKLTRLINSFSFV IRELNRSDCKFSVSASPFKSALGDYYEGFQNSSQQDANEFLRVVLDGIHGALNVNDSNRI EFPEIDNSKGTDDELARRYWGQYYQKNSSVIVDYCAFQERSAIVCPSCCHQSRSFNVSLS IEIPIPRTSSKVSLDDCFAAYCREEILDDSSMYMCPNCHQKVNARKQLLFYSAPPVLFIT LKRFRCYGDFTTASKVNSSVFFSKTLNIASYMCSSFSKTKYHLVGIINHQGNMYGGHYTA DAVGADGVWCHFSDEQVTKAEVADNNLAYILCYVR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_271170.1.fa Sequence name : LdBPK_271170 Sequence length : 575 VALUES OF COMPUTED PARAMETERS Coef20 : 3.459 CoefTot : -0.113 ChDiff : 1 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.935 1.159 -0.007 0.435 MesoH : -0.208 0.232 -0.313 0.189 MuHd_075 : 22.418 15.513 6.024 5.139 MuHd_095 : 35.974 16.065 8.665 7.194 MuHd_100 : 24.937 7.908 5.628 4.288 MuHd_105 : 15.992 7.444 2.872 2.476 Hmax_075 : 15.167 14.233 2.381 5.810 Hmax_095 : 10.150 8.400 1.110 4.813 Hmax_100 : 10.900 7.800 0.851 4.090 Hmax_105 : 0.350 4.700 -2.539 2.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8169 0.1831 DFMC : 0.8111 0.1889
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 575 LdBPK_271170.1 MFKFDYKISYDEFVRTIYHHARQYEIKVSDPYKQCVTVNALITKAKDEESKRNYANAYYYVNKCLLFFDKEENPVDFTQR 80 DPSTKRVFAEALDLEAKLKLKELPIEYKAMIEEIDRREPERRRIVAQQLESDSGDGDGNKQLSRAVDMHLTRQQQLLSSE 160 NSSVDELLQRLRWASVPGTRNITLRTVSNGPPAPPPTYDTVSRPEPSPAPVNPVTGDSHALPASASHRSYTTCILNPSNA 240 SLSVRRRGIVNLGNTCYMNSVLQVLNSTPLGQYFLTDAYVSHLLNTKGKLTRLINSFSFVIRELNRSDCKFSVSASPFKS 320 ALGDYYEGFQNSSQQDANEFLRVVLDGIHGALNVNDSNRIEFPEIDNSKGTDDELARRYWGQYYQKNSSVIVDYCAFQER 400 SAIVCPSCCHQSRSFNVSLSIEIPIPRTSSKVSLDDCFAAYCREEILDDSSMYMCPNCHQKVNARKQLLFYSAPPVLFIT 480 LKRFRCYGDFTTASKVNSSVFFSKTLNIASYMCSSFSKTKYHLVGIINHQGNMYGGHYTADAVGADGVWCHFSDEQVTKA 560 EVADNNLAYILCYVR 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_271170.1 3 ----MFK|FD 0.068 . LdBPK_271170.1 7 MFKFDYK|IS 0.064 . LdBPK_271170.1 15 SYDEFVR|TI 0.083 . LdBPK_271170.1 22 TIYHHAR|QY 0.159 . LdBPK_271170.1 27 ARQYEIK|VS 0.078 . LdBPK_271170.1 33 KVSDPYK|QC 0.075 . LdBPK_271170.1 44 VNALITK|AK 0.065 . LdBPK_271170.1 46 ALITKAK|DE 0.090 . LdBPK_271170.1 51 AKDEESK|RN 0.059 . LdBPK_271170.1 52 KDEESKR|NY 0.142 . LdBPK_271170.1 63 AYYYVNK|CL 0.062 . LdBPK_271170.1 70 CLLFFDK|EE 0.066 . LdBPK_271170.1 80 PVDFTQR|DP 0.112 . LdBPK_271170.1 85 QRDPSTK|RV 0.083 . LdBPK_271170.1 86 RDPSTKR|VF 0.154 . LdBPK_271170.1 97 ALDLEAK|LK 0.061 . LdBPK_271170.1 99 DLEAKLK|LK 0.060 . LdBPK_271170.1 101 EAKLKLK|EL 0.062 . LdBPK_271170.1 108 ELPIEYK|AM 0.062 . LdBPK_271170.1 116 MIEEIDR|RE 0.064 . LdBPK_271170.1 117 IEEIDRR|EP 0.101 . LdBPK_271170.1 121 DRREPER|RR 0.094 . LdBPK_271170.1 122 RREPERR|RI 0.214 . LdBPK_271170.1 123 REPERRR|IV 0.223 . LdBPK_271170.1 140 GDGDGNK|QL 0.079 . LdBPK_271170.1 144 GNKQLSR|AV 0.155 . LdBPK_271170.1 152 VDMHLTR|QQ 0.068 . LdBPK_271170.1 170 VDELLQR|LR 0.077 . LdBPK_271170.1 172 ELLQRLR|WA 0.087 . LdBPK_271170.1 180 ASVPGTR|NI 0.075 . LdBPK_271170.1 185 TRNITLR|TV 0.299 . LdBPK_271170.1 203 TYDTVSR|PE 0.073 . LdBPK_271170.1 228 PASASHR|SY 0.192 . LdBPK_271170.1 245 NASLSVR|RR 0.110 . LdBPK_271170.1 246 ASLSVRR|RG 0.108 . LdBPK_271170.1 247 SLSVRRR|GI 0.277 . LdBPK_271170.1 287 SHLLNTK|GK 0.058 . LdBPK_271170.1 289 LLNTKGK|LT 0.075 . LdBPK_271170.1 292 TKGKLTR|LI 0.089 . LdBPK_271170.1 302 SFSFVIR|EL 0.110 . LdBPK_271170.1 306 VIRELNR|SD 0.104 . LdBPK_271170.1 310 LNRSDCK|FS 0.066 . LdBPK_271170.1 319 VSASPFK|SA 0.082 . LdBPK_271170.1 342 DANEFLR|VV 0.148 . LdBPK_271170.1 359 NVNDSNR|IE 0.105 . LdBPK_271170.1 369 PEIDNSK|GT 0.075 . LdBPK_271170.1 377 TDDELAR|RY 0.089 . LdBPK_271170.1 378 DDELARR|YW 0.160 . LdBPK_271170.1 386 WGQYYQK|NS 0.069 . LdBPK_271170.1 400 YCAFQER|SA 0.171 . LdBPK_271170.1 413 SCCHQSR|SF 0.172 . LdBPK_271170.1 427 IEIPIPR|TS 0.086 . LdBPK_271170.1 431 IPRTSSK|VS 0.065 . LdBPK_271170.1 443 CFAAYCR|EE 0.067 . LdBPK_271170.1 461 CPNCHQK|VN 0.070 . LdBPK_271170.1 465 HQKVNAR|KQ 0.074 . LdBPK_271170.1 466 QKVNARK|QL 0.073 . LdBPK_271170.1 482 VLFITLK|RF 0.060 . LdBPK_271170.1 483 LFITLKR|FR 0.204 . LdBPK_271170.1 485 ITLKRFR|CY 0.107 . LdBPK_271170.1 495 DFTTASK|VN 0.060 . LdBPK_271170.1 504 SSVFFSK|TL 0.072 . LdBPK_271170.1 518 MCSSFSK|TK 0.070 . LdBPK_271170.1 520 SSFSKTK|YH 0.070 . LdBPK_271170.1 559 SDEQVTK|AE 0.065 . LdBPK_271170.1 575 YILCYVR|-- 0.069 . ____________________________^_________________

  • Fasta :-

    >LdBPK_271170.1 ATGTTCAAGTTTGACTACAAGATATCCTACGACGAGTTTGTCAGAACAATCTACCATCAT GCACGCCAGTACGAGATAAAAGTTTCCGATCCTTATAAGCAATGCGTCACTGTCAATGCG CTCATCACTAAAGCCAAGGACGAAGAGAGCAAACGAAACTACGCCAATGCGTACTACTAC GTCAACAAGTGCCTTTTATTTTTCGATAAGGAAGAGAACCCGGTTGACTTCACGCAAAGA GATCCATCGACAAAGAGGGTCTTTGCTGAGGCTCTTGACCTCGAGGCTAAGTTGAAGCTG AAGGAACTACCGATCGAGTACAAGGCTATGATCGAAGAAATCGACCGTCGGGAGCCGGAA CGCCGTCGCATCGTAGCCCAGCAGCTGGAGTCGGACAGCGGAGATGGTGACGGGAACAAG CAGCTTTCTAGGGCTGTAGACATGCACTTGACAAGACAGCAGCAACTTCTGTCTTCCGAG AACAGCAGCGTAGATGAGTTGTTGCAGCGACTTCGCTGGGCTTCGGTGCCTGGCACGAGG AACATTACCCTACGCACGGTCTCCAATGGCCCGCCTGCTCCTCCTCCAACGTACGACACC GTCTCCAGACCGGAACCGTCTCCAGCGCCAGTAAATCCCGTGACAGGCGACAGCCACGCT CTCCCTGCCTCAGCCTCACATAGAAGCTATACAACCTGTATCCTGAATCCTTCAAATGCC TCTCTGTCAGTGCGACGGAGGGGAATCGTAAATTTGGGTAACACATGCTACATGAATAGC GTGCTGCAGGTACTCAATTCCACGCCATTAGGCCAGTACTTTCTCACAGACGCCTATGTT TCCCACCTGCTTAATACAAAGGGAAAGCTGACTCGCTTGATCAACTCATTTAGCTTCGTT ATCCGTGAGCTCAATCGTTCCGACTGCAAGTTTTCAGTGAGCGCGTCTCCGTTCAAGTCT GCTCTCGGAGACTACTACGAGGGGTTTCAAAACTCAAGCCAGCAGGATGCAAACGAGTTT CTACGTGTTGTGCTGGATGGCATTCACGGAGCACTGAATGTGAACGACAGTAATAGAATT GAGTTTCCTGAGATTGACAACTCTAAAGGCACCGATGACGAACTTGCTCGACGCTACTGG GGGCAGTACTATCAGAAGAATTCGTCCGTTATAGTTGACTACTGCGCGTTTCAAGAGCGA AGCGCGATTGTCTGCCCCTCCTGTTGCCACCAGTCACGTTCTTTCAATGTTTCTCTTAGC ATTGAAATTCCTATTCCGCGGACCTCGTCAAAGGTTTCACTCGACGACTGCTTTGCCGCT TACTGCCGGGAAGAAATTCTTGACGATAGCTCGATGTACATGTGCCCTAACTGTCACCAG AAGGTGAACGCCCGAAAGCAACTGCTGTTTTATTCAGCACCACCAGTTCTATTTATTACT CTGAAGCGTTTCCGCTGTTACGGTGACTTCACCACCGCCTCAAAAGTCAACTCGAGCGTT TTCTTTAGTAAAACACTGAACATTGCCTCGTATATGTGCTCCAGCTTCTCGAAAACAAAG TACCATTTGGTGGGTATTATCAATCACCAAGGCAACATGTATGGAGGTCACTATACTGCA GATGCTGTTGGTGCTGATGGTGTGTGGTGCCACTTCAGCGATGAGCAGGTGACAAAAGCG GAAGTGGCAGATAATAATCTTGCCTATATTCTCTGCTACGTACGTTGA
  • Download Fasta

  • Fasta :-

    MFKFDYKISYDEFVRTIYHHARQYEIKVSDPYKQCVTVNALITKAKDEESKRNYANAYYY VNKCLLFFDKEENPVDFTQRDPSTKRVFAEALDLEAKLKLKELPIEYKAMIEEIDRREPE RRRIVAQQLESDSGDGDGNKQLSRAVDMHLTRQQQLLSSENSSVDELLQRLRWASVPGTR NITLRTVSNGPPAPPPTYDTVSRPEPSPAPVNPVTGDSHALPASASHRSYTTCILNPSNA SLSVRRRGIVNLGNTCYMNSVLQVLNSTPLGQYFLTDAYVSHLLNTKGKLTRLINSFSFV IRELNRSDCKFSVSASPFKSALGDYYEGFQNSSQQDANEFLRVVLDGIHGALNVNDSNRI EFPEIDNSKGTDDELARRYWGQYYQKNSSVIVDYCAFQERSAIVCPSCCHQSRSFNVSLS IEIPIPRTSSKVSLDDCFAAYCREEILDDSSMYMCPNCHQKVNARKQLLFYSAPPVLFIT LKRFRCYGDFTTASKVNSSVFFSKTLNIASYMCSSFSKTKYHLVGIINHQGNMYGGHYTA DAVGADGVWCHFSDEQVTKAEVADNNLAYILCYVR

  • title: Active Site
  • coordinates: N251,C256,H537,D554
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_271170.1429 SIPRTSSKVS0.995unspLdBPK_271170.1429 SIPRTSSKVS0.995unspLdBPK_271170.1429 SIPRTSSKVS0.995unspLdBPK_271170.1433 SSSKVSLDDC0.995unspLdBPK_271170.183 SQRDPSTKRV0.998unspLdBPK_271170.1163 SSENSSVDEL0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India