LdBPK_271770.1 | trypanothione synthetase

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_271770.1OTHER0.9352440.0019290.062827
No Results

  • Fasta :-

    >LdBPK_271770.1 MSSLPRASVSFNRPGHIPFGAVQGYAPGGVPAYSNKHDHYFSGERSIEGNIFFGFKYQCV EFARRWLLVRKGLVLPDVNWACHIFQLKEVRDAATAESFAVLPVRNGTGTKPEADALLVY PSTATNPVGHVGAITEVGDDYVCVADQNYRFHKWESSYAYKLKLDHRDGIWTIIDDIDAD EIEIPLGWVTFPGRANRPEGAPPVALHPSLHFNKPPKPYLLRRNFLPTESKANWLDMNNP AERLFVEEFGMDVSRTRLEEKAVSYYESNHEFHLRCIAYGTQLHDIFMEATAQVIESDEK LRLFAIPEEFWPRIRHSWKYQQTYISGRFDFAFNNETGEVKCFEYNADSASTLLECGRIQ QKWAESVGLDKQGTRGSGFAVERNLKMAWANSGATGRVHFCVDEEKEEQYTALYCMQAAE AAGLEGKLCVLFDEFRFDDNGHVVDSDGVRVRNVWKTWMWESAITDYYAAREERGENWKP SPKEKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTDEL RKHGYAKKPIVGRVGSNVTITSGDGEVHAESGGNYGKRNMIYQQLFELKKQDDYYAIIGG WMIGDAFSGTGIREDKSVITGVDSPFAAIRIKTDKLPHPVTHKDIDEMVEDE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_271770.1.fa Sequence name : LdBPK_271770 Sequence length : 652 VALUES OF COMPUTED PARAMETERS Coef20 : 3.827 CoefTot : -2.327 ChDiff : -22 ZoneTo : 37 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.306 1.082 0.141 0.633 MesoH : -0.736 0.235 -0.403 0.193 MuHd_075 : 18.268 12.420 4.036 4.226 MuHd_095 : 26.074 14.519 5.765 5.890 MuHd_100 : 30.267 14.556 7.414 6.833 MuHd_105 : 34.352 16.367 8.779 7.923 Hmax_075 : 8.283 15.517 0.812 3.760 Hmax_095 : 12.075 8.000 1.100 4.078 Hmax_100 : 13.000 8.300 1.432 4.540 Hmax_105 : 14.200 11.600 1.589 5.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4136 0.5864 DFMC : 0.3867 0.6133 This protein is probably imported in mitochondria. f(Ser) = 0.1351 f(Arg) = 0.0541 CMi = 0.92764 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 652 LdBPK_271770.1 MSSLPRASVSFNRPGHIPFGAVQGYAPGGVPAYSNKHDHYFSGERSIEGNIFFGFKYQCVEFARRWLLVRKGLVLPDVNW 80 ACHIFQLKEVRDAATAESFAVLPVRNGTGTKPEADALLVYPSTATNPVGHVGAITEVGDDYVCVADQNYRFHKWESSYAY 160 KLKLDHRDGIWTIIDDIDADEIEIPLGWVTFPGRANRPEGAPPVALHPSLHFNKPPKPYLLRRNFLPTESKANWLDMNNP 240 AERLFVEEFGMDVSRTRLEEKAVSYYESNHEFHLRCIAYGTQLHDIFMEATAQVIESDEKLRLFAIPEEFWPRIRHSWKY 320 QQTYISGRFDFAFNNETGEVKCFEYNADSASTLLECGRIQQKWAESVGLDKQGTRGSGFAVERNLKMAWANSGATGRVHF 400 CVDEEKEEQYTALYCMQAAEAAGLEGKLCVLFDEFRFDDNGHVVDSDGVRVRNVWKTWMWESAITDYYAAREERGENWKP 480 SPKEKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTDELRKHGYAKKPIVGRVGSNVTI 560 TSGDGEVHAESGGNYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIREDKSVITGVDSPFAAIRIKTDKLPHPV 640 THKDIDEMVEDE 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_271770.1 6 -MSSLPR|AS 0.082 . LdBPK_271770.1 13 ASVSFNR|PG 0.092 . LdBPK_271770.1 36 VPAYSNK|HD 0.070 . LdBPK_271770.1 45 HYFSGER|SI 0.129 . LdBPK_271770.1 56 NIFFGFK|YQ 0.062 . LdBPK_271770.1 64 QCVEFAR|RW 0.084 . LdBPK_271770.1 65 CVEFARR|WL 0.090 . LdBPK_271770.1 70 RRWLLVR|KG 0.072 . LdBPK_271770.1 71 RWLLVRK|GL 0.069 . LdBPK_271770.1 88 CHIFQLK|EV 0.081 . LdBPK_271770.1 91 FQLKEVR|DA 0.127 . LdBPK_271770.1 105 FAVLPVR|NG 0.076 . LdBPK_271770.1 111 RNGTGTK|PE 0.064 . LdBPK_271770.1 150 VADQNYR|FH 0.072 . LdBPK_271770.1 153 QNYRFHK|WE 0.136 . LdBPK_271770.1 161 ESSYAYK|LK 0.081 . LdBPK_271770.1 163 SYAYKLK|LD 0.075 . LdBPK_271770.1 167 KLKLDHR|DG 0.089 . LdBPK_271770.1 194 WVTFPGR|AN 0.087 . LdBPK_271770.1 197 FPGRANR|PE 0.278 . LdBPK_271770.1 214 PSLHFNK|PP 0.061 . LdBPK_271770.1 217 HFNKPPK|PY 0.066 . LdBPK_271770.1 222 PKPYLLR|RN 0.068 . LdBPK_271770.1 223 KPYLLRR|NF 0.154 . LdBPK_271770.1 231 FLPTESK|AN 0.057 . LdBPK_271770.1 243 MNNPAER|LF 0.095 . LdBPK_271770.1 255 FGMDVSR|TR 0.073 . LdBPK_271770.1 257 MDVSRTR|LE 0.088 . LdBPK_271770.1 261 RTRLEEK|AV 0.103 . LdBPK_271770.1 275 NHEFHLR|CI 0.108 . LdBPK_271770.1 300 VIESDEK|LR 0.054 . LdBPK_271770.1 302 ESDEKLR|LF 0.078 . LdBPK_271770.1 313 PEEFWPR|IR 0.078 . LdBPK_271770.1 315 EFWPRIR|HS 0.097 . LdBPK_271770.1 319 RIRHSWK|YQ 0.091 . LdBPK_271770.1 328 QTYISGR|FD 0.100 . LdBPK_271770.1 341 NETGEVK|CF 0.060 . LdBPK_271770.1 358 TLLECGR|IQ 0.079 . LdBPK_271770.1 362 CGRIQQK|WA 0.080 . LdBPK_271770.1 371 ESVGLDK|QG 0.059 . LdBPK_271770.1 375 LDKQGTR|GS 0.096 . LdBPK_271770.1 383 SGFAVER|NL 0.087 . LdBPK_271770.1 386 AVERNLK|MA 0.115 . LdBPK_271770.1 397 NSGATGR|VH 0.084 . LdBPK_271770.1 406 FCVDEEK|EE 0.052 . LdBPK_271770.1 427 AAGLEGK|LC 0.053 . LdBPK_271770.1 436 VLFDEFR|FD 0.088 . LdBPK_271770.1 450 VDSDGVR|VR 0.077 . LdBPK_271770.1 452 SDGVRVR|NV 0.170 . LdBPK_271770.1 456 RVRNVWK|TW 0.068 . LdBPK_271770.1 471 TDYYAAR|EE 0.093 . LdBPK_271770.1 474 YAAREER|GE 0.226 . LdBPK_271770.1 479 ERGENWK|PS 0.065 . LdBPK_271770.1 483 NWKPSPK|EK 0.057 . LdBPK_271770.1 485 KPSPKEK|VR 0.067 . LdBPK_271770.1 487 SPKEKVR|LC 0.099 . LdBPK_271770.1 507 YFEPMWK|VI 0.055 . LdBPK_271770.1 513 KVIPSNK|AI 0.069 . LdBPK_271770.1 531 EHPAILK|AE 0.057 . LdBPK_271770.1 541 ELTDELR|KH 0.082 . LdBPK_271770.1 542 LTDELRK|HG 0.073 . LdBPK_271770.1 547 RKHGYAK|KP 0.082 . LdBPK_271770.1 548 KHGYAKK|PI 0.098 . LdBPK_271770.1 553 KKPIVGR|VG 0.099 . LdBPK_271770.1 577 SGGNYGK|RN 0.064 . LdBPK_271770.1 578 GGNYGKR|NM 0.206 . LdBPK_271770.1 589 QQLFELK|KQ 0.063 . LdBPK_271770.1 590 QLFELKK|QD 0.081 . LdBPK_271770.1 613 FSGTGIR|ED 0.079 . LdBPK_271770.1 616 TGIREDK|SV 0.466 . LdBPK_271770.1 630 SPFAAIR|IK 0.132 . LdBPK_271770.1 632 FAAIRIK|TD 0.055 . LdBPK_271770.1 635 IRIKTDK|LP 0.074 . LdBPK_271770.1 643 PHPVTHK|DI 0.080 . ____________________________^_________________

  • Fasta :-

    >LdBPK_271770.1 ATGTCGTCTCTGCCGCGCGCGTCTGTGAGCTTTAATAGGCCGGGCCACATTCCGTTTGGT GCTGTGCAGGGATACGCCCCGGGCGGCGTCCCAGCGTACAGCAACAAGCACGATCACTAC TTCTCCGGCGAGCGCAGCATTGAGGGCAACATCTTCTTCGGCTTCAAGTACCAGTGCGTC GAGTTTGCGCGCCGCTGGCTGCTGGTGCGTAAGGGGCTGGTGCTGCCCGACGTGAACTGG GCCTGCCACATTTTCCAATTGAAGGAGGTGCGAGACGCCGCCACGGCGGAGAGCTTCGCG GTATTGCCAGTGCGCAACGGTACTGGGACGAAGCCGGAAGCCGACGCGCTTCTTGTCTAC CCCTCCACCGCTACAAATCCAGTTGGCCACGTCGGCGCCATCACCGAGGTGGGCGACGAC TACGTATGTGTCGCGGATCAGAACTACCGCTTCCACAAGTGGGAGTCCTCCTACGCGTAC AAGCTGAAGCTTGATCACAGGGACGGCATCTGGACCATCATCGATGACATTGACGCGGAC GAAATCGAGATCCCGCTTGGGTGGGTGACGTTTCCTGGTCGCGCGAACCGGCCGGAAGGG GCGCCGCCGGTGGCGCTGCATCCGTCACTGCACTTCAATAAGCCACCGAAGCCATATCTG CTGCGCCGTAACTTTCTGCCCACGGAGTCCAAGGCGAACTGGCTTGACATGAACAACCCG GCGGAGCGGCTATTCGTGGAGGAGTTTGGCATGGACGTCAGTCGCACCCGCCTGGAGGAG AAGGCCGTCAGCTACTACGAGTCAAATCACGAGTTTCACCTGCGGTGCATCGCGTACGGA ACGCAGCTGCACGACATCTTCATGGAGGCAACCGCGCAGGTGATCGAGAGCGATGAGAAG CTCCGGCTCTTTGCCATTCCTGAGGAGTTTTGGCCCCGCATTCGCCACTCGTGGAAGTAC CAGCAGACGTACATTTCTGGTCGCTTCGACTTCGCCTTCAACAACGAGACGGGCGAGGTC AAGTGCTTCGAGTACAATGCCGACAGCGCGTCGACGCTTCTAGAGTGCGGCCGCATTCAG CAAAAGTGGGCCGAGTCGGTGGGGTTGGACAAGCAGGGCACTCGCGGCTCCGGCTTCGCG GTGGAGCGCAACCTCAAGATGGCGTGGGCGAACAGCGGGGCGACTGGCCGCGTTCACTTC TGTGTTGATGAGGAGAAGGAAGAGCAGTACACGGCCCTCTACTGCATGCAGGCCGCTGAG GCGGCCGGGCTGGAGGGCAAGTTGTGCGTCCTGTTCGACGAGTTCCGCTTTGATGATAAT GGCCACGTTGTCGATAGCGACGGCGTGCGCGTGCGCAATGTGTGGAAGACGTGGATGTGG GAGTCGGCCATCACGGACTATTACGCCGCCCGGGAGGAGCGGGGCGAGAACTGGAAGCCG TCCCCGAAGGAAAAGGTGCGCCTATGCGACTTGCTCCTCGGCGATGACTGGGAAATTCTC TACTTCGAGCCGATGTGGAAAGTCATCCCGAGCAACAAGGCCATCCTGCCCATGATCTAC CACAACCACCCCGAACACCCCGCCATCTTGAAGGCGGAGTACGAGTTGACGGACGAGCTG CGCAAGCACGGGTACGCCAAGAAGCCGATTGTCGGCCGCGTGGGCAGCAACGTGACCATC ACCTCCGGCGACGGCGAGGTGCACGCTGAGTCTGGTGGCAACTATGGGAAGCGCAACATG ATTTACCAACAGCTGTTTGAGTTGAAGAAGCAGGACGACTACTACGCCATCATCGGCGGC TGGATGATCGGCGACGCCTTCAGCGGCACCGGCATCCGCGAGGACAAGTCAGTCATCACC GGCGTAGACAGCCCCTTCGCTGCCATTCGCATCAAGACCGACAAACTTCCGCACCCCGTG ACGCACAAGGATATCGACGAGATGGTCGAGGACGAGTAA
  • Download Fasta

  • Fasta :-

    MSSLPRASVSFNRPGHIPFGAVQGYAPGGVPAYSNKHDHYFSGERSIEGNIFFGFKYQCV EFARRWLLVRKGLVLPDVNWACHIFQLKEVRDAATAESFAVLPVRNGTGTKPEADALLVY PSTATNPVGHVGAITEVGDDYVCVADQNYRFHKWESSYAYKLKLDHRDGIWTIIDDIDAD EIEIPLGWVTFPGRANRPEGAPPVALHPSLHFNKPPKPYLLRRNFLPTESKANWLDMNNP AERLFVEEFGMDVSRTRLEEKAVSYYESNHEFHLRCIAYGTQLHDIFMEATAQVIESDEK LRLFAIPEEFWPRIRHSWKYQQTYISGRFDFAFNNETGEVKCFEYNADSASTLLECGRIQ QKWAESVGLDKQGTRGSGFAVERNLKMAWANSGATGRVHFCVDEEKEEQYTALYCMQAAE AAGLEGKLCVLFDEFRFDDNGHVVDSDGVRVRNVWKTWMWESAITDYYAAREERGENWKP SPKEKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTDEL RKHGYAKKPIVGRVGSNVTITSGDGEVHAESGGNYGKRNMIYQQLFELKKQDDYYAIIGG WMIGDAFSGTGIREDKSVITGVDSPFAAIRIKTDKLPHPVTHKDIDEMVEDE

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_271770.1317 SRIRHSWKYQ0.997unspLdBPK_271770.1317 SRIRHSWKYQ0.997unspLdBPK_271770.1317 SRIRHSWKYQ0.997unspLdBPK_271770.1481 SNWKPSPKEK0.997unspLdBPK_271770.18 SLPRASVSFN0.992unspLdBPK_271770.1264 SEKAVSYYES0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India