LdBPK_283020.1 | beta-lactamase, putative

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

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  • Computed_GO_Process_IDs:        

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_283020.1OTHER0.9999320.0000410.000028
No Results

  • Fasta :-

    >LdBPK_283020.1 MSDAPDAAVTRPRLRIDFPPVKDNEELVDKQRAAVGQDEIRDDMEKDIPPVIRSVLELSH LTMSGHSQWLRAAPGYQGGLFHKGKPFCFASGYRDTSRPLDAEDKGNHMKLKDPLVYGTL SLPVTAAYICELHGKGIFNLEAPLIHYLPELQGKLSEDVTARSVLSFTHGIDDAHLLKDT GARWHRPCFSPSLCAETHARVYEPVNHFLAGGTTPATALTGQQQRANLVQYARSSPRITR NFTRSLHRAYISHTSVALLLAAVETQLKGRSFESDIRTVFFEPAQSHGAGYGAPTLWKDP NELFYQPTGQALQHETFKRPVTIGDPRNCGPAVWNGSLNLYAPVEDYGKLLLLSLDTIMD ARELLGKPSNASGRPYYDFGVQYVPSKDHLQLTKSVLYGIDALPAVASFRYSCEHDLGCF GVASCGSRGARFFVNNLSRIIQHLFVKHVLAKGLDPEKPVNLDDPAQKGKETEETLQRMM KRQKFTSYFTKYEAHRRY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_283020.1.fa Sequence name : LdBPK_283020 Sequence length : 498 VALUES OF COMPUTED PARAMETERS Coef20 : 3.849 CoefTot : 0.112 ChDiff : 4 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.294 0.284 0.552 MesoH : -0.627 0.330 -0.347 0.216 MuHd_075 : 19.403 12.022 4.723 3.901 MuHd_095 : 18.916 8.375 4.464 3.212 MuHd_100 : 21.405 8.814 4.670 2.659 MuHd_105 : 19.866 7.688 3.724 2.157 Hmax_075 : 13.650 12.017 1.755 4.772 Hmax_095 : 11.900 11.000 1.460 4.620 Hmax_100 : 10.900 8.400 1.074 3.820 Hmax_105 : 2.400 9.400 -0.762 2.300 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9044 0.0956 DFMC : 0.8878 0.1122
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 498 LdBPK_283020.1 MSDAPDAAVTRPRLRIDFPPVKDNEELVDKQRAAVGQDEIRDDMEKDIPPVIRSVLELSHLTMSGHSQWLRAAPGYQGGL 80 FHKGKPFCFASGYRDTSRPLDAEDKGNHMKLKDPLVYGTLSLPVTAAYICELHGKGIFNLEAPLIHYLPELQGKLSEDVT 160 ARSVLSFTHGIDDAHLLKDTGARWHRPCFSPSLCAETHARVYEPVNHFLAGGTTPATALTGQQQRANLVQYARSSPRITR 240 NFTRSLHRAYISHTSVALLLAAVETQLKGRSFESDIRTVFFEPAQSHGAGYGAPTLWKDPNELFYQPTGQALQHETFKRP 320 VTIGDPRNCGPAVWNGSLNLYAPVEDYGKLLLLSLDTIMDARELLGKPSNASGRPYYDFGVQYVPSKDHLQLTKSVLYGI 400 DALPAVASFRYSCEHDLGCFGVASCGSRGARFFVNNLSRIIQHLFVKHVLAKGLDPEKPVNLDDPAQKGKETEETLQRMM 480 KRQKFTSYFTKYEAHRRY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_283020.1 11 PDAAVTR|PR 0.075 . LdBPK_283020.1 13 AAVTRPR|LR 0.091 . LdBPK_283020.1 15 VTRPRLR|ID 0.079 . LdBPK_283020.1 22 IDFPPVK|DN 0.070 . LdBPK_283020.1 30 NEELVDK|QR 0.063 . LdBPK_283020.1 32 ELVDKQR|AA 0.105 . LdBPK_283020.1 41 VGQDEIR|DD 0.087 . LdBPK_283020.1 46 IRDDMEK|DI 0.085 . LdBPK_283020.1 53 DIPPVIR|SV 0.152 . LdBPK_283020.1 71 GHSQWLR|AA 0.145 . LdBPK_283020.1 83 QGGLFHK|GK 0.064 . LdBPK_283020.1 85 GLFHKGK|PF 0.071 . LdBPK_283020.1 94 CFASGYR|DT 0.123 . LdBPK_283020.1 98 GYRDTSR|PL 0.115 . LdBPK_283020.1 105 PLDAEDK|GN 0.067 . LdBPK_283020.1 110 DKGNHMK|LK 0.071 . LdBPK_283020.1 112 GNHMKLK|DP 0.087 . LdBPK_283020.1 135 ICELHGK|GI 0.076 . LdBPK_283020.1 154 LPELQGK|LS 0.075 . LdBPK_283020.1 162 SEDVTAR|SV 0.199 . LdBPK_283020.1 178 DDAHLLK|DT 0.079 . LdBPK_283020.1 183 LKDTGAR|WH 0.091 . LdBPK_283020.1 186 TGARWHR|PC 0.171 . LdBPK_283020.1 200 CAETHAR|VY 0.119 . LdBPK_283020.1 225 LTGQQQR|AN 0.084 . LdBPK_283020.1 233 NLVQYAR|SS 0.135 . LdBPK_283020.1 237 YARSSPR|IT 0.100 . LdBPK_283020.1 240 SSPRITR|NF 0.281 . LdBPK_283020.1 244 ITRNFTR|SL 0.195 . LdBPK_283020.1 248 FTRSLHR|AY 0.082 . LdBPK_283020.1 268 AVETQLK|GR 0.056 . LdBPK_283020.1 270 ETQLKGR|SF 0.162 . LdBPK_283020.1 277 SFESDIR|TV 0.096 . LdBPK_283020.1 298 GAPTLWK|DP 0.065 . LdBPK_283020.1 318 LQHETFK|RP 0.063 . LdBPK_283020.1 319 QHETFKR|PV 0.320 . LdBPK_283020.1 327 VTIGDPR|NC 0.099 . LdBPK_283020.1 349 PVEDYGK|LL 0.057 . LdBPK_283020.1 362 DTIMDAR|EL 0.081 . LdBPK_283020.1 367 ARELLGK|PS 0.069 . LdBPK_283020.1 374 PSNASGR|PY 0.132 . LdBPK_283020.1 387 VQYVPSK|DH 0.068 . LdBPK_283020.1 394 DHLQLTK|SV 0.096 . LdBPK_283020.1 410 PAVASFR|YS 0.099 . LdBPK_283020.1 428 VASCGSR|GA 0.108 . LdBPK_283020.1 431 CGSRGAR|FF 0.364 . LdBPK_283020.1 439 FVNNLSR|II 0.090 . LdBPK_283020.1 447 IQHLFVK|HV 0.088 . LdBPK_283020.1 452 VKHVLAK|GL 0.098 . LdBPK_283020.1 458 KGLDPEK|PV 0.066 . LdBPK_283020.1 468 LDDPAQK|GK 0.077 . LdBPK_283020.1 470 DPAQKGK|ET 0.085 . LdBPK_283020.1 478 TEETLQR|MM 0.090 . LdBPK_283020.1 481 TLQRMMK|RQ 0.091 . LdBPK_283020.1 482 LQRMMKR|QK 0.285 . LdBPK_283020.1 484 RMMKRQK|FT 0.082 . LdBPK_283020.1 491 FTSYFTK|YE 0.071 . LdBPK_283020.1 496 TKYEAHR|RY 0.091 . LdBPK_283020.1 497 KYEAHRR|Y- 0.154 . ____________________________^_________________

  • Fasta :-

    >LdBPK_283020.1 ATGTCCGACGCGCCCGACGCTGCAGTCACCAGGCCACGGCTGCGCATCGACTTTCCTCCC GTCAAGGACAATGAGGAACTCGTCGATAAGCAACGCGCCGCCGTTGGTCAGGACGAAATT CGTGACGACATGGAGAAAGACATCCCACCAGTGATCCGTAGTGTGTTGGAGCTGTCGCAT CTGACCATGAGCGGTCACAGCCAGTGGCTGCGTGCTGCACCTGGCTACCAGGGTGGTCTC TTCCACAAGGGCAAGCCCTTCTGCTTTGCCAGTGGATACCGAGACACTAGCCGTCCACTC GATGCCGAAGATAAGGGTAACCACATGAAACTCAAGGACCCGCTCGTGTACGGCACCTTA TCGCTGCCAGTAACGGCTGCCTACATATGCGAGCTGCACGGTAAGGGCATCTTCAACCTG GAAGCGCCTCTGATCCACTACCTACCAGAGCTCCAGGGTAAGCTCAGCGAGGACGTCACC GCCCGCAGCGTGCTCTCCTTCACCCATGGCATCGACGACGCACATCTGCTCAAGGATACG GGAGCACGCTGGCATCGGCCGTGCTTCTCTCCGTCGCTGTGCGCCGAAACGCACGCTCGC GTGTACGAGCCAGTGAATCACTTTCTTGCCGGTGGCACGACGCCCGCAACGGCGCTGACG GGGCAGCAGCAGCGAGCGAACCTCGTCCAGTACGCCCGTTCCTCACCTCGCATCACTCGC AACTTTACGCGATCGCTTCACCGAGCCTACATCAGCCACACCTCCGTGGCCCTGCTGCTG GCTGCGGTGGAGACGCAGCTGAAGGGCCGCAGTTTCGAGAGCGACATCCGCACCGTCTTC TTTGAGCCCGCGCAGAGCCATGGGGCCGGCTATGGCGCACCAACGTTGTGGAAGGACCCG AACGAGCTCTTCTACCAACCCACAGGTCAGGCTCTGCAACACGAGACCTTCAAGCGGCCG GTGACCATCGGCGACCCGCGCAACTGTGGCCCTGCGGTGTGGAACGGCTCGCTGAACCTC TACGCCCCTGTCGAGGACTACGGCAAGCTTCTGCTGCTCTCGCTCGACACCATAATGGAC GCCCGTGAGCTGCTCGGCAAGCCGTCTAACGCTAGCGGGCGCCCCTACTACGACTTTGGG GTGCAGTACGTGCCATCCAAAGACCATCTGCAGCTGACGAAGTCAGTCTTGTACGGCATC GATGCCCTCCCTGCCGTCGCGTCCTTCCGCTACAGCTGCGAGCACGACCTCGGCTGCTTC GGCGTCGCCTCCTGCGGCAGCCGCGGCGCTCGTTTCTTTGTGAACAACCTCTCCCGCATC ATTCAGCACCTGTTCGTGAAGCACGTGCTGGCCAAAGGGCTCGACCCTGAGAAACCCGTC AACCTCGACGACCCCGCGCAGAAAGGCAAGGAGACCGAGGAGACGCTCCAGCGGATGATG AAGCGGCAGAAATTTACGAGCTACTTCACGAAGTACGAGGCGCACAGGCGGTACTGA
  • Download Fasta

  • Fasta :-

    MSDAPDAAVTRPRLRIDFPPVKDNEELVDKQRAAVGQDEIRDDMEKDIPPVIRSVLELSH LTMSGHSQWLRAAPGYQGGLFHKGKPFCFASGYRDTSRPLDAEDKGNHMKLKDPLVYGTL SLPVTAAYICELHGKGIFNLEAPLIHYLPELQGKLSEDVTARSVLSFTHGIDDAHLLKDT GARWHRPCFSPSLCAETHARVYEPVNHFLAGGTTPATALTGQQQRANLVQYARSSPRITR NFTRSLHRAYISHTSVALLLAAVETQLKGRSFESDIRTVFFEPAQSHGAGYGAPTLWKDP NELFYQPTGQALQHETFKRPVTIGDPRNCGPAVWNGSLNLYAPVEDYGKLLLLSLDTIMD ARELLGKPSNASGRPYYDFGVQYVPSKDHLQLTKSVLYGIDALPAVASFRYSCEHDLGCF GVASCGSRGARFFVNNLSRIIQHLFVKHVLAKGLDPEKPVNLDDPAQKGKETEETLQRMM KRQKFTSYFTKYEAHRRY

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_283020.196 TGYRDTSRPL0.994unspLdBPK_283020.1235 SYARSSPRIT0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India