LdBPK_292410.1 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_292410.1OTHER0.9980280.0019670.000005
No Results

  • Fasta :-

    >LdBPK_292410.1 MPFPVTQEACPHAWSDSAIVTPFPGKTVHRDECAYCCRTCRQGDGVYVCMACHTGLCCEH LEKHMRVHGAHAMYTTVKKLPAKETDEVKDVNYLGVVAPAEYETAVCCADCQVRFAQVPD LAVEAYSGIINAPEPGAQDSAADGGVGRLQKPQCPHLVCLEQLASPFAVCPPTSDDICSV EMCGCNVNNWMCVTCGAIGCPRPEAGGQGHALQHYELTGHPACVKLGTITAEGADYYCYA CDDDVDDVHFAAHMAHFGIDVQTAKKTAKTMGELEYDYSSQFDFNKITEAGVSLTPSYGP GHTGIENIGNSCYLASVVQCLMSLGPFQRFFFPAKSTPHQAQCTANPYNCHHCQTERVAA GLLSGEFSREGHELTNGICPRLFKKVYAHQHPEFSTGAQQDAQEYLLYLLEEMQRHVQLN SSGSTSADNVQQQIHPSDIMEMVIEQRMQCSKCQRVRYTYETDKCLSLPIPIDPVPASSV AAAASEAEMDAIRPRCSLEDCLQAATSPSGIECRCEACLESAVYYTVTRLASFPDVLPVY IRRTYFDMTTHNTKKMDAYVEVPQKLVLEAYRGTGLQPGEVLMPASSASSARQPRLDAHV AAPQQEVDEVALVSVVSMGIEMDVARYALLQTNMNVERAIDYIFSHPHIADEIKAAPPLH AEEQEQHLAPTQSATSVSAPKPATDGAASYELTAMISHMGASARTGHYVCHIKDAATGKW LLFNDEKVGESQNPPFSLASLYFFQRQA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_292410.1.fa Sequence name : LdBPK_292410 Sequence length : 748 VALUES OF COMPUTED PARAMETERS Coef20 : 3.603 CoefTot : -0.661 ChDiff : -35 ZoneTo : 7 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.424 0.289 0.495 MesoH : -0.135 0.345 -0.158 0.213 MuHd_075 : 20.790 16.838 7.983 4.281 MuHd_095 : 23.438 13.128 7.444 3.273 MuHd_100 : 16.590 8.412 5.834 1.857 MuHd_105 : 9.872 4.841 4.076 0.637 Hmax_075 : 14.117 10.150 2.345 4.538 Hmax_095 : 11.200 7.962 2.226 3.001 Hmax_100 : 10.800 5.800 2.114 2.810 Hmax_105 : 6.900 3.900 0.565 2.205 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9862 0.0138 DFMC : 0.9711 0.0289
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 748 LdBPK_292410.1 MPFPVTQEACPHAWSDSAIVTPFPGKTVHRDECAYCCRTCRQGDGVYVCMACHTGLCCEHLEKHMRVHGAHAMYTTVKKL 80 PAKETDEVKDVNYLGVVAPAEYETAVCCADCQVRFAQVPDLAVEAYSGIINAPEPGAQDSAADGGVGRLQKPQCPHLVCL 160 EQLASPFAVCPPTSDDICSVEMCGCNVNNWMCVTCGAIGCPRPEAGGQGHALQHYELTGHPACVKLGTITAEGADYYCYA 240 CDDDVDDVHFAAHMAHFGIDVQTAKKTAKTMGELEYDYSSQFDFNKITEAGVSLTPSYGPGHTGIENIGNSCYLASVVQC 320 LMSLGPFQRFFFPAKSTPHQAQCTANPYNCHHCQTERVAAGLLSGEFSREGHELTNGICPRLFKKVYAHQHPEFSTGAQQ 400 DAQEYLLYLLEEMQRHVQLNSSGSTSADNVQQQIHPSDIMEMVIEQRMQCSKCQRVRYTYETDKCLSLPIPIDPVPASSV 480 AAAASEAEMDAIRPRCSLEDCLQAATSPSGIECRCEACLESAVYYTVTRLASFPDVLPVYIRRTYFDMTTHNTKKMDAYV 560 EVPQKLVLEAYRGTGLQPGEVLMPASSASSARQPRLDAHVAAPQQEVDEVALVSVVSMGIEMDVARYALLQTNMNVERAI 640 DYIFSHPHIADEIKAAPPLHAEEQEQHLAPTQSATSVSAPKPATDGAASYELTAMISHMGASARTGHYVCHIKDAATGKW 720 LLFNDEKVGESQNPPFSLASLYFFQRQA 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ............................ 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_292410.1 26 VTPFPGK|TV 0.074 . LdBPK_292410.1 30 PGKTVHR|DE 0.107 . LdBPK_292410.1 38 ECAYCCR|TC 0.096 . LdBPK_292410.1 41 YCCRTCR|QG 0.272 . LdBPK_292410.1 63 CCEHLEK|HM 0.062 . LdBPK_292410.1 66 HLEKHMR|VH 0.113 . LdBPK_292410.1 78 AMYTTVK|KL 0.071 . LdBPK_292410.1 79 MYTTVKK|LP 0.089 . LdBPK_292410.1 83 VKKLPAK|ET 0.076 . LdBPK_292410.1 89 KETDEVK|DV 0.079 . LdBPK_292410.1 114 CADCQVR|FA 0.091 . LdBPK_292410.1 148 ADGGVGR|LQ 0.090 . LdBPK_292410.1 151 GVGRLQK|PQ 0.136 . LdBPK_292410.1 202 GAIGCPR|PE 0.096 . LdBPK_292410.1 225 GHPACVK|LG 0.054 . LdBPK_292410.1 265 IDVQTAK|KT 0.067 . LdBPK_292410.1 266 DVQTAKK|TA 0.096 . LdBPK_292410.1 269 TAKKTAK|TM 0.088 . LdBPK_292410.1 286 SQFDFNK|IT 0.083 . LdBPK_292410.1 329 SLGPFQR|FF 0.141 . LdBPK_292410.1 335 RFFFPAK|ST 0.091 . LdBPK_292410.1 357 HHCQTER|VA 0.097 . LdBPK_292410.1 369 LSGEFSR|EG 0.091 . LdBPK_292410.1 381 TNGICPR|LF 0.118 . LdBPK_292410.1 384 ICPRLFK|KV 0.190 . LdBPK_292410.1 385 CPRLFKK|VY 0.115 . LdBPK_292410.1 415 LLEEMQR|HV 0.086 . LdBPK_292410.1 447 EMVIEQR|MQ 0.075 . LdBPK_292410.1 452 QRMQCSK|CQ 0.066 . LdBPK_292410.1 455 QCSKCQR|VR 0.105 . LdBPK_292410.1 457 SKCQRVR|YT 0.111 . LdBPK_292410.1 464 YTYETDK|CL 0.059 . LdBPK_292410.1 493 AEMDAIR|PR 0.079 . LdBPK_292410.1 495 MDAIRPR|CS 0.085 . LdBPK_292410.1 514 PSGIECR|CE 0.090 . LdBPK_292410.1 529 VYYTVTR|LA 0.076 . LdBPK_292410.1 542 VLPVYIR|RT 0.079 . LdBPK_292410.1 543 LPVYIRR|TY 0.145 . LdBPK_292410.1 554 MTTHNTK|KM 0.062 . LdBPK_292410.1 555 TTHNTKK|MD 0.128 . LdBPK_292410.1 565 YVEVPQK|LV 0.073 . LdBPK_292410.1 572 LVLEAYR|GT 0.103 . LdBPK_292410.1 592 SSASSAR|QP 0.101 . LdBPK_292410.1 595 SSARQPR|LD 0.308 . LdBPK_292410.1 626 IEMDVAR|YA 0.134 . LdBPK_292410.1 638 TNMNVER|AI 0.153 . LdBPK_292410.1 654 HIADEIK|AA 0.073 . LdBPK_292410.1 681 TSVSAPK|PA 0.082 . LdBPK_292410.1 704 HMGASAR|TG 0.115 . LdBPK_292410.1 713 HYVCHIK|DA 0.082 . LdBPK_292410.1 719 KDAATGK|WL 0.066 . LdBPK_292410.1 727 LLFNDEK|VG 0.060 . LdBPK_292410.1 746 SLYFFQR|QA 0.120 . ____________________________^_________________

  • Fasta :-

    >LdBPK_292410.1 ATGCCGTTCCCTGTGACGCAGGAGGCGTGTCCTCACGCGTGGAGTGACTCTGCCATAGTG ACCCCGTTCCCCGGAAAGACAGTGCACCGTGACGAGTGTGCGTACTGCTGCCGGACATGC CGTCAAGGCGACGGAGTCTATGTATGTATGGCATGCCACACAGGTCTGTGCTGCGAGCAC CTGGAGAAGCACATGAGGGTGCACGGGGCGCACGCCATGTACACAACCGTCAAGAAGCTC CCCGCAAAGGAAACGGATGAGGTGAAGGATGTGAATTACCTTGGTGTAGTGGCCCCCGCG GAGTATGAGACGGCGGTGTGCTGCGCGGATTGCCAGGTGCGGTTTGCGCAAGTACCGGAC CTGGCTGTCGAGGCGTACAGCGGCATCATCAACGCGCCGGAACCAGGCGCGCAGGATAGC GCAGCTGATGGCGGTGTGGGCCGCCTGCAGAAGCCGCAATGCCCTCATCTGGTGTGCCTC GAACAGCTGGCGAGCCCCTTTGCTGTTTGTCCGCCCACTTCCGACGACATCTGCTCCGTG GAGATGTGCGGATGCAACGTGAACAACTGGATGTGCGTCACGTGCGGTGCAATCGGTTGC CCTCGTCCCGAAGCAGGCGGCCAGGGCCATGCACTACAGCACTATGAGCTGACAGGACAC CCTGCGTGTGTCAAGCTTGGCACCATCACCGCGGAGGGCGCCGACTACTATTGCTACGCC TGCGACGATGACGTTGATGACGTACACTTCGCAGCCCACATGGCACACTTTGGCATTGAC GTACAAACTGCCAAGAAGACTGCCAAGACGATGGGCGAGCTCGAGTACGACTACTCCTCG CAGTTTGACTTCAACAAGATCACGGAGGCGGGCGTGTCCTTGACGCCATCCTACGGTCCA GGCCACACTGGCATCGAGAATATTGGCAACAGCTGCTACCTCGCATCCGTTGTGCAGTGC CTTATGTCGCTGGGCCCGTTCCAGCGCTTCTTCTTTCCGGCCAAGTCGACCCCGCATCAG GCACAGTGCACCGCGAATCCGTACAACTGCCACCACTGCCAGACGGAGCGCGTGGCGGCC GGCTTGCTCTCCGGTGAGTTCAGCCGGGAAGGCCACGAGCTCACCAACGGCATCTGCCCC CGCCTCTTCAAGAAGGTGTACGCCCACCAGCACCCTGAGTTCTCCACTGGCGCCCAGCAG GATGCTCAGGAGTACCTGCTCTACCTGCTGGAAGAGATGCAGCGGCACGTGCAACTCAAC AGCAGCGGCAGCACCAGTGCCGACAATGTGCAGCAGCAGATTCACCCGTCTGATATCATG GAGATGGTGATTGAGCAGCGTATGCAGTGCAGCAAGTGCCAGCGAGTGCGCTACACGTAT GAGACGGACAAATGCCTGTCCTTGCCGATCCCGATCGATCCGGTGCCGGCCTCGTCTGTT GCAGCTGCTGCAAGCGAGGCGGAGATGGACGCGATACGGCCTCGGTGCTCGCTGGAGGAC TGCCTGCAAGCAGCCACCTCGCCGAGCGGCATCGAGTGCCGGTGCGAGGCATGCCTTGAA TCGGCCGTGTACTACACCGTCACCCGCCTCGCCAGCTTCCCAGATGTTCTGCCAGTGTAC ATTCGCCGCACGTACTTCGACATGACTACCCACAACACAAAGAAAATGGATGCATATGTG GAGGTGCCGCAGAAGCTCGTTCTGGAGGCTTACCGCGGCACTGGGCTGCAGCCGGGTGAG GTGCTGATGCCTGCTTCGTCGGCCTCCTCTGCACGACAGCCTAGGCTAGATGCCCACGTG GCCGCTCCGCAGCAGGAAGTAGATGAGGTGGCACTGGTGTCGGTGGTTAGCATGGGGATC GAGATGGACGTCGCGCGCTACGCCCTCTTACAGACGAACATGAACGTTGAGCGCGCCATC GACTACATATTCAGCCATCCGCACATCGCTGACGAGATCAAGGCCGCGCCACCGCTGCAC GCCGAGGAGCAGGAGCAGCATTTGGCGCCAACCCAAAGCGCTACTTCAGTGAGCGCTCCA AAACCGGCTACCGATGGGGCCGCCTCATACGAGCTCACAGCGATGATCAGTCACATGGGC GCGAGTGCACGGACGGGGCATTACGTTTGCCACATCAAGGATGCCGCGACGGGCAAGTGG CTCCTATTCAATGATGAAAAGGTGGGTGAGTCGCAGAACCCGCCCTTCTCCCTGGCGTCG CTGTACTTTTTCCAACGCCAGGCGTAA
  • Download Fasta

  • Fasta :-

    MPFPVTQEACPHAWSDSAIVTPFPGKTVHRDECAYCCRTCRQGDGVYVCMACHTGLCCEH LEKHMRVHGAHAMYTTVKKLPAKETDEVKDVNYLGVVAPAEYETAVCCADCQVRFAQVPD LAVEAYSGIINAPEPGAQDSAADGGVGRLQKPQCPHLVCLEQLASPFAVCPPTSDDICSV EMCGCNVNNWMCVTCGAIGCPRPEAGGQGHALQHYELTGHPACVKLGTITAEGADYYCYA CDDDVDDVHFAAHMAHFGIDVQTAKKTAKTMGELEYDYSSQFDFNKITEAGVSLTPSYGP GHTGIENIGNSCYLASVVQCLMSLGPFQRFFFPAKSTPHQAQCTANPYNCHHCQTERVAA GLLSGEFSREGHELTNGICPRLFKKVYAHQHPEFSTGAQQDAQEYLLYLLEEMQRHVQLN SSGSTSADNVQQQIHPSDIMEMVIEQRMQCSKCQRVRYTYETDKCLSLPIPIDPVPASSV AAAASEAEMDAIRPRCSLEDCLQAATSPSGIECRCEACLESAVYYTVTRLASFPDVLPVY IRRTYFDMTTHNTKKMDAYVEVPQKLVLEAYRGTGLQPGEVLMPASSASSARQPRLDAHV AAPQQEVDEVALVSVVSMGIEMDVARYALLQTNMNVERAIDYIFSHPHIADEIKAAPPLH AEEQEQHLAPTQSATSVSAPKPATDGAASYELTAMISHMGASARTGHYVCHIKDAATGKW LLFNDEKVGESQNPPFSLASLYFFQRQA

  • title: Active Site
  • coordinates: N307,C312,H707,D725
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_292410.1590 SSSASSARQP0.993unspLdBPK_292410.1590 SSSASSARQP0.993unspLdBPK_292410.1590 SSSASSARQP0.993unspLdBPK_292410.1676 SQSATSVSAP0.996unspLdBPK_292410.1689 SDGAASYELT0.993unspLdBPK_292410.1497 SRPRCSLEDC0.996unspLdBPK_292410.1559 YKMDAYVEVP0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India