LdBPK_300400.1 | Alpha/beta hydrolase family, putative

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_300400.1OTHER0.9708810.0099500.019169
No Results

  • Fasta :-

    >LdBPK_300400.1 MISARDAILQLTSGPSLMDSMCNFIIRPPRSTYEVDDLGPNVFRIGDDGTERFVRHDFEL ENMRGLRFQCSWFKTYPARRVPCVVYCHANCGGRYDGLEALFLLREGFSLFCFDFCGSGM SEGEYISLGFYERQDLVAVVEFLTLKSDEVDGVALWGRSMGAVAAIMYASKDPWIRCIVC DSPFASLRLLIDDLVERHGGRTARVLPKILVHGIVERIRKRIMKRAAFDIDDLDAVKYAK ACGVPALLFHGADDDFVSPTHCEMIRDAFPIPCLQQFTPGGHNCDRQEDIHVLIRAFLRL YLIDKPQGAREIQAARELQLANTASPAAVAAAAANKGAISRLSAPAALAPKQLVPPASYG MRCAETALISSSSTSATASSSTTSPSTSASSSTSFDSSLPLPAALSVPLSPENRLVYDCS NSRDSTPPPKAAATLASSLPPSLTPFRSSSGTRAHVSASTATVAGEGHATSGATVPPPSS PAADSTDGLQNCTASP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_300400.1.fa Sequence name : LdBPK_300400 Sequence length : 496 VALUES OF COMPUTED PARAMETERS Coef20 : 4.209 CoefTot : 0.388 ChDiff : -5 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.194 1.371 0.095 0.496 MesoH : 0.423 0.591 -0.110 0.288 MuHd_075 : 28.549 18.135 7.562 5.726 MuHd_095 : 14.651 4.613 3.494 2.314 MuHd_100 : 16.980 7.610 3.377 3.293 MuHd_105 : 17.980 12.199 3.605 4.162 Hmax_075 : 14.900 14.200 2.511 4.737 Hmax_095 : 12.900 11.400 1.694 4.320 Hmax_100 : 15.700 14.100 1.973 5.140 Hmax_105 : 16.900 15.300 2.560 5.500 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9049 0.0951 DFMC : 0.8508 0.1492
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 496 LdBPK_300400.1 MISARDAILQLTSGPSLMDSMCNFIIRPPRSTYEVDDLGPNVFRIGDDGTERFVRHDFELENMRGLRFQCSWFKTYPARR 80 VPCVVYCHANCGGRYDGLEALFLLREGFSLFCFDFCGSGMSEGEYISLGFYERQDLVAVVEFLTLKSDEVDGVALWGRSM 160 GAVAAIMYASKDPWIRCIVCDSPFASLRLLIDDLVERHGGRTARVLPKILVHGIVERIRKRIMKRAAFDIDDLDAVKYAK 240 ACGVPALLFHGADDDFVSPTHCEMIRDAFPIPCLQQFTPGGHNCDRQEDIHVLIRAFLRLYLIDKPQGAREIQAARELQL 320 ANTASPAAVAAAAANKGAISRLSAPAALAPKQLVPPASYGMRCAETALISSSSTSATASSSTTSPSTSASSSTSFDSSLP 400 LPAALSVPLSPENRLVYDCSNSRDSTPPPKAAATLASSLPPSLTPFRSSSGTRAHVSASTATVAGEGHATSGATVPPPSS 480 PAADSTDGLQNCTASP 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_300400.1 5 --MISAR|DA 0.212 . LdBPK_300400.1 27 MCNFIIR|PP 0.081 . LdBPK_300400.1 30 FIIRPPR|ST 0.464 . LdBPK_300400.1 44 LGPNVFR|IG 0.100 . LdBPK_300400.1 52 GDDGTER|FV 0.111 . LdBPK_300400.1 55 GTERFVR|HD 0.290 . LdBPK_300400.1 64 FELENMR|GL 0.082 . LdBPK_300400.1 67 ENMRGLR|FQ 0.262 . LdBPK_300400.1 74 FQCSWFK|TY 0.056 . LdBPK_300400.1 79 FKTYPAR|RV 0.114 . LdBPK_300400.1 80 KTYPARR|VP 0.113 . LdBPK_300400.1 94 HANCGGR|YD 0.092 . LdBPK_300400.1 105 EALFLLR|EG 0.063 . LdBPK_300400.1 133 SLGFYER|QD 0.081 . LdBPK_300400.1 146 VEFLTLK|SD 0.071 . LdBPK_300400.1 158 GVALWGR|SM 0.210 . LdBPK_300400.1 171 AIMYASK|DP 0.061 . LdBPK_300400.1 176 SKDPWIR|CI 0.076 . LdBPK_300400.1 188 SPFASLR|LL 0.100 . LdBPK_300400.1 197 IDDLVER|HG 0.079 . LdBPK_300400.1 201 VERHGGR|TA 0.092 . LdBPK_300400.1 204 HGGRTAR|VL 0.381 . LdBPK_300400.1 208 TARVLPK|IL 0.077 . LdBPK_300400.1 217 VHGIVER|IR 0.078 . LdBPK_300400.1 219 GIVERIR|KR 0.079 . LdBPK_300400.1 220 IVERIRK|RI 0.163 . LdBPK_300400.1 221 VERIRKR|IM 0.153 . LdBPK_300400.1 224 IRKRIMK|RA 0.159 . LdBPK_300400.1 225 RKRIMKR|AA 0.340 . LdBPK_300400.1 237 DDLDAVK|YA 0.062 . LdBPK_300400.1 240 DAVKYAK|AC 0.064 . LdBPK_300400.1 266 THCEMIR|DA 0.140 . LdBPK_300400.1 286 GGHNCDR|QE 0.094 . LdBPK_300400.1 295 DIHVLIR|AF 0.070 . LdBPK_300400.1 299 LIRAFLR|LY 0.081 . LdBPK_300400.1 305 RLYLIDK|PQ 0.071 . LdBPK_300400.1 310 DKPQGAR|EI 0.090 . LdBPK_300400.1 316 REIQAAR|EL 0.087 . LdBPK_300400.1 336 AAAAANK|GA 0.075 . LdBPK_300400.1 341 NKGAISR|LS 0.082 . LdBPK_300400.1 351 PAALAPK|QL 0.058 . LdBPK_300400.1 362 PASYGMR|CA 0.175 . LdBPK_300400.1 414 PLSPENR|LV 0.123 . LdBPK_300400.1 423 YDCSNSR|DS 0.082 . LdBPK_300400.1 430 DSTPPPK|AA 0.067 . LdBPK_300400.1 447 PSLTPFR|SS 0.140 . LdBPK_300400.1 453 RSSSGTR|AH 0.093 . ____________________________^_________________

  • Fasta :-

    >LdBPK_300400.1 ATGATCAGCGCCAGGGACGCCATTCTCCAGCTGACCTCAGGCCCGAGCTTGATGGACAGC ATGTGCAACTTTATTATTCGCCCGCCTCGGTCCACCTACGAGGTTGACGATCTTGGGCCT AACGTGTTCCGCATCGGCGACGATGGCACGGAGCGCTTCGTGCGCCACGACTTTGAGCTG GAAAACATGCGGGGTTTGCGCTTCCAGTGCTCGTGGTTCAAGACCTATCCTGCCCGCCGT GTGCCGTGCGTGGTGTACTGCCACGCGAATTGCGGCGGGCGCTACGACGGCCTCGAGGCT CTCTTTCTGCTGCGGGAAGGCTTCAGCCTCTTCTGCTTCGACTTCTGCGGGAGCGGGATG TCGGAGGGTGAGTACATCTCCCTAGGCTTCTACGAACGCCAGGACCTGGTCGCCGTCGTC GAGTTTCTCACGCTCAAGAGCGACGAGGTGGACGGAGTGGCGCTGTGGGGCCGCAGCATG GGCGCCGTAGCCGCCATCATGTACGCCTCGAAGGATCCGTGGATTCGTTGTATTGTTTGC GATTCGCCATTCGCATCCCTGCGGTTGCTCATCGACGATTTGGTGGAGCGACATGGCGGG CGAACGGCCCGGGTTCTGCCGAAGATTTTGGTGCACGGGATTGTGGAGCGCATCCGTAAG CGCATCATGAAGCGAGCCGCTTTCGACATTGACGACTTGGACGCGGTCAAGTACGCCAAG GCGTGCGGCGTTCCCGCACTGCTGTTCCACGGCGCCGACGACGACTTTGTGTCCCCGACG CACTGTGAGATGATTCGTGACGCCTTCCCCATTCCGTGCCTGCAGCAGTTCACGCCAGGC GGGCACAACTGCGACCGCCAAGAGGACATTCACGTACTCATCAGGGCCTTTTTGCGGCTC TACCTGATCGACAAGCCACAAGGAGCACGAGAGATACAGGCAGCGCGTGAGCTCCAGCTG GCCAATACTGCATCACCCGCCGCCGTCGCGGCGGCGGCAGCAAACAAGGGGGCCATCTCG CGGCTGAGTGCGCCTGCTGCTCTAGCTCCGAAGCAGCTCGTACCTCCGGCAAGCTATGGT ATGAGGTGCGCTGAGACGGCACTAATCTCTTCTTCCTCCACGTCGGCGACTGCGTCTTCC TCCACCACCTCTCCGTCCACATCCGCGTCATCATCGACATCGTTCGACTCTTCCCTGCCT TTGCCAGCTGCGCTAAGTGTGCCGCTGTCGCCAGAGAACAGGTTGGTCTACGACTGCTCC AACTCACGAGATTCCACTCCGCCACCAAAGGCAGCGGCGACGCTGGCCAGCTCACTCCCA CCGTCTCTCACGCCTTTCCGCTCGTCCAGTGGAACACGAGCGCACGTCAGCGCTTCCACG GCGACAGTGGCAGGTGAGGGGCACGCGACCAGCGGAGCTACCGTACCGCCGCCCAGCTCT CCGGCCGCAGATTCCACTGACGGCTTGCAGAACTGCACTGCAAGCCCGTAG
  • Download Fasta

  • Fasta :-

    MISARDAILQLTSGPSLMDSMCNFIIRPPRSTYEVDDLGPNVFRIGDDGTERFVRHDFEL ENMRGLRFQCSWFKTYPARRVPCVVYCHANCGGRYDGLEALFLLREGFSLFCFDFCGSGM SEGEYISLGFYERQDLVAVVEFLTLKSDEVDGVALWGRSMGAVAAIMYASKDPWIRCIVC DSPFASLRLLIDDLVERHGGRTARVLPKILVHGIVERIRKRIMKRAAFDIDDLDAVKYAK ACGVPALLFHGADDDFVSPTHCEMIRDAFPIPCLQQFTPGGHNCDRQEDIHVLIRAFLRL YLIDKPQGAREIQAARELQLANTASPAAVAAAAANKGAISRLSAPAALAPKQLVPPASYG MRCAETALISSSSTSATASSSTTSPSTSASSSTSFDSSLPLPAALSVPLSPENRLVYDCS NSRDSTPPPKAAATLASSLPPSLTPFRSSSGTRAHVSASTATVAGEGHATSGATVPPPSS PAADSTDGLQNCTASP

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_300400.1384 SSSTTSPSTS0.99unspLdBPK_300400.1384 SSSTTSPSTS0.99unspLdBPK_300400.1384 SSSTTSPSTS0.99unspLdBPK_300400.1410 SSVPLSPENR0.99unspLdBPK_300400.1425 SNSRDSTPPP0.997unspLdBPK_300400.131 SRPPRSTYEV0.995unspLdBPK_300400.1125 YSEGEYISLG0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India