LdBPK_310150.1 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_310150.1OTHER0.9999710.0000190.000010
No Results

  • Fasta :-

    >LdBPK_310150.1 MAEIKVKWGKENLTMEVDLGSTVGAFKEALKAKTGVPVEKQKLMGLKPSMNKDDATLSAA GLVTGKTVMLIGSAESTAAVPTVQAAVVEANETGGYTATATTSNGLKNIANTCYLNSALQ MMRSIPEIREVLEAYRGDNALLQQLAAVLQLLESTKDAVMPLQFWTTLVQTNPTFGERNE HGGFMQQDSQEVLNMLLQAVNSVLPKKYAHLFEGKLHQTLTCVDDPADKGKESDVPFTML SCNITGEVQTLEAGLEHAFDERFTAPCEALQKDVAQFTRVSKLTEAPEYVFVHMVRFSWR GDIQKKAKILKPITFPFILDTTIISTEALKAAQKPVREGIRERRDKELERRRRPRTEEKP SPVDKPQEEEKVPLALKNESGYYDLCGVISHKGRSADGGHYVYWGKKADKWLVYDDEHVA AVSEEDVKRLRGVGEAHIAYVLLYRSRDPVTRTPVIPL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_310150.1.fa Sequence name : LdBPK_310150 Sequence length : 458 VALUES OF COMPUTED PARAMETERS Coef20 : 3.317 CoefTot : 0.141 ChDiff : -3 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.312 1.412 0.128 0.536 MesoH : 0.083 0.363 -0.220 0.235 MuHd_075 : 13.547 4.080 4.486 2.556 MuHd_095 : 22.646 13.667 5.966 3.987 MuHd_100 : 16.590 9.668 4.482 2.700 MuHd_105 : 7.250 5.661 2.415 0.977 Hmax_075 : 0.933 4.200 -1.758 3.313 Hmax_095 : -2.625 7.087 -2.459 2.450 Hmax_100 : -6.200 6.200 -2.946 2.160 Hmax_105 : -2.300 2.800 -3.102 2.123 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9911 0.0089 DFMC : 0.9894 0.0106
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 458 LdBPK_310150.1 MAEIKVKWGKENLTMEVDLGSTVGAFKEALKAKTGVPVEKQKLMGLKPSMNKDDATLSAAGLVTGKTVMLIGSAESTAAV 80 PTVQAAVVEANETGGYTATATTSNGLKNIANTCYLNSALQMMRSIPEIREVLEAYRGDNALLQQLAAVLQLLESTKDAVM 160 PLQFWTTLVQTNPTFGERNEHGGFMQQDSQEVLNMLLQAVNSVLPKKYAHLFEGKLHQTLTCVDDPADKGKESDVPFTML 240 SCNITGEVQTLEAGLEHAFDERFTAPCEALQKDVAQFTRVSKLTEAPEYVFVHMVRFSWRGDIQKKAKILKPITFPFILD 320 TTIISTEALKAAQKPVREGIRERRDKELERRRRPRTEEKPSPVDKPQEEEKVPLALKNESGYYDLCGVISHKGRSADGGH 400 YVYWGKKADKWLVYDDEHVAAVSEEDVKRLRGVGEAHIAYVLLYRSRDPVTRTPVIPL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................P........................................................ 400 .......................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_310150.1 5 --MAEIK|VK 0.064 . LdBPK_310150.1 7 MAEIKVK|WG 0.074 . LdBPK_310150.1 10 IKVKWGK|EN 0.072 . LdBPK_310150.1 27 STVGAFK|EA 0.066 . LdBPK_310150.1 31 AFKEALK|AK 0.061 . LdBPK_310150.1 33 KEALKAK|TG 0.089 . LdBPK_310150.1 40 TGVPVEK|QK 0.073 . LdBPK_310150.1 42 VPVEKQK|LM 0.070 . LdBPK_310150.1 47 QKLMGLK|PS 0.065 . LdBPK_310150.1 52 LKPSMNK|DD 0.059 . LdBPK_310150.1 66 AGLVTGK|TV 0.070 . LdBPK_310150.1 107 TTSNGLK|NI 0.059 . LdBPK_310150.1 123 SALQMMR|SI 0.126 . LdBPK_310150.1 129 RSIPEIR|EV 0.120 . LdBPK_310150.1 136 EVLEAYR|GD 0.081 . LdBPK_310150.1 156 QLLESTK|DA 0.068 . LdBPK_310150.1 178 NPTFGER|NE 0.098 . LdBPK_310150.1 206 VNSVLPK|KY 0.071 . LdBPK_310150.1 207 NSVLPKK|YA 0.130 . LdBPK_310150.1 215 AHLFEGK|LH 0.056 . LdBPK_310150.1 229 VDDPADK|GK 0.059 . LdBPK_310150.1 231 DPADKGK|ES 0.084 . LdBPK_310150.1 262 EHAFDER|FT 0.106 . LdBPK_310150.1 272 PCEALQK|DV 0.081 . LdBPK_310150.1 279 DVAQFTR|VS 0.077 . LdBPK_310150.1 282 QFTRVSK|LT 0.128 . LdBPK_310150.1 296 VFVHMVR|FS 0.104 . LdBPK_310150.1 300 MVRFSWR|GD 0.124 . LdBPK_310150.1 305 WRGDIQK|KA 0.074 . LdBPK_310150.1 306 RGDIQKK|AK 0.099 . LdBPK_310150.1 308 DIQKKAK|IL 0.082 . LdBPK_310150.1 311 KKAKILK|PI 0.065 . LdBPK_310150.1 330 ISTEALK|AA 0.061 . LdBPK_310150.1 334 ALKAAQK|PV 0.078 . LdBPK_310150.1 337 AAQKPVR|EG 0.093 . LdBPK_310150.1 341 PVREGIR|ER 0.084 . LdBPK_310150.1 343 REGIRER|RD 0.083 . LdBPK_310150.1 344 EGIRERR|DK 0.524 *ProP* LdBPK_310150.1 346 IRERRDK|EL 0.171 . LdBPK_310150.1 350 RDKELER|RR 0.071 . LdBPK_310150.1 351 DKELERR|RR 0.087 . LdBPK_310150.1 352 KELERRR|RP 0.104 . LdBPK_310150.1 353 ELERRRR|PR 0.332 . LdBPK_310150.1 355 ERRRRPR|TE 0.338 . LdBPK_310150.1 359 RPRTEEK|PS 0.068 . LdBPK_310150.1 365 KPSPVDK|PQ 0.082 . LdBPK_310150.1 371 KPQEEEK|VP 0.060 . LdBPK_310150.1 377 KVPLALK|NE 0.055 . LdBPK_310150.1 392 CGVISHK|GR 0.070 . LdBPK_310150.1 394 VISHKGR|SA 0.430 . LdBPK_310150.1 406 HYVYWGK|KA 0.070 . LdBPK_310150.1 407 YVYWGKK|AD 0.075 . LdBPK_310150.1 410 WGKKADK|WL 0.062 . LdBPK_310150.1 428 VSEEDVK|RL 0.063 . LdBPK_310150.1 429 SEEDVKR|LR 0.250 . LdBPK_310150.1 431 EDVKRLR|GV 0.148 . LdBPK_310150.1 445 AYVLLYR|SR 0.131 . LdBPK_310150.1 447 VLLYRSR|DP 0.080 . LdBPK_310150.1 452 SRDPVTR|TP 0.086 . ____________________________^_________________

  • Fasta :-

    >LdBPK_310150.1 ATGGCCGAAATCAAAGTCAAGTGGGGTAAGGAGAACCTCACGATGGAGGTCGACCTGGGA AGTACGGTGGGTGCCTTCAAGGAGGCCCTCAAAGCCAAGACCGGGGTGCCAGTGGAGAAG CAGAAGCTCATGGGCCTAAAGCCCTCCATGAACAAGGATGACGCTACGCTCAGCGCCGCC GGCCTCGTGACAGGCAAGACGGTGATGCTGATTGGGTCAGCGGAGAGCACTGCAGCGGTG CCCACGGTGCAAGCGGCTGTTGTAGAAGCAAATGAGACAGGTGGCTACACCGCGACTGCG ACAACTTCAAATGGCTTAAAGAATATTGCCAACACGTGCTACCTGAACTCGGCTCTGCAG ATGATGCGGAGTATTCCGGAGATTCGGGAAGTGCTCGAGGCGTACCGCGGCGACAACGCA CTTCTGCAGCAGCTTGCTGCCGTTCTACAGTTGCTGGAGAGCACCAAGGATGCTGTGATG CCGCTACAGTTCTGGACGACGCTCGTGCAGACAAATCCAACGTTTGGTGAGCGCAACGAG CACGGCGGCTTCATGCAGCAGGACTCGCAGGAGGTGCTGAACATGCTGCTCCAGGCCGTA AACTCCGTGCTGCCCAAGAAGTACGCGCACCTCTTCGAAGGCAAGCTGCATCAGACTCTC ACCTGCGTCGACGACCCGGCTGACAAGGGCAAGGAGTCCGACGTGCCCTTCACGATGCTC TCCTGCAATATCACTGGAGAGGTGCAGACGCTCGAGGCGGGGCTCGAGCACGCCTTCGAC GAGCGCTTCACCGCACCTTGCGAGGCCCTGCAGAAAGACGTCGCCCAGTTCACTCGCGTT AGCAAACTGACCGAAGCACCGGAATATGTCTTTGTGCACATGGTGCGCTTCTCCTGGCGC GGCGACATTCAAAAGAAGGCGAAGATCCTCAAGCCTATCACGTTCCCCTTCATTCTCGAC ACCACCATCATCTCCACCGAAGCGCTCAAGGCGGCACAGAAGCCGGTGCGCGAGGGTATC CGCGAGCGGCGCGACAAGGAGCTGGAGCGGCGCCGCCGCCCCCGCACAGAGGAGAAGCCG TCGCCAGTGGACAAACCGCAGGAGGAGGAGAAGGTGCCCCTGGCCCTCAAGAATGAGAGC GGCTACTATGACCTGTGCGGCGTCATCTCGCACAAGGGCCGCAGCGCGGACGGCGGCCAC TACGTCTACTGGGGTAAGAAAGCAGACAAGTGGCTCGTCTACGACGACGAGCACGTGGCG GCCGTCTCGGAGGAGGACGTGAAGCGGCTGCGTGGTGTCGGAGAAGCTCACATCGCCTAC GTCCTGCTGTATCGCAGTCGCGACCCCGTCACACGAACTCCGGTTATTCCACTTTAG
  • Download Fasta

  • Fasta :-

    MAEIKVKWGKENLTMEVDLGSTVGAFKEALKAKTGVPVEKQKLMGLKPSMNKDDATLSAA GLVTGKTVMLIGSAESTAAVPTVQAAVVEANETGGYTATATTSNGLKNIANTCYLNSALQ MMRSIPEIREVLEAYRGDNALLQQLAAVLQLLESTKDAVMPLQFWTTLVQTNPTFGERNE HGGFMQQDSQEVLNMLLQAVNSVLPKKYAHLFEGKLHQTLTCVDDPADKGKESDVPFTML SCNITGEVQTLEAGLEHAFDERFTAPCEALQKDVAQFTRVSKLTEAPEYVFVHMVRFSWR GDIQKKAKILKPITFPFILDTTIISTEALKAAQKPVREGIRERRDKELERRRRPRTEEKP SPVDKPQEEEKVPLALKNESGYYDLCGVISHKGRSADGGHYVYWGKKADKWLVYDDEHVA AVSEEDVKRLRGVGEAHIAYVLLYRSRDPVTRTPVIPL

  • title: Active Site
  • coordinates: N108,C113,H400,D416
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_310150.1423 SVAAVSEEDV0.993unspLdBPK_310150.1423 SVAAVSEEDV0.993unspLdBPK_310150.1423 SVAAVSEEDV0.993unspLdBPK_310150.1154 SQLLESTKDA0.997unspLdBPK_310150.1361 SEEKPSPVDK0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India