LdBPK_310430.1 | calpain-like cysteine peptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_310430.1OTHER0.9994510.0004970.000052
No Results

  • Fasta :-

    >LdBPK_310430.1 MSSAQDEFDETTIHPDSLPVPATWRQKTSVFRYCGPSVAGTVSSVIDEGVAYRIMTDGGG WAFYNDTRYYTVHVRYRIAAGSTVTPGHSVTADGKGAQQELSMELGPEETKVLLTGSVVG FENLCKATLLPRRPATTQEDQALCAEPQQYWSVLATSCPDVALPDRRSVSTTHLVARCVA KQIRYVDLHFFPSHASLYRDGQDSFYIPPLHWRLPASYLPGDDGVRREVRLFRGPILHPD GLRSGHLLPNHLLLSVAIGLTCLWPQALRRLFIHPQGAQEGKRDRAVGAYHVRLCTGGWW RLCVLDEFLPASAQCPEFSHCADDLQVLWLPLLEKACAKSLGSYAAMLEVPLEYFVRAFT GGPCEVLREIWPAHEDLRDSTVKAARFFALMKRLLRQRPTDMPSLVCWLQPYFRGTARTQ EIGDRLVVLYEDIGLDPNVATVVLGLETLGDGQCVARLRQTAEKKRSAEWWLDLWRRAGK SWVDEVSDLVFAMEETAGGKLWMALEDLPLYFQGGCVAPLTSDWGTVKVQGEFTQRQPSV VLEVTVTAPTCLLASVTQRDFDDAGLPTQAVKVGSTSIGASQTLAGLSCLLYSKGSGGST HFCGSSGDTPDVFEVAQYPHFAYEREVTAGHLLDPRQGPYYVAPFVHSISSDVAYTITAQ LIGAESVSSATSLVARESSTATVRFMTAKPGTALFQNLTQPILLESSMEVSATAMHYQSH SPRQLRMHCGSGVAVDLVLSGCDVPPPITAAGTE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_310430.1.fa Sequence name : LdBPK_310430 Sequence length : 754 VALUES OF COMPUTED PARAMETERS Coef20 : 3.147 CoefTot : 0.210 ChDiff : -14 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.653 1.794 0.270 0.645 MesoH : 0.118 0.460 -0.151 0.264 MuHd_075 : 25.676 18.709 7.487 5.050 MuHd_095 : 18.690 7.776 4.720 2.534 MuHd_100 : 26.339 10.651 5.228 3.816 MuHd_105 : 31.158 11.988 5.335 4.318 Hmax_075 : 13.600 10.600 1.967 3.910 Hmax_095 : 1.700 1.800 -1.778 2.070 Hmax_100 : 13.700 7.300 0.836 3.580 Hmax_105 : 1.500 2.900 -3.248 2.370 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9884 0.0116 DFMC : 0.9590 0.0410
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 754 LdBPK_310430.1 MSSAQDEFDETTIHPDSLPVPATWRQKTSVFRYCGPSVAGTVSSVIDEGVAYRIMTDGGGWAFYNDTRYYTVHVRYRIAA 80 GSTVTPGHSVTADGKGAQQELSMELGPEETKVLLTGSVVGFENLCKATLLPRRPATTQEDQALCAEPQQYWSVLATSCPD 160 VALPDRRSVSTTHLVARCVAKQIRYVDLHFFPSHASLYRDGQDSFYIPPLHWRLPASYLPGDDGVRREVRLFRGPILHPD 240 GLRSGHLLPNHLLLSVAIGLTCLWPQALRRLFIHPQGAQEGKRDRAVGAYHVRLCTGGWWRLCVLDEFLPASAQCPEFSH 320 CADDLQVLWLPLLEKACAKSLGSYAAMLEVPLEYFVRAFTGGPCEVLREIWPAHEDLRDSTVKAARFFALMKRLLRQRPT 400 DMPSLVCWLQPYFRGTARTQEIGDRLVVLYEDIGLDPNVATVVLGLETLGDGQCVARLRQTAEKKRSAEWWLDLWRRAGK 480 SWVDEVSDLVFAMEETAGGKLWMALEDLPLYFQGGCVAPLTSDWGTVKVQGEFTQRQPSVVLEVTVTAPTCLLASVTQRD 560 FDDAGLPTQAVKVGSTSIGASQTLAGLSCLLYSKGSGGSTHFCGSSGDTPDVFEVAQYPHFAYEREVTAGHLLDPRQGPY 640 YVAPFVHSISSDVAYTITAQLIGAESVSSATSLVARESSTATVRFMTAKPGTALFQNLTQPILLESSMEVSATAMHYQSH 720 SPRQLRMHCGSGVAVDLVLSGCDVPPPITAAGTE 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................................................................P.............. 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 .................................. 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_310430.1 25 PVPATWR|QK 0.079 . LdBPK_310430.1 27 PATWRQK|TS 0.053 . LdBPK_310430.1 32 QKTSVFR|YC 0.136 . LdBPK_310430.1 53 DEGVAYR|IM 0.107 . LdBPK_310430.1 68 AFYNDTR|YY 0.087 . LdBPK_310430.1 75 YYTVHVR|YR 0.098 . LdBPK_310430.1 77 TVHVRYR|IA 0.164 . LdBPK_310430.1 95 SVTADGK|GA 0.082 . LdBPK_310430.1 111 LGPEETK|VL 0.055 . LdBPK_310430.1 126 GFENLCK|AT 0.056 . LdBPK_310430.1 132 KATLLPR|RP 0.069 . LdBPK_310430.1 133 ATLLPRR|PA 0.192 . LdBPK_310430.1 166 DVALPDR|RS 0.067 . LdBPK_310430.1 167 VALPDRR|SV 0.297 . LdBPK_310430.1 177 TTHLVAR|CV 0.269 . LdBPK_310430.1 181 VARCVAK|QI 0.089 . LdBPK_310430.1 184 CVAKQIR|YV 0.171 . LdBPK_310430.1 199 SHASLYR|DG 0.117 . LdBPK_310430.1 213 IPPLHWR|LP 0.085 . LdBPK_310430.1 226 PGDDGVR|RE 0.060 . LdBPK_310430.1 227 GDDGVRR|EV 0.159 . LdBPK_310430.1 230 GVRREVR|LF 0.222 . LdBPK_310430.1 233 REVRLFR|GP 0.217 . LdBPK_310430.1 243 LHPDGLR|SG 0.087 . LdBPK_310430.1 269 LWPQALR|RL 0.072 . LdBPK_310430.1 270 WPQALRR|LF 0.137 . LdBPK_310430.1 282 QGAQEGK|RD 0.070 . LdBPK_310430.1 283 GAQEGKR|DR 0.203 . LdBPK_310430.1 285 QEGKRDR|AV 0.190 . LdBPK_310430.1 293 VGAYHVR|LC 0.087 . LdBPK_310430.1 301 CTGGWWR|LC 0.069 . LdBPK_310430.1 335 WLPLLEK|AC 0.064 . LdBPK_310430.1 339 LEKACAK|SL 0.107 . LdBPK_310430.1 357 PLEYFVR|AF 0.101 . LdBPK_310430.1 368 GPCEVLR|EI 0.117 . LdBPK_310430.1 378 PAHEDLR|DS 0.104 . LdBPK_310430.1 383 LRDSTVK|AA 0.070 . LdBPK_310430.1 386 STVKAAR|FF 0.090 . LdBPK_310430.1 392 RFFALMK|RL 0.062 . LdBPK_310430.1 393 FFALMKR|LL 0.148 . LdBPK_310430.1 396 LMKRLLR|QR 0.147 . LdBPK_310430.1 398 KRLLRQR|PT 0.078 . LdBPK_310430.1 414 WLQPYFR|GT 0.094 . LdBPK_310430.1 418 YFRGTAR|TQ 0.104 . LdBPK_310430.1 425 TQEIGDR|LV 0.107 . LdBPK_310430.1 457 DGQCVAR|LR 0.093 . LdBPK_310430.1 459 QCVARLR|QT 0.094 . LdBPK_310430.1 464 LRQTAEK|KR 0.068 . LdBPK_310430.1 465 RQTAEKK|RS 0.077 . LdBPK_310430.1 466 QTAEKKR|SA 0.534 *ProP* LdBPK_310430.1 476 WWLDLWR|RA 0.098 . LdBPK_310430.1 477 WLDLWRR|AG 0.113 . LdBPK_310430.1 480 LWRRAGK|SW 0.275 . LdBPK_310430.1 500 EETAGGK|LW 0.060 . LdBPK_310430.1 528 SDWGTVK|VQ 0.061 . LdBPK_310430.1 536 QGEFTQR|QP 0.096 . LdBPK_310430.1 559 LASVTQR|DF 0.195 . LdBPK_310430.1 572 LPTQAVK|VG 0.066 . LdBPK_310430.1 594 SCLLYSK|GS 0.065 . LdBPK_310430.1 625 PHFAYER|EV 0.114 . LdBPK_310430.1 636 GHLLDPR|QG 0.067 . LdBPK_310430.1 676 ATSLVAR|ES 0.163 . LdBPK_310430.1 684 SSTATVR|FM 0.107 . LdBPK_310430.1 689 VRFMTAK|PG 0.077 . LdBPK_310430.1 723 YQSHSPR|QL 0.139 . LdBPK_310430.1 726 HSPRQLR|MH 0.340 . ____________________________^_________________

  • Fasta :-

    >LdBPK_310430.1 ATGTCGTCGGCCCAGGACGAGTTCGACGAGACCACTATCCACCCCGATTCTCTACCGGTG CCTGCGACATGGAGGCAGAAGACCTCGGTCTTCCGGTACTGCGGACCTTCTGTGGCGGGC ACAGTCTCCTCCGTGATTGATGAGGGGGTGGCGTACCGCATCATGACGGACGGGGGCGGC TGGGCCTTCTACAACGACACTCGATACTACACGGTGCACGTGAGATACCGCATTGCGGCC GGGTCGACGGTGACGCCAGGACACTCCGTAACGGCAGACGGCAAAGGGGCGCAGCAGGAG CTGTCGATGGAACTGGGGCCGGAGGAGACCAAGGTGCTGCTCACGGGCAGCGTGGTGGGC TTTGAGAACCTCTGCAAGGCGACGCTGCTTCCGAGGCGTCCAGCGACGACCCAAGAGGAT CAGGCACTGTGCGCAGAGCCGCAGCAGTACTGGAGCGTTCTCGCCACCTCGTGCCCGGAT GTCGCGTTGCCGGACCGCCGTAGCGTGTCGACGACGCACCTCGTCGCCCGATGCGTGGCG AAGCAGATTCGGTATGTCGACCTGCATTTCTTCCCCAGCCACGCCTCCCTCTACCGCGAC GGCCAGGACAGCTTTTATATACCTCCTCTGCACTGGCGCCTGCCTGCGAGCTACCTCCCC GGGGACGACGGCGTCCGTCGCGAGGTGCGTCTCTTTCGCGGCCCCATCCTTCACCCCGAC GGTTTGCGCTCTGGGCACCTGCTCCCCAACCACCTGCTGCTCTCTGTCGCAATCGGGCTT ACGTGCCTCTGGCCGCAGGCGCTGCGCCGCCTCTTCATTCACCCGCAGGGGGCACAGGAG GGCAAGCGCGACCGGGCTGTCGGGGCCTATCACGTGAGGCTGTGCACAGGGGGCTGGTGG CGGCTCTGTGTCTTGGACGAGTTCCTTCCTGCGTCTGCACAGTGCCCCGAGTTCAGCCAC TGTGCTGACGACCTGCAGGTGCTGTGGCTGCCTTTGCTGGAGAAGGCGTGCGCAAAGTCG CTCGGCTCCTACGCTGCAATGCTGGAGGTGCCGCTGGAATACTTCGTCCGCGCGTTCACC GGAGGGCCTTGCGAAGTGCTGCGCGAGATCTGGCCAGCACACGAGGACTTGCGGGACTCT ACCGTCAAGGCAGCTCGTTTCTTCGCGCTCATGAAGAGGCTGCTGCGGCAACGACCGACG GACATGCCGAGCTTGGTGTGTTGGCTGCAACCCTACTTTCGCGGCACCGCCCGCACACAG GAGATAGGTGATCGGCTGGTGGTGCTGTACGAGGATATCGGACTCGACCCTAATGTCGCC ACCGTGGTGCTAGGGCTTGAGACGCTCGGCGATGGGCAGTGCGTCGCGCGTCTGCGTCAG ACGGCCGAGAAGAAGAGGTCGGCGGAGTGGTGGCTTGACCTTTGGCGCCGCGCCGGAAAG TCGTGGGTGGACGAGGTGAGCGATCTCGTGTTCGCCATGGAGGAGACGGCGGGGGGCAAG TTGTGGATGGCGCTGGAGGACTTACCGCTGTACTTCCAAGGCGGTTGTGTGGCACCACTG ACGAGCGACTGGGGTACGGTGAAGGTGCAGGGTGAGTTTACGCAGCGCCAGCCGTCTGTG GTGCTGGAGGTGACAGTGACAGCACCGACGTGCCTCTTGGCGAGCGTTACGCAGAGGGAC TTCGATGATGCTGGTTTGCCGACGCAAGCAGTGAAGGTTGGCAGTACCTCAATCGGTGCA AGCCAAACATTAGCGGGGCTGAGCTGCCTGCTGTACTCCAAGGGAAGCGGCGGCAGCACT CACTTTTGTGGCAGCAGCGGCGACACCCCTGACGTTTTTGAGGTTGCCCAATACCCGCAT TTTGCGTACGAGCGAGAGGTGACTGCCGGGCATCTGCTAGACCCGCGTCAGGGCCCCTAC TATGTTGCGCCGTTTGTGCACTCCATTTCCTCGGATGTGGCGTACACCATAACAGCCCAA CTAATCGGGGCCGAATCGGTGTCCTCTGCGACTTCACTGGTAGCTCGTGAGAGCAGCACG GCGACAGTGCGCTTCATGACGGCGAAACCAGGGACCGCTCTCTTTCAGAATCTTACTCAG CCGATCCTCCTTGAGTCCTCGATGGAGGTGAGCGCAACAGCCATGCACTACCAAAGTCAC TCACCAAGGCAACTGCGCATGCACTGCGGCTCGGGAGTGGCCGTCGACCTCGTGCTCAGC GGCTGCGATGTGCCACCGCCAATAACAGCAGCAGGCACCGAATGA
  • Download Fasta

  • Fasta :-

    MSSAQDEFDETTIHPDSLPVPATWRQKTSVFRYCGPSVAGTVSSVIDEGVAYRIMTDGGG WAFYNDTRYYTVHVRYRIAAGSTVTPGHSVTADGKGAQQELSMELGPEETKVLLTGSVVG FENLCKATLLPRRPATTQEDQALCAEPQQYWSVLATSCPDVALPDRRSVSTTHLVARCVA KQIRYVDLHFFPSHASLYRDGQDSFYIPPLHWRLPASYLPGDDGVRREVRLFRGPILHPD GLRSGHLLPNHLLLSVAIGLTCLWPQALRRLFIHPQGAQEGKRDRAVGAYHVRLCTGGWW RLCVLDEFLPASAQCPEFSHCADDLQVLWLPLLEKACAKSLGSYAAMLEVPLEYFVRAFT GGPCEVLREIWPAHEDLRDSTVKAARFFALMKRLLRQRPTDMPSLVCWLQPYFRGTARTQ EIGDRLVVLYEDIGLDPNVATVVLGLETLGDGQCVARLRQTAEKKRSAEWWLDLWRRAGK SWVDEVSDLVFAMEETAGGKLWMALEDLPLYFQGGCVAPLTSDWGTVKVQGEFTQRQPSV VLEVTVTAPTCLLASVTQRDFDDAGLPTQAVKVGSTSIGASQTLAGLSCLLYSKGSGGST HFCGSSGDTPDVFEVAQYPHFAYEREVTAGHLLDPRQGPYYVAPFVHSISSDVAYTITAQ LIGAESVSSATSLVARESSTATVRFMTAKPGTALFQNLTQPILLESSMEVSATAMHYQSH SPRQLRMHCGSGVAVDLVLSGCDVPPPITAAGTE

  • title: catalytic site
  • coordinates: H251,V439,S467
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_310430.1481 SRAGKSWVDE0.997unspLdBPK_310430.1605 SHFCGSSGDT0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India