LdBPK_310450.1 | cytoskeleton-associated protein CAP5.5, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_310450.1OTHER0.9999850.0000040.000011
No Results

  • Fasta :-

    >LdBPK_310450.1 MGCCNSKETKKPKEVKVPQAEAQSAKVSSETASVEEQRKIEFRVASAVEDLRAERIEAIC AHSRACPYRYNACTVVGGEVKFYFEGGIIFCIVKEGSWYVYNDSLDYEAHVTVRFGQGSN IVAGERAELEEVEDGWTCAHAVVYPLETVHLVSGTANGYRTSITIKPLDGQYRHDACAAA NGTAEAETEAVRSLVTEGMDEEAILHRCMETGTPYVDLKFPPNGEAVARAGRDTRTIPEM AMMRPTQYLSDNNRLSVNDICGPVLALSIEPGNLGDSWFMCAVAIMAENEAAVRNIFAQG SPAEKAVGAYRVLVNKNGWWHTLIMDDYLPTFNRMPVFARSYDNPAEMWTSLLQKAYAKL HGSYAAITGGDALQALADLSGSPMCRFDKEWEEATTDAGKAGTLANALVQFSRSGACVVL STPGHNSESYLGRSQASDAAAFRAHYKKVGLHLGYTYSLERVVMVEECNTLLFKVRNPWR SSNKWTGAWSYGSRQWDENRDACLLCGAQKDPQDGSFWMCWDDATRYFDGGGVLFANPDA TDYRVKGVFCKTIPSAVLEITASESTRVLFTLSQPDKRGVDRKEGAALFAPIMLTVSKAE GGVQRVQKNTSWNPTMPSEEFNFVVGRDVSMWFTLEAEEKYQLVPRMHLKGVRSNYDRPY VISIMSADKLEGNVRVEAKRIDSSSKVFTNYIAYSSEELPSAEVESQVRLPGKAPVTYVS TTVI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_310450.1.fa Sequence name : LdBPK_310450 Sequence length : 724 VALUES OF COMPUTED PARAMETERS Coef20 : 3.151 CoefTot : -0.385 ChDiff : -15 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.947 1.247 0.052 0.558 MesoH : -0.441 0.371 -0.348 0.259 MuHd_075 : 3.376 1.582 3.971 1.003 MuHd_095 : 7.088 3.465 1.665 0.863 MuHd_100 : 9.770 3.443 1.135 1.723 MuHd_105 : 13.949 2.804 1.818 2.879 Hmax_075 : -9.400 -0.500 -1.639 -0.320 Hmax_095 : -11.900 -3.700 -4.552 -0.870 Hmax_100 : -9.400 -2.000 -3.507 0.030 Hmax_105 : -5.000 -2.450 -3.947 0.770 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9930 0.0070 DFMC : 0.9857 0.0143
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 724 LdBPK_310450.1 MGCCNSKETKKPKEVKVPQAEAQSAKVSSETASVEEQRKIEFRVASAVEDLRAERIEAICAHSRACPYRYNACTVVGGEV 80 KFYFEGGIIFCIVKEGSWYVYNDSLDYEAHVTVRFGQGSNIVAGERAELEEVEDGWTCAHAVVYPLETVHLVSGTANGYR 160 TSITIKPLDGQYRHDACAAANGTAEAETEAVRSLVTEGMDEEAILHRCMETGTPYVDLKFPPNGEAVARAGRDTRTIPEM 240 AMMRPTQYLSDNNRLSVNDICGPVLALSIEPGNLGDSWFMCAVAIMAENEAAVRNIFAQGSPAEKAVGAYRVLVNKNGWW 320 HTLIMDDYLPTFNRMPVFARSYDNPAEMWTSLLQKAYAKLHGSYAAITGGDALQALADLSGSPMCRFDKEWEEATTDAGK 400 AGTLANALVQFSRSGACVVLSTPGHNSESYLGRSQASDAAAFRAHYKKVGLHLGYTYSLERVVMVEECNTLLFKVRNPWR 480 SSNKWTGAWSYGSRQWDENRDACLLCGAQKDPQDGSFWMCWDDATRYFDGGGVLFANPDATDYRVKGVFCKTIPSAVLEI 560 TASESTRVLFTLSQPDKRGVDRKEGAALFAPIMLTVSKAEGGVQRVQKNTSWNPTMPSEEFNFVVGRDVSMWFTLEAEEK 640 YQLVPRMHLKGVRSNYDRPYVISIMSADKLEGNVRVEAKRIDSSSKVFTNYIAYSSEELPSAEVESQVRLPGKAPVTYVS 720 TTVI 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 .... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_310450.1 7 MGCCNSK|ET 0.058 . LdBPK_310450.1 10 CNSKETK|KP 0.065 . LdBPK_310450.1 11 NSKETKK|PK 0.117 . LdBPK_310450.1 13 KETKKPK|EV 0.086 . LdBPK_310450.1 16 KKPKEVK|VP 0.064 . LdBPK_310450.1 26 AEAQSAK|VS 0.070 . LdBPK_310450.1 38 ASVEEQR|KI 0.098 . LdBPK_310450.1 39 SVEEQRK|IE 0.076 . LdBPK_310450.1 43 QRKIEFR|VA 0.197 . LdBPK_310450.1 52 SAVEDLR|AE 0.072 . LdBPK_310450.1 55 EDLRAER|IE 0.132 . LdBPK_310450.1 64 AICAHSR|AC 0.075 . LdBPK_310450.1 69 SRACPYR|YN 0.145 . LdBPK_310450.1 81 VVGGEVK|FY 0.070 . LdBPK_310450.1 94 IIFCIVK|EG 0.058 . LdBPK_310450.1 114 EAHVTVR|FG 0.102 . LdBPK_310450.1 126 NIVAGER|AE 0.069 . LdBPK_310450.1 160 GTANGYR|TS 0.087 . LdBPK_310450.1 166 RTSITIK|PL 0.086 . LdBPK_310450.1 173 PLDGQYR|HD 0.084 . LdBPK_310450.1 192 AETEAVR|SL 0.115 . LdBPK_310450.1 207 EEAILHR|CM 0.111 . LdBPK_310450.1 219 TPYVDLK|FP 0.076 . LdBPK_310450.1 229 NGEAVAR|AG 0.108 . LdBPK_310450.1 232 AVARAGR|DT 0.426 . LdBPK_310450.1 235 RAGRDTR|TI 0.250 . LdBPK_310450.1 244 PEMAMMR|PT 0.076 . LdBPK_310450.1 254 YLSDNNR|LS 0.082 . LdBPK_310450.1 294 ENEAAVR|NI 0.089 . LdBPK_310450.1 305 QGSPAEK|AV 0.103 . LdBPK_310450.1 311 KAVGAYR|VL 0.081 . LdBPK_310450.1 316 YRVLVNK|NG 0.062 . LdBPK_310450.1 334 YLPTFNR|MP 0.070 . LdBPK_310450.1 340 RMPVFAR|SY 0.163 . LdBPK_310450.1 355 WTSLLQK|AY 0.070 . LdBPK_310450.1 359 LQKAYAK|LH 0.064 . LdBPK_310450.1 386 SGSPMCR|FD 0.133 . LdBPK_310450.1 389 PMCRFDK|EW 0.162 . LdBPK_310450.1 400 ATTDAGK|AG 0.057 . LdBPK_310450.1 413 ALVQFSR|SG 0.112 . LdBPK_310450.1 433 SESYLGR|SQ 0.151 . LdBPK_310450.1 443 SDAAAFR|AH 0.104 . LdBPK_310450.1 447 AFRAHYK|KV 0.100 . LdBPK_310450.1 448 FRAHYKK|VG 0.099 . LdBPK_310450.1 461 YTYSLER|VV 0.096 . LdBPK_310450.1 474 CNTLLFK|VR 0.055 . LdBPK_310450.1 476 TLLFKVR|NP 0.081 . LdBPK_310450.1 480 KVRNPWR|SS 0.166 . LdBPK_310450.1 484 PWRSSNK|WT 0.080 . LdBPK_310450.1 494 AWSYGSR|QW 0.127 . LdBPK_310450.1 500 RQWDENR|DA 0.111 . LdBPK_310450.1 510 LLCGAQK|DP 0.073 . LdBPK_310450.1 526 CWDDATR|YF 0.103 . LdBPK_310450.1 544 PDATDYR|VK 0.094 . LdBPK_310450.1 546 ATDYRVK|GV 0.074 . LdBPK_310450.1 551 VKGVFCK|TI 0.071 . LdBPK_310450.1 567 TASESTR|VL 0.101 . LdBPK_310450.1 577 TLSQPDK|RG 0.064 . LdBPK_310450.1 578 LSQPDKR|GV 0.491 . LdBPK_310450.1 582 DKRGVDR|KE 0.138 . LdBPK_310450.1 583 KRGVDRK|EG 0.100 . LdBPK_310450.1 598 IMLTVSK|AE 0.073 . LdBPK_310450.1 605 AEGGVQR|VQ 0.072 . LdBPK_310450.1 608 GVQRVQK|NT 0.242 . LdBPK_310450.1 627 FNFVVGR|DV 0.234 . LdBPK_310450.1 640 TLEAEEK|YQ 0.068 . LdBPK_310450.1 646 KYQLVPR|MH 0.104 . LdBPK_310450.1 650 VPRMHLK|GV 0.095 . LdBPK_310450.1 653 MHLKGVR|SN 0.106 . LdBPK_310450.1 658 VRSNYDR|PY 0.116 . LdBPK_310450.1 669 SIMSADK|LE 0.064 . LdBPK_310450.1 675 KLEGNVR|VE 0.076 . LdBPK_310450.1 679 NVRVEAK|RI 0.076 . LdBPK_310450.1 680 VRVEAKR|ID 0.153 . LdBPK_310450.1 686 RIDSSSK|VF 0.061 . LdBPK_310450.1 709 EVESQVR|LP 0.087 . LdBPK_310450.1 713 QVRLPGK|AP 0.069 . ____________________________^_________________

  • Fasta :-

    >LdBPK_310450.1 ATGGGGTGCTGCAACTCGAAGGAGACGAAGAAACCGAAGGAGGTGAAAGTGCCGCAGGCC GAGGCTCAGTCTGCGAAGGTGTCAAGTGAGACGGCGAGTGTGGAAGAGCAGCGCAAGATT GAGTTTAGAGTGGCGAGTGCCGTGGAGGATCTGCGCGCCGAGCGCATTGAAGCCATCTGC GCCCACAGCCGTGCCTGCCCCTACCGCTATAACGCCTGCACTGTAGTGGGCGGAGAAGTG AAGTTCTACTTCGAGGGTGGCATCATTTTCTGCATCGTGAAAGAAGGCTCGTGGTACGTC TACAACGACTCCCTTGACTACGAGGCGCATGTGACCGTTCGCTTCGGCCAGGGATCGAAT ATTGTCGCTGGAGAGCGGGCAGAGCTGGAGGAGGTAGAGGACGGCTGGACGTGCGCACAC GCCGTCGTGTACCCGCTGGAAACGGTGCATTTGGTCTCCGGCACCGCCAACGGATACAGG ACCAGCATCACTATCAAGCCCCTCGATGGACAGTACCGCCACGATGCGTGCGCAGCTGCC AACGGCACTGCGGAGGCGGAGACAGAGGCCGTTCGCTCTCTTGTCACCGAAGGGATGGAC GAGGAGGCGATTCTGCACCGCTGCATGGAGACAGGAACGCCGTACGTCGACCTGAAGTTC CCGCCGAACGGCGAGGCGGTCGCACGCGCCGGCAGGGACACCCGCACCATCCCCGAGATG GCCATGATGCGCCCGACGCAGTACCTGTCGGATAATAACCGCCTTTCGGTGAACGACATT TGCGGGCCAGTGCTGGCCCTGTCCATCGAGCCGGGTAACCTCGGCGACTCGTGGTTTATG TGCGCTGTGGCCATCATGGCGGAGAATGAGGCGGCGGTGCGAAACATTTTTGCACAGGGC TCACCGGCGGAGAAGGCGGTGGGTGCGTACCGCGTGCTGGTCAACAAAAACGGCTGGTGG CACACCCTCATTATGGACGACTACTTGCCCACGTTCAACCGCATGCCCGTGTTTGCGCGC TCGTACGACAATCCTGCGGAGATGTGGACCTCGTTGCTGCAAAAGGCGTATGCGAAGCTG CATGGCTCCTATGCCGCGATCACTGGCGGCGACGCTCTACAGGCTCTCGCCGATTTGAGC GGCTCGCCGATGTGCCGTTTTGACAAGGAGTGGGAGGAGGCAACGACGGACGCGGGAAAG GCGGGCACACTGGCCAATGCGCTGGTGCAGTTTTCCCGCTCTGGCGCCTGTGTTGTGCTC AGCACTCCAGGCCACAATTCAGAGAGCTACCTGGGCCGCAGCCAGGCGAGCGATGCGGCG GCGTTTCGCGCCCACTACAAGAAGGTTGGCTTACATCTCGGCTACACGTACTCTTTAGAG CGCGTTGTGATGGTCGAGGAGTGCAATACCCTGCTGTTCAAGGTGCGCAACCCTTGGCGC TCGTCGAACAAGTGGACTGGAGCATGGAGCTACGGTTCGAGGCAGTGGGATGAGAATCGG GATGCCTGCCTCCTCTGCGGTGCCCAGAAGGACCCGCAGGATGGCAGCTTCTGGATGTGC TGGGATGACGCCACCCGGTACTTCGACGGAGGCGGTGTTCTGTTTGCGAACCCCGACGCA ACAGATTACCGTGTGAAGGGCGTGTTTTGCAAGACGATCCCAAGCGCGGTTCTTGAGATC ACGGCCTCGGAGTCCACCCGGGTGCTCTTCACCCTCTCGCAACCCGACAAGCGCGGCGTG GACCGCAAGGAGGGCGCGGCGCTTTTTGCCCCGATTATGCTCACTGTGTCCAAGGCGGAG GGCGGCGTGCAGCGGGTGCAGAAGAACACCAGCTGGAACCCGACGATGCCCTCTGAGGAG TTCAACTTTGTTGTCGGCCGTGACGTCTCCATGTGGTTCACGCTGGAGGCCGAGGAGAAG TACCAACTCGTGCCACGCATGCACTTAAAGGGCGTCAGGAGCAACTACGATCGACCGTAC GTGATCAGCATAATGTCGGCCGATAAGTTGGAGGGCAACGTGCGGGTGGAAGCGAAACGC ATTGACAGCAGCTCGAAGGTGTTCACGAACTATATCGCCTACAGCTCGGAAGAGCTGCCG TCGGCCGAGGTGGAGAGCCAGGTGCGGCTTCCTGGCAAGGCCCCCGTGACGTACGTGTCC ACCACGGTGATTTGA
  • Download Fasta

  • Fasta :-

    MGCCNSKETKKPKEVKVPQAEAQSAKVSSETASVEEQRKIEFRVASAVEDLRAERIEAIC AHSRACPYRYNACTVVGGEVKFYFEGGIIFCIVKEGSWYVYNDSLDYEAHVTVRFGQGSN IVAGERAELEEVEDGWTCAHAVVYPLETVHLVSGTANGYRTSITIKPLDGQYRHDACAAA NGTAEAETEAVRSLVTEGMDEEAILHRCMETGTPYVDLKFPPNGEAVARAGRDTRTIPEM AMMRPTQYLSDNNRLSVNDICGPVLALSIEPGNLGDSWFMCAVAIMAENEAAVRNIFAQG SPAEKAVGAYRVLVNKNGWWHTLIMDDYLPTFNRMPVFARSYDNPAEMWTSLLQKAYAKL HGSYAAITGGDALQALADLSGSPMCRFDKEWEEATTDAGKAGTLANALVQFSRSGACVVL STPGHNSESYLGRSQASDAAAFRAHYKKVGLHLGYTYSLERVVMVEECNTLLFKVRNPWR SSNKWTGAWSYGSRQWDENRDACLLCGAQKDPQDGSFWMCWDDATRYFDGGGVLFANPDA TDYRVKGVFCKTIPSAVLEITASESTRVLFTLSQPDKRGVDRKEGAALFAPIMLTVSKAE GGVQRVQKNTSWNPTMPSEEFNFVVGRDVSMWFTLEAEEKYQLVPRMHLKGVRSNYDRPY VISIMSADKLEGNVRVEAKRIDSSSKVFTNYIAYSSEELPSAEVESQVRLPGKAPVTYVS TTVI

  • title: catalytic site
  • coordinates: S277,Y455,N477
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_310450.133 SSETASVEEQ0.997unspLdBPK_310450.1256 SNNRLSVNDI0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India