LdBPK_312330.1 | aminopeptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_312330.1OTHER0.9576450.0032610.039095
No Results

  • Fasta :-

    >LdBPK_312330.1 MDPSACIWNPIQCTLQLVFSRPSSGAAIRAGSAYHGTSVIRYRREPYRDTADSAAGAASS CATFSSEGNSEYDDFLRHRRVIAEKNALHLHALTTAGGIYKDAKVLDVQSYQVRCVSASN EAAAAVLKVVSVEQEDAGAASADSSFSGGAAKRKGSSKVRKGGGAAVVEHDAQTSDDSRA PAAVDWGSKLILFEGAGSLPPFSEVDLTTQFVGRVQSFDCGGIYAACGIGSNPGTEDVPL LTHFEVRFARCAFPAPDDPQYRLDWQLKSIQVPSSFRTILTNGEERGRKELAAQQAVQVS FSPCGPLPAYVFSFACFPGLAKPESTSATGDGLEVVEGGVDIPKFAGDIASGVSHTSNVS YTLVPVRVLARRQARIATATLERVLRLTIEAVTALQQLFQCPLPLLQCEHLDVLLGPTMP YISGMEHHCSIILNEAIYQPGKKTAAAGGGSADRTAEVEQTELIVHELAHHWVGNAVGLP FAVKEGICQVIEQCLGDTLLGKPMRTYKADSSGSTKPESSSPCSSTATLPKSAIRASEKG REFTGTSYQHAFRAVKRLVAAHGFDHFAACLRQLMHVHVVVPAIAVEESGGIQVLRCIHA DVASPPYLSTEQFLRTVESAL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_312330.1.fa Sequence name : LdBPK_312330 Sequence length : 621 VALUES OF COMPUTED PARAMETERS Coef20 : 4.039 CoefTot : -0.448 ChDiff : -7 ZoneTo : 44 KR : 5 DE : 1 CleavSite : 45 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.665 1.476 0.344 0.615 MesoH : 0.079 0.523 -0.171 0.306 MuHd_075 : 24.101 16.884 7.269 5.341 MuHd_095 : 24.122 19.920 6.939 7.365 MuHd_100 : 25.936 18.601 7.509 6.036 MuHd_105 : 29.844 20.493 7.698 6.664 Hmax_075 : 14.800 14.400 3.990 4.580 Hmax_095 : 12.700 14.613 3.971 6.081 Hmax_100 : 17.500 17.200 4.221 6.270 Hmax_105 : 16.800 17.400 5.021 5.443 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2763 0.7237 DFMC : 0.3441 0.6559 This protein is probably imported in mitochondria. f(Ser) = 0.1364 f(Arg) = 0.1136 CMi = 0.59524 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 621 LdBPK_312330.1 MDPSACIWNPIQCTLQLVFSRPSSGAAIRAGSAYHGTSVIRYRREPYRDTADSAAGAASSCATFSSEGNSEYDDFLRHRR 80 VIAEKNALHLHALTTAGGIYKDAKVLDVQSYQVRCVSASNEAAAAVLKVVSVEQEDAGAASADSSFSGGAAKRKGSSKVR 160 KGGGAAVVEHDAQTSDDSRAPAAVDWGSKLILFEGAGSLPPFSEVDLTTQFVGRVQSFDCGGIYAACGIGSNPGTEDVPL 240 LTHFEVRFARCAFPAPDDPQYRLDWQLKSIQVPSSFRTILTNGEERGRKELAAQQAVQVSFSPCGPLPAYVFSFACFPGL 320 AKPESTSATGDGLEVVEGGVDIPKFAGDIASGVSHTSNVSYTLVPVRVLARRQARIATATLERVLRLTIEAVTALQQLFQ 400 CPLPLLQCEHLDVLLGPTMPYISGMEHHCSIILNEAIYQPGKKTAAAGGGSADRTAEVEQTELIVHELAHHWVGNAVGLP 480 FAVKEGICQVIEQCLGDTLLGKPMRTYKADSSGSTKPESSSPCSSTATLPKSAIRASEKGREFTGTSYQHAFRAVKRLVA 560 AHGFDHFAACLRQLMHVHVVVPAIAVEESGGIQVLRCIHADVASPPYLSTEQFLRTVESAL 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_312330.1 21 LQLVFSR|PS 0.089 . LdBPK_312330.1 29 SSGAAIR|AG 0.130 . LdBPK_312330.1 41 HGTSVIR|YR 0.078 . LdBPK_312330.1 43 TSVIRYR|RE 0.077 . LdBPK_312330.1 44 SVIRYRR|EP 0.272 . LdBPK_312330.1 48 YRREPYR|DT 0.171 . LdBPK_312330.1 77 EYDDFLR|HR 0.070 . LdBPK_312330.1 79 DDFLRHR|RV 0.116 . LdBPK_312330.1 80 DFLRHRR|VI 0.311 . LdBPK_312330.1 85 RRVIAEK|NA 0.064 . LdBPK_312330.1 101 TAGGIYK|DA 0.081 . LdBPK_312330.1 104 GIYKDAK|VL 0.073 . LdBPK_312330.1 114 VQSYQVR|CV 0.196 . LdBPK_312330.1 128 AAAAVLK|VV 0.084 . LdBPK_312330.1 152 FSGGAAK|RK 0.067 . LdBPK_312330.1 153 SGGAAKR|KG 0.160 . LdBPK_312330.1 154 GGAAKRK|GS 0.163 . LdBPK_312330.1 158 KRKGSSK|VR 0.072 . LdBPK_312330.1 160 KGSSKVR|KG 0.121 . LdBPK_312330.1 161 GSSKVRK|GG 0.221 . LdBPK_312330.1 179 QTSDDSR|AP 0.097 . LdBPK_312330.1 189 AVDWGSK|LI 0.057 . LdBPK_312330.1 214 TTQFVGR|VQ 0.090 . LdBPK_312330.1 247 LTHFEVR|FA 0.176 . LdBPK_312330.1 250 FEVRFAR|CA 0.452 . LdBPK_312330.1 262 PDDPQYR|LD 0.083 . LdBPK_312330.1 268 RLDWQLK|SI 0.071 . LdBPK_312330.1 277 QVPSSFR|TI 0.078 . LdBPK_312330.1 286 LTNGEER|GR 0.080 . LdBPK_312330.1 288 NGEERGR|KE 0.075 . LdBPK_312330.1 289 GEERGRK|EL 0.230 . LdBPK_312330.1 322 CFPGLAK|PE 0.058 . LdBPK_312330.1 344 GGVDIPK|FA 0.098 . LdBPK_312330.1 367 YTLVPVR|VL 0.070 . LdBPK_312330.1 371 PVRVLAR|RQ 0.078 . LdBPK_312330.1 372 VRVLARR|QA 0.201 . LdBPK_312330.1 375 LARRQAR|IA 0.487 . LdBPK_312330.1 383 ATATLER|VL 0.072 . LdBPK_312330.1 386 TLERVLR|LT 0.264 . LdBPK_312330.1 442 AIYQPGK|KT 0.071 . LdBPK_312330.1 443 IYQPGKK|TA 0.135 . LdBPK_312330.1 454 GGGSADR|TA 0.112 . LdBPK_312330.1 484 GLPFAVK|EG 0.057 . LdBPK_312330.1 502 GDTLLGK|PM 0.060 . LdBPK_312330.1 505 LLGKPMR|TY 0.087 . LdBPK_312330.1 508 KPMRTYK|AD 0.184 . LdBPK_312330.1 516 DSSGSTK|PE 0.073 . LdBPK_312330.1 531 STATLPK|SA 0.094 . LdBPK_312330.1 535 LPKSAIR|AS 0.127 . LdBPK_312330.1 539 AIRASEK|GR 0.069 . LdBPK_312330.1 541 RASEKGR|EF 0.120 . LdBPK_312330.1 553 SYQHAFR|AV 0.135 . LdBPK_312330.1 556 HAFRAVK|RL 0.098 . LdBPK_312330.1 557 AFRAVKR|LV 0.325 . LdBPK_312330.1 572 HFAACLR|QL 0.092 . LdBPK_312330.1 596 GGIQVLR|CI 0.118 . LdBPK_312330.1 615 STEQFLR|TV 0.133 . ____________________________^_________________

  • Fasta :-

    >LdBPK_312330.1 ATGGATCCATCAGCGTGCATATGGAACCCTATCCAGTGCACTTTGCAGCTCGTCTTCAGC CGCCCCAGCAGCGGCGCGGCGATTCGAGCTGGCTCCGCCTACCACGGCACGTCCGTCATC CGCTACCGACGCGAGCCGTATCGGGACACAGCAGACAGCGCCGCGGGAGCTGCTAGCTCT TGTGCTACTTTTTCCTCTGAAGGCAACTCCGAGTACGACGACTTCCTGCGGCACCGTCGC GTGATAGCCGAGAAAAACGCCCTGCACCTTCACGCACTCACCACGGCTGGCGGTATATAC AAGGACGCCAAGGTGCTCGATGTCCAGTCCTACCAGGTGAGGTGCGTCTCGGCCTCTAAT GAAGCGGCCGCGGCAGTGCTCAAGGTTGTGTCCGTCGAGCAGGAGGATGCTGGTGCGGCA TCAGCGGACAGCAGCTTCAGCGGTGGAGCTGCGAAAAGGAAGGGAAGCTCCAAGGTTCGG AAAGGGGGCGGCGCGGCTGTTGTGGAACACGATGCGCAGACGTCTGACGACTCGCGCGCA CCCGCCGCAGTGGACTGGGGATCTAAGCTGATCCTATTTGAAGGCGCCGGCAGCTTACCC CCGTTCTCTGAAGTGGATCTGACAACTCAGTTTGTTGGCAGAGTTCAGTCTTTTGACTGT GGCGGCATCTACGCCGCCTGCGGGATCGGTAGCAATCCCGGCACCGAGGATGTACCCCTA CTCACACATTTTGAGGTGCGCTTCGCCCGGTGCGCGTTTCCGGCCCCCGACGACCCGCAG TACCGCCTCGACTGGCAGCTCAAGAGTATCCAGGTGCCTAGTAGCTTTCGCACCATCTTG ACGAACGGCGAGGAGCGCGGCCGCAAGGAACTGGCGGCGCAGCAGGCGGTGCAGGTGAGC TTTTCGCCGTGCGGCCCGCTACCCGCGTACGTCTTCTCGTTTGCGTGCTTCCCAGGCCTT GCTAAGCCGGAGAGCACATCCGCAACTGGCGATGGGCTGGAGGTGGTAGAGGGAGGCGTG GACATCCCGAAGTTTGCCGGTGACATTGCGAGCGGCGTCAGCCACACCAGTAACGTGTCC TACACACTCGTCCCCGTCCGTGTACTGGCGCGACGACAAGCGCGAATCGCTACGGCAACC CTCGAGCGCGTCTTACGCCTCACCATCGAGGCTGTCACAGCGCTCCAGCAGCTCTTTCAG TGCCCGCTACCGCTCCTTCAGTGCGAGCACCTGGACGTCCTTCTTGGTCCAACAATGCCG TATATCTCTGGTATGGAGCACCACTGCTCGATTATTCTCAACGAGGCCATCTACCAGCCA GGCAAGAAAACTGCTGCCGCTGGTGGAGGAAGTGCGGACCGTACCGCCGAGGTGGAACAG ACAGAGCTCATTGTGCACGAGCTGGCACACCACTGGGTAGGAAACGCCGTGGGACTGCCG TTTGCCGTGAAGGAGGGCATCTGCCAGGTGATCGAGCAGTGCCTCGGCGACACGCTACTG GGCAAGCCTATGCGCACGTACAAGGCAGACAGCAGCGGCAGCACAAAGCCGGAGAGCTCG TCGCCCTGCTCCTCGACTGCTACGCTGCCGAAGAGCGCCATTCGGGCCTCTGAGAAAGGC CGCGAGTTCACAGGCACCTCGTACCAGCACGCATTCCGCGCTGTTAAGCGACTGGTCGCC GCTCACGGGTTTGACCACTTTGCCGCGTGCCTGCGACAGCTCATGCACGTGCATGTCGTT GTTCCAGCCATCGCAGTCGAGGAGAGCGGCGGAATTCAGGTGCTGCGGTGCATCCATGCT GACGTCGCCTCTCCTCCGTACCTAAGCACGGAGCAGTTTCTGCGCACCGTGGAGAGCGCG TTGTGA
  • Download Fasta

  • Fasta :-

    MDPSACIWNPIQCTLQLVFSRPSSGAAIRAGSAYHGTSVIRYRREPYRDTADSAAGAASS CATFSSEGNSEYDDFLRHRRVIAEKNALHLHALTTAGGIYKDAKVLDVQSYQVRCVSASN EAAAAVLKVVSVEQEDAGAASADSSFSGGAAKRKGSSKVRKGGGAAVVEHDAQTSDDSRA PAAVDWGSKLILFEGAGSLPPFSEVDLTTQFVGRVQSFDCGGIYAACGIGSNPGTEDVPL LTHFEVRFARCAFPAPDDPQYRLDWQLKSIQVPSSFRTILTNGEERGRKELAAQQAVQVS FSPCGPLPAYVFSFACFPGLAKPESTSATGDGLEVVEGGVDIPKFAGDIASGVSHTSNVS YTLVPVRVLARRQARIATATLERVLRLTIEAVTALQQLFQCPLPLLQCEHLDVLLGPTMP YISGMEHHCSIILNEAIYQPGKKTAAAGGGSADRTAEVEQTELIVHELAHHWVGNAVGLP FAVKEGICQVIEQCLGDTLLGKPMRTYKADSSGSTKPESSSPCSSTATLPKSAIRASEKG REFTGTSYQHAFRAVKRLVAAHGFDHFAACLRQLMHVHVVVPAIAVEESGGIQVLRCIHA DVASPPYLSTEQFLRTVESAL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_312330.1511 SYKADSSGST0.997unspLdBPK_312330.1511 SYKADSSGST0.997unspLdBPK_312330.1511 SYKADSSGST0.997unspLdBPK_312330.1514 SDSSGSTKPE0.99unspLdBPK_312330.1537 SAIRASEKGR0.996unspLdBPK_312330.170 SSEGNSEYDD0.997unspLdBPK_312330.1156 SKRKGSSKVR0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India