LdBPK_321310.1 | ubiquitin hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_321310.1OTHER0.9999960.0000030.000001
No Results

  • Fasta :-

    >LdBPK_321310.1 MGGPPGSQVAQKKPNRPRHKKQEGVSENGASAKGATTLASSNGCGVTAMQAAASPSPFQP PRQPNVYTDCAPLRELYDQVRLSECGLHGSSVRGGAGRPRRREEKGRPFTLQQSFSELPY PRGIMNNSNFCFMNSMLQALMFIPSFAQLTVSVSCDAQARQLCPTLATLGKWTLQYWKPG FTRLAMIAPTLMPRLPAGANNSNSGAPRSAVVPASQRILDGSVQEDAQEFLQKLLERVHE ELVGLEEAFQQADASEAATESEMGLIAPAATTTTASGGGGGGGGRADAPDDATASTFHKK GWTFVKGKEKLAVREHEDVQGQSKLLASIFGGTLESHLQGKQRQRDRVSVLIERYYCLPV DVGFAPECTVEQALERTFMTERIYDSEHEKKLKKTLRLGRLPSVLFLQLRRWAVTREGEL VKLDNVVRIKRTLLIPRTICADETLGNTERAYRLLSVVCHRGDAVSRGHYVTYLVHHAAT PAVLKVQSSEPGNKDTAILRLPPDAATVILCNDANISVCPAKNMEKETMYFLVYQKTS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_321310.1.fa Sequence name : LdBPK_321310 Sequence length : 538 VALUES OF COMPUTED PARAMETERS Coef20 : 2.675 CoefTot : -2.529 ChDiff : 12 ZoneTo : 22 KR : 6 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.729 1.524 0.252 0.551 MesoH : 0.251 0.451 -0.208 0.247 MuHd_075 : 22.340 12.618 5.877 5.540 MuHd_095 : 24.932 15.012 9.037 5.097 MuHd_100 : 22.538 14.499 8.296 5.084 MuHd_105 : 21.306 12.571 7.296 4.316 Hmax_075 : -4.667 -4.550 -4.773 0.910 Hmax_095 : -4.200 -3.100 -3.183 1.060 Hmax_100 : -1.800 -0.700 -1.979 1.780 Hmax_105 : 3.033 -3.600 -1.219 1.493 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9191 0.0809 DFMC : 0.8975 0.1025
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 538 LdBPK_321310.1 MGGPPGSQVAQKKPNRPRHKKQEGVSENGASAKGATTLASSNGCGVTAMQAAASPSPFQPPRQPNVYTDCAPLRELYDQV 80 RLSECGLHGSSVRGGAGRPRRREEKGRPFTLQQSFSELPYPRGIMNNSNFCFMNSMLQALMFIPSFAQLTVSVSCDAQAR 160 QLCPTLATLGKWTLQYWKPGFTRLAMIAPTLMPRLPAGANNSNSGAPRSAVVPASQRILDGSVQEDAQEFLQKLLERVHE 240 ELVGLEEAFQQADASEAATESEMGLIAPAATTTTASGGGGGGGGRADAPDDATASTFHKKGWTFVKGKEKLAVREHEDVQ 320 GQSKLLASIFGGTLESHLQGKQRQRDRVSVLIERYYCLPVDVGFAPECTVEQALERTFMTERIYDSEHEKKLKKTLRLGR 400 LPSVLFLQLRRWAVTREGELVKLDNVVRIKRTLLIPRTICADETLGNTERAYRLLSVVCHRGDAVSRGHYVTYLVHHAAT 480 PAVLKVQSSEPGNKDTAILRLPPDAATVILCNDANISVCPAKNMEKETMYFLVYQKTS 560 ....................P........................................................... 80 ....................P........................................................... 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LdBPK_321310.1 12 GSQVAQK|KP 0.066 . LdBPK_321310.1 13 SQVAQKK|PN 0.110 . LdBPK_321310.1 16 AQKKPNR|PR 0.104 . LdBPK_321310.1 18 KKPNRPR|HK 0.132 . LdBPK_321310.1 20 PNRPRHK|KQ 0.072 . LdBPK_321310.1 21 NRPRHKK|QE 0.555 *ProP* LdBPK_321310.1 33 ENGASAK|GA 0.100 . LdBPK_321310.1 62 SPFQPPR|QP 0.104 . LdBPK_321310.1 74 TDCAPLR|EL 0.114 . LdBPK_321310.1 81 ELYDQVR|LS 0.106 . LdBPK_321310.1 93 LHGSSVR|GG 0.078 . LdBPK_321310.1 98 VRGGAGR|PR 0.105 . LdBPK_321310.1 100 GGAGRPR|RR 0.097 . LdBPK_321310.1 101 GAGRPRR|RE 0.624 *ProP* LdBPK_321310.1 102 AGRPRRR|EE 0.125 . LdBPK_321310.1 105 PRRREEK|GR 0.138 . LdBPK_321310.1 107 RREEKGR|PF 0.122 . LdBPK_321310.1 122 SELPYPR|GI 0.088 . LdBPK_321310.1 160 SCDAQAR|QL 0.124 . LdBPK_321310.1 171 TLATLGK|WT 0.069 . LdBPK_321310.1 178 WTLQYWK|PG 0.060 . LdBPK_321310.1 183 WKPGFTR|LA 0.107 . LdBPK_321310.1 194 APTLMPR|LP 0.074 . LdBPK_321310.1 208 SNSGAPR|SA 0.190 . LdBPK_321310.1 217 VVPASQR|IL 0.084 . LdBPK_321310.1 233 AQEFLQK|LL 0.074 . LdBPK_321310.1 237 LQKLLER|VH 0.082 . LdBPK_321310.1 285 GGGGGGR|AD 0.079 . LdBPK_321310.1 299 TASTFHK|KG 0.075 . LdBPK_321310.1 300 ASTFHKK|GW 0.125 . LdBPK_321310.1 306 KGWTFVK|GK 0.072 . LdBPK_321310.1 308 WTFVKGK|EK 0.072 . LdBPK_321310.1 310 FVKGKEK|LA 0.063 . LdBPK_321310.1 314 KEKLAVR|EH 0.108 . LdBPK_321310.1 324 DVQGQSK|LL 0.066 . LdBPK_321310.1 341 ESHLQGK|QR 0.067 . LdBPK_321310.1 343 HLQGKQR|QR 0.108 . LdBPK_321310.1 345 QGKQRQR|DR 0.095 . LdBPK_321310.1 347 KQRQRDR|VS 0.090 . LdBPK_321310.1 354 VSVLIER|YY 0.072 . LdBPK_321310.1 376 VEQALER|TF 0.078 . LdBPK_321310.1 382 RTFMTER|IY 0.078 . LdBPK_321310.1 390 YDSEHEK|KL 0.073 . LdBPK_321310.1 391 DSEHEKK|LK 0.088 . LdBPK_321310.1 393 EHEKKLK|KT 0.063 . LdBPK_321310.1 394 HEKKLKK|TL 0.090 . LdBPK_321310.1 397 KLKKTLR|LG 0.070 . LdBPK_321310.1 400 KTLRLGR|LP 0.167 . LdBPK_321310.1 410 VLFLQLR|RW 0.078 . LdBPK_321310.1 411 LFLQLRR|WA 0.117 . LdBPK_321310.1 416 RRWAVTR|EG 0.102 . LdBPK_321310.1 422 REGELVK|LD 0.059 . LdBPK_321310.1 428 KLDNVVR|IK 0.078 . LdBPK_321310.1 430 DNVVRIK|RT 0.061 . LdBPK_321310.1 431 NVVRIKR|TL 0.314 . LdBPK_321310.1 437 RTLLIPR|TI 0.091 . LdBPK_321310.1 450 TLGNTER|AY 0.075 . LdBPK_321310.1 453 NTERAYR|LL 0.222 . LdBPK_321310.1 461 LSVVCHR|GD 0.100 . LdBPK_321310.1 467 RGDAVSR|GH 0.080 . LdBPK_321310.1 485 ATPAVLK|VQ 0.058 . LdBPK_321310.1 494 SSEPGNK|DT 0.066 . LdBPK_321310.1 500 KDTAILR|LP 0.070 . LdBPK_321310.1 522 ISVCPAK|NM 0.081 . LdBPK_321310.1 526 PAKNMEK|ET 0.061 . LdBPK_321310.1 536 YFLVYQK|TS 0.056 . ____________________________^_________________

  • Fasta :-

    >LdBPK_321310.1 ATGGGTGGGCCACCGGGGTCACAGGTGGCGCAGAAGAAACCAAACCGACCACGACACAAA AAACAGGAGGGTGTAAGCGAAAATGGTGCCAGCGCCAAGGGAGCAACGACGCTTGCCTCT TCCAATGGATGTGGCGTCACAGCTATGCAGGCTGCTGCGTCGCCGTCGCCGTTTCAGCCA CCACGCCAGCCTAACGTGTACACCGACTGCGCGCCGCTGCGAGAGCTGTACGACCAAGTT CGACTGAGTGAATGCGGCCTCCACGGCAGTAGTGTCAGGGGCGGTGCTGGTCGACCGCGA AGGCGGGAGGAAAAGGGACGCCCCTTCACGCTTCAGCAATCCTTCAGCGAATTGCCGTAC CCGCGTGGGATAATGAACAACAGCAACTTCTGCTTCATGAATTCGATGCTGCAGGCACTC ATGTTCATTCCCTCCTTTGCGCAACTGACCGTCTCCGTCAGCTGTGATGCGCAGGCACGC CAGCTGTGCCCCACGCTGGCGACCCTTGGAAAGTGGACACTTCAGTACTGGAAGCCCGGT TTCACGCGGCTAGCGATGATAGCCCCAACGTTGATGCCGCGCTTGCCTGCTGGTGCCAAC AACAGTAACAGCGGCGCTCCTCGGTCGGCCGTGGTGCCCGCCTCGCAGCGGATCCTTGAC GGCTCTGTGCAGGAGGACGCGCAGGAGTTTCTGCAGAAGTTGCTAGAGCGTGTGCATGAA GAGCTGGTGGGTCTCGAGGAAGCTTTTCAGCAGGCCGACGCGTCTGAAGCGGCGACGGAG AGCGAAATGGGGTTGATTGCCCCTGCTGCCACCACCACCACCGCCAGTGGCGGTGGTGGT GGTGGTGGTGGCCGCGCCGATGCTCCGGACGACGCGACCGCCTCGACCTTCCACAAGAAG GGCTGGACGTTTGTGAAGGGAAAGGAGAAGCTGGCGGTGCGGGAGCACGAGGATGTGCAA GGGCAGTCGAAACTGCTGGCAAGTATCTTTGGTGGAACGCTGGAGAGCCACTTGCAGGGG AAGCAGCGCCAGCGCGACCGCGTGTCAGTGCTCATCGAGAGGTACTACTGTCTCCCCGTC GACGTTGGCTTTGCGCCGGAGTGTACCGTTGAGCAAGCTCTCGAGCGCACCTTCATGACA GAGCGGATCTATGACAGCGAGCATGAGAAAAAACTCAAGAAGACTCTCCGCCTCGGCCGT CTGCCCTCCGTTCTCTTTCTGCAGCTGCGCCGCTGGGCCGTGACGCGCGAGGGCGAGCTC GTGAAGCTCGACAACGTTGTGCGTATCAAGCGCACCTTGCTGATTCCTCGTACCATCTGC GCTGATGAGACACTTGGCAACACCGAGCGAGCGTACCGTCTCCTGTCGGTTGTGTGCCAT CGCGGTGACGCCGTTAGTCGGGGGCACTATGTCACCTACTTAGTGCACCATGCCGCGACC CCAGCCGTCCTGAAGGTGCAGTCGAGTGAGCCGGGCAACAAGGACACTGCAATCCTGCGT TTGCCGCCTGACGCGGCGACAGTGATTCTCTGCAATGACGCCAACATTTCTGTGTGTCCA GCAAAGAACATGGAGAAGGAGACCATGTACTTTCTCGTCTACCAGAAGACAAGCTGA
  • Download Fasta

  • Fasta :-

    MGGPPGSQVAQKKPNRPRHKKQEGVSENGASAKGATTLASSNGCGVTAMQAAASPSPFQP PRQPNVYTDCAPLRELYDQVRLSECGLHGSSVRGGAGRPRRREEKGRPFTLQQSFSELPY PRGIMNNSNFCFMNSMLQALMFIPSFAQLTVSVSCDAQARQLCPTLATLGKWTLQYWKPG FTRLAMIAPTLMPRLPAGANNSNSGAPRSAVVPASQRILDGSVQEDAQEFLQKLLERVHE ELVGLEEAFQQADASEAATESEMGLIAPAATTTTASGGGGGGGGRADAPDDATASTFHKK GWTFVKGKEKLAVREHEDVQGQSKLLASIFGGTLESHLQGKQRQRDRVSVLIERYYCLPV DVGFAPECTVEQALERTFMTERIYDSEHEKKLKKTLRLGRLPSVLFLQLRRWAVTREGEL VKLDNVVRIKRTLLIPRTICADETLGNTERAYRLLSVVCHRGDAVSRGHYVTYLVHHAAT PAVLKVQSSEPGNKDTAILRLPPDAATVILCNDANISVCPAKNMEKETMYFLVYQKTS

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_321310.183 SQVRLSECGL0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India