LdBPK_321370.1 | WLM domain containing protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      GO:0031981      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      nuclear lumen      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

No Results
No Results

  • Fasta :-

    >LdBPK_321370.1 MEHVLHRARVLLPRRGWRIGLIKEFYPRGATLLGLNVNAGSEVCIRFRVPGKKNEFLPFH EVLCTALHEFTHCVHPRHDRAFWNLYYDLVKECEALEITMIQQGMRLYPAISSTPMSCSG TASQQSRSDREGRTAAMVKSARGGGRRLGNGGARGGGRERGGGMSTGSRHVTQTIIMTGR AASSSSSSPTSSAGFPGEGRRLGGGGPRQYDTPIGFTPTRDALRRILADAAQRRLARTLP SAATVTLGSQPLALSLDSGTFPQQDGGQSEVDDGDAPDCVPHTLSGHEDGGGWNCPRCAF RNDDNVVGSCAFCADCDDEDEGEAIWRKRPRLDSDHSPLETPTIAVPSATASKTVPAQQS QQQQVECTAEEHYIVVSDEDDS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_321370.1.fa Sequence name : LdBPK_321370 Sequence length : 382 VALUES OF COMPUTED PARAMETERS Coef20 : 4.343 CoefTot : -1.039 ChDiff : -3 ZoneTo : 41 KR : 7 DE : 2 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.171 1.012 0.128 0.432 MesoH : -0.835 0.050 -0.420 0.114 MuHd_075 : 55.018 24.812 12.626 12.207 MuHd_095 : 42.483 24.726 11.982 8.997 MuHd_100 : 31.158 21.020 9.225 7.176 MuHd_105 : 31.584 17.566 7.529 7.210 Hmax_075 : 17.500 10.237 3.052 5.574 Hmax_095 : 1.900 13.200 0.616 2.540 Hmax_100 : 3.400 17.400 1.079 3.920 Hmax_105 : -1.800 17.700 -1.919 2.340 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1738 0.8262 DFMC : 0.2459 0.7541 This protein is probably imported in mitochondria. f(Ser) = 0.0244 f(Arg) = 0.1463 CMi = 0.08873 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 382 LdBPK_321370.1 MEHVLHRARVLLPRRGWRIGLIKEFYPRGATLLGLNVNAGSEVCIRFRVPGKKNEFLPFHEVLCTALHEFTHCVHPRHDR 80 AFWNLYYDLVKECEALEITMIQQGMRLYPAISSTPMSCSGTASQQSRSDREGRTAAMVKSARGGGRRLGNGGARGGGRER 160 GGGMSTGSRHVTQTIIMTGRAASSSSSSPTSSAGFPGEGRRLGGGGPRQYDTPIGFTPTRDALRRILADAAQRRLARTLP 240 SAATVTLGSQPLALSLDSGTFPQQDGGQSEVDDGDAPDCVPHTLSGHEDGGGWNCPRCAFRNDDNVVGSCAFCADCDDED 320 EGEAIWRKRPRLDSDHSPLETPTIAVPSATASKTVPAQQSQQQQVECTAEEHYIVVSDEDDS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_321370.1 7 MEHVLHR|AR 0.074 . LdBPK_321370.1 9 HVLHRAR|VL 0.077 . LdBPK_321370.1 14 ARVLLPR|RG 0.088 . LdBPK_321370.1 15 RVLLPRR|GW 0.139 . LdBPK_321370.1 18 LPRRGWR|IG 0.255 . LdBPK_321370.1 23 WRIGLIK|EF 0.070 . LdBPK_321370.1 28 IKEFYPR|GA 0.105 . LdBPK_321370.1 46 GSEVCIR|FR 0.095 . LdBPK_321370.1 48 EVCIRFR|VP 0.087 . LdBPK_321370.1 52 RFRVPGK|KN 0.069 . LdBPK_321370.1 53 FRVPGKK|NE 0.088 . LdBPK_321370.1 77 THCVHPR|HD 0.127 . LdBPK_321370.1 80 VHPRHDR|AF 0.202 . LdBPK_321370.1 91 LYYDLVK|EC 0.068 . LdBPK_321370.1 106 MIQQGMR|LY 0.083 . LdBPK_321370.1 127 TASQQSR|SD 0.263 . LdBPK_321370.1 130 QQSRSDR|EG 0.366 . LdBPK_321370.1 133 RSDREGR|TA 0.304 . LdBPK_321370.1 139 RTAAMVK|SA 0.124 . LdBPK_321370.1 142 AMVKSAR|GG 0.117 . LdBPK_321370.1 146 SARGGGR|RL 0.135 . LdBPK_321370.1 147 ARGGGRR|LG 0.132 . LdBPK_321370.1 154 LGNGGAR|GG 0.122 . LdBPK_321370.1 158 GARGGGR|ER 0.129 . LdBPK_321370.1 160 RGGGRER|GG 0.103 . LdBPK_321370.1 169 GMSTGSR|HV 0.158 . LdBPK_321370.1 180 TIIMTGR|AA 0.126 . LdBPK_321370.1 200 GFPGEGR|RL 0.103 . LdBPK_321370.1 201 FPGEGRR|LG 0.174 . LdBPK_321370.1 208 LGGGGPR|QY 0.089 . LdBPK_321370.1 220 IGFTPTR|DA 0.100 . LdBPK_321370.1 224 PTRDALR|RI 0.074 . LdBPK_321370.1 225 TRDALRR|IL 0.169 . LdBPK_321370.1 233 LADAAQR|RL 0.076 . LdBPK_321370.1 234 ADAAQRR|LA 0.205 . LdBPK_321370.1 237 AQRRLAR|TL 0.242 . LdBPK_321370.1 297 GGWNCPR|CA 0.107 . LdBPK_321370.1 301 CPRCAFR|ND 0.116 . LdBPK_321370.1 327 EGEAIWR|KR 0.069 . LdBPK_321370.1 328 GEAIWRK|RP 0.066 . LdBPK_321370.1 329 EAIWRKR|PR 0.189 . LdBPK_321370.1 331 IWRKRPR|LD 0.123 . LdBPK_321370.1 353 PSATASK|TV 0.087 . ____________________________^_________________

  • Fasta :-

    >LdBPK_321370.1 ATGGAACACGTTTTGCATCGTGCCCGTGTGCTGCTCCCGCGTCGCGGCTGGCGCATCGGT CTCATCAAGGAATTCTACCCGCGCGGAGCGACCCTGCTTGGACTCAATGTGAATGCCGGC AGCGAGGTATGCATTCGCTTCCGTGTTCCCGGAAAGAAAAACGAGTTCCTACCATTTCAT GAAGTGCTGTGCACAGCCTTGCACGAGTTCACGCACTGTGTGCACCCGAGGCACGATCGT GCCTTCTGGAACCTCTACTACGATTTGGTCAAGGAGTGCGAGGCGCTGGAAATTACCATG ATCCAGCAGGGCATGCGGCTCTACCCAGCAATCTCCTCCACACCCATGAGCTGCTCCGGC ACTGCGTCTCAGCAAAGCCGCTCTGATCGTGAGGGCAGGACTGCAGCAATGGTCAAGAGC GCTCGAGGTGGAGGCCGCCGCCTCGGTAACGGGGGCGCCAGAGGAGGCGGTAGGGAACGA GGAGGTGGGATGAGCACGGGCAGTCGCCATGTCACACAAACCATCATCATGACGGGTCGC GCCGCCTCCAGCAGCAGCTCCTCGCCGACGAGCAGTGCGGGTTTTCCTGGAGAGGGGCGC CGCCTCGGCGGCGGCGGTCCCCGACAGTACGACACCCCGATCGGCTTCACCCCGACACGG GACGCGCTGCGCCGAATCCTTGCCGACGCGGCACAGAGACGTCTTGCGCGGACGCTGCCG TCAGCAGCAACGGTCACGCTGGGTTCGCAGCCTCTAGCTCTCTCACTTGACAGCGGCACT TTCCCGCAACAAGATGGGGGGCAATCTGAGGTGGATGACGGCGACGCGCCGGACTGCGTC CCGCATACCCTTTCGGGCCACGAGGACGGTGGTGGCTGGAATTGCCCACGTTGCGCTTTC CGCAACGATGATAACGTGGTCGGTAGCTGCGCTTTCTGCGCTGATTGCGATGACGAGGAC GAGGGGGAGGCGATATGGAGAAAGCGGCCTCGACTCGACAGCGATCACTCACCACTAGAA ACGCCCACGATAGCCGTCCCCTCGGCCACCGCGTCGAAGACGGTGCCTGCGCAGCAGTCG CAGCAGCAGCAGGTCGAGTGCACCGCAGAAGAGCACTATATTGTCGTTAGCGACGAAGAC GACAGCTAG
  • Download Fasta

  • Fasta :-

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_321370.1183 SGRAASSSSS0.993unspLdBPK_321370.1183 SGRAASSSSS0.993unspLdBPK_321370.1183 SGRAASSSSS0.993unspLdBPK_321370.1188 SSSSSSPTSS0.996unspLdBPK_321370.1337 SDSDHSPLET0.997unspLdBPK_321370.1377 SYIVVSDEDD0.99unspLdBPK_321370.1126 SASQQSRSDR0.996unspLdBPK_321370.1128 SQQSRSDREG0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India