LdBPK_321570.1 | Metalloprotease M41 FtsH, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_321570.1OTHER0.9999500.0000400.000010
No Results

  • Fasta :-

    >LdBPK_321570.1 MNQNDASPGGSLFQQMYSAQQQQQQMPPPQAYGGQLSLQPPPTLQPQKSSQGDGYAQNPY TVPREGIGALPLTYAGYNYPSQQMIPQQYSYTAQQQPARMPAVYQPPVQDDDYYKGFHDG VVRPSGPVWGSAVSWILPLVVNVAFFVGPIWYFRRKYMHAMASAAGSTAASGGKGGAGGS SNMMSGLMDMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPAKFTRLGAR LPKGCLLTGQPGTGKTLLARAVAGEANTPFFSCSGADFIEIFGGSGPKRVRELFEEAKKA APCVVFIDEIDAIGSRNQGGRSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATNYP EAIDKALLREGRFDRKVTIPMPDHKARCELFEFYLNRIITGDPNCKPKVQVFKTRNEAEA GGSGAAQASPSAALASSEKAATETKALVTEDAKPESIKVIPGVSNKEYAVVLSDRTPGVS PAQISTIVNEGALNAAMNGKEVVPLEVLQDSIDDVLIGKKHRQRMSNASLHRTAYHEVGH CIMAWTNPLQKDVIKLSIIPRGRAGGYTQQVQDEAMEPQTDEFLFSQLCVLMGGRAAERI FEKDISIGAMDDLQRATRLAMEKLLKYGMSKTIGQLAFKPNDKNDGRAWMTWSENLHAKV EAEARALVESAYVHTEKTLLAHKDKHQKLAELLLGKKELDKADIASILGARPVLKA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_321570.1.fa Sequence name : LdBPK_321570 Sequence length : 716 VALUES OF COMPUTED PARAMETERS Coef20 : 3.191 CoefTot : -4.949 ChDiff : 5 ZoneTo : 52 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.812 2.065 0.232 0.822 MesoH : 0.455 0.434 -0.188 0.321 MuHd_075 : 19.749 13.212 6.642 4.045 MuHd_095 : 12.101 12.597 4.076 4.516 MuHd_100 : 15.768 15.747 4.395 4.255 MuHd_105 : 19.621 19.568 6.291 5.737 Hmax_075 : 7.933 2.200 -0.381 2.290 Hmax_095 : 4.500 3.150 -1.305 3.098 Hmax_100 : 3.100 1.700 -2.626 2.340 Hmax_105 : 10.000 8.200 0.066 3.810 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9930 0.0070 DFMC : 0.9957 0.0043
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 716 LdBPK_321570.1 MNQNDASPGGSLFQQMYSAQQQQQQMPPPQAYGGQLSLQPPPTLQPQKSSQGDGYAQNPYTVPREGIGALPLTYAGYNYP 80 SQQMIPQQYSYTAQQQPARMPAVYQPPVQDDDYYKGFHDGVVRPSGPVWGSAVSWILPLVVNVAFFVGPIWYFRRKYMHA 160 MASAAGSTAASGGKGGAGGSSNMMSGLMDMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPAKFTRLGAR 240 LPKGCLLTGQPGTGKTLLARAVAGEANTPFFSCSGADFIEIFGGSGPKRVRELFEEAKKAAPCVVFIDEIDAIGSRNQGG 320 RSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATNYPEAIDKALLREGRFDRKVTIPMPDHKARCELFEFYLNRIIT 400 GDPNCKPKVQVFKTRNEAEAGGSGAAQASPSAALASSEKAATETKALVTEDAKPESIKVIPGVSNKEYAVVLSDRTPGVS 480 PAQISTIVNEGALNAAMNGKEVVPLEVLQDSIDDVLIGKKHRQRMSNASLHRTAYHEVGHCIMAWTNPLQKDVIKLSIIP 560 RGRAGGYTQQVQDEAMEPQTDEFLFSQLCVLMGGRAAERIFEKDISIGAMDDLQRATRLAMEKLLKYGMSKTIGQLAFKP 640 NDKNDGRAWMTWSENLHAKVEAEARALVESAYVHTEKTLLAHKDKHQKLAELLLGKKELDKADIASILGARPVLKA 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................................................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_321570.1 48 PTLQPQK|SS 0.072 . LdBPK_321570.1 64 NPYTVPR|EG 0.115 . LdBPK_321570.1 99 AQQQPAR|MP 0.093 . LdBPK_321570.1 115 QDDDYYK|GF 0.074 . LdBPK_321570.1 123 FHDGVVR|PS 0.099 . LdBPK_321570.1 154 GPIWYFR|RK 0.083 . LdBPK_321570.1 155 PIWYFRR|KY 0.156 . LdBPK_321570.1 156 IWYFRRK|YM 0.102 . LdBPK_321570.1 174 TAASGGK|GG 0.065 . LdBPK_321570.1 195 DMMNPMK|PK 0.059 . LdBPK_321570.1 197 MNPMKPK|NF 0.079 . LdBPK_321570.1 200 MKPKNFR|TE 0.096 . LdBPK_321570.1 204 NFRTEVK|GT 0.069 . LdBPK_321570.1 209 VKGTTFK|DV 0.101 . LdBPK_321570.1 218 IGIPEAK|EE 0.060 . LdBPK_321570.1 222 EAKEELK|QY 0.064 . LdBPK_321570.1 229 QYVDFLK|EP 0.057 . LdBPK_321570.1 233 FLKEPAK|FT 0.072 . LdBPK_321570.1 236 EPAKFTR|LG 0.093 . LdBPK_321570.1 240 FTRLGAR|LP 0.087 . LdBPK_321570.1 243 LGARLPK|GC 0.104 . LdBPK_321570.1 255 GQPGTGK|TL 0.057 . LdBPK_321570.1 260 GKTLLAR|AV 0.137 . LdBPK_321570.1 288 FGGSGPK|RV 0.066 . LdBPK_321570.1 289 GGSGPKR|VR 0.204 . LdBPK_321570.1 291 SGPKRVR|EL 0.085 . LdBPK_321570.1 298 ELFEEAK|KA 0.068 . LdBPK_321570.1 299 LFEEAKK|AA 0.089 . LdBPK_321570.1 316 IDAIGSR|NQ 0.077 . LdBPK_321570.1 321 SRNQGGR|SM 0.373 . LdBPK_321570.1 333 GSSEENR|TI 0.141 . LdBPK_321570.1 348 LDGLTSK|EA 0.069 . LdBPK_321570.1 365 YPEAIDK|AL 0.064 . LdBPK_321570.1 369 IDKALLR|EG 0.073 . LdBPK_321570.1 372 ALLREGR|FD 0.247 . LdBPK_321570.1 375 REGRFDR|KV 0.396 . LdBPK_321570.1 376 EGRFDRK|VT 0.083 . LdBPK_321570.1 385 IPMPDHK|AR 0.064 . LdBPK_321570.1 387 MPDHKAR|CE 0.101 . LdBPK_321570.1 397 FEFYLNR|II 0.093 . LdBPK_321570.1 406 TGDPNCK|PK 0.065 . LdBPK_321570.1 408 DPNCKPK|VQ 0.068 . LdBPK_321570.1 413 PKVQVFK|TR 0.073 . LdBPK_321570.1 415 VQVFKTR|NE 0.118 . LdBPK_321570.1 439 ALASSEK|AA 0.067 . LdBPK_321570.1 445 KAATETK|AL 0.066 . LdBPK_321570.1 453 LVTEDAK|PE 0.058 . LdBPK_321570.1 458 AKPESIK|VI 0.063 . LdBPK_321570.1 466 IPGVSNK|EY 0.073 . LdBPK_321570.1 475 AVVLSDR|TP 0.097 . LdBPK_321570.1 500 NAAMNGK|EV 0.089 . LdBPK_321570.1 519 DDVLIGK|KH 0.057 . LdBPK_321570.1 520 DVLIGKK|HR 0.067 . LdBPK_321570.1 522 LIGKKHR|QR 0.086 . LdBPK_321570.1 524 GKKHRQR|MS 0.131 . LdBPK_321570.1 532 SNASLHR|TA 0.119 . LdBPK_321570.1 551 WTNPLQK|DV 0.079 . LdBPK_321570.1 555 LQKDVIK|LS 0.061 . LdBPK_321570.1 561 KLSIIPR|GR 0.123 . LdBPK_321570.1 563 SIIPRGR|AG 0.095 . LdBPK_321570.1 595 CVLMGGR|AA 0.088 . LdBPK_321570.1 599 GGRAAER|IF 0.092 . LdBPK_321570.1 603 AERIFEK|DI 0.101 . LdBPK_321570.1 615 AMDDLQR|AT 0.080 . LdBPK_321570.1 618 DLQRATR|LA 0.250 . LdBPK_321570.1 623 TRLAMEK|LL 0.065 . LdBPK_321570.1 626 AMEKLLK|YG 0.060 . LdBPK_321570.1 631 LKYGMSK|TI 0.073 . LdBPK_321570.1 639 IGQLAFK|PN 0.064 . LdBPK_321570.1 643 AFKPNDK|ND 0.067 . LdBPK_321570.1 647 NDKNDGR|AW 0.089 . LdBPK_321570.1 659 SENLHAK|VE 0.072 . LdBPK_321570.1 665 KVEAEAR|AL 0.087 . LdBPK_321570.1 677 AYVHTEK|TL 0.063 . LdBPK_321570.1 683 KTLLAHK|DK 0.070 . LdBPK_321570.1 685 LLAHKDK|HQ 0.073 . LdBPK_321570.1 688 HKDKHQK|LA 0.071 . LdBPK_321570.1 696 AELLLGK|KE 0.053 . LdBPK_321570.1 697 ELLLGKK|EL 0.077 . LdBPK_321570.1 701 GKKELDK|AD 0.066 . LdBPK_321570.1 711 ASILGAR|PV 0.111 . LdBPK_321570.1 715 GARPVLK|A- 0.074 . ____________________________^_________________

  • Fasta :-

    >LdBPK_321570.1 ATGAACCAGAACGACGCCTCGCCTGGCGGATCACTGTTCCAGCAAATGTACAGCGCGCAG CAGCAACAGCAGCAGATGCCGCCGCCGCAGGCATACGGAGGCCAGCTTTCACTGCAACCA CCCCCTACTCTTCAGCCGCAGAAAAGCAGCCAGGGTGATGGCTATGCACAAAACCCGTAC ACAGTTCCCCGAGAAGGCATAGGTGCGTTGCCGTTAACCTATGCCGGCTACAACTACCCG TCCCAGCAAATGATACCCCAGCAGTATAGCTACACGGCGCAGCAGCAGCCCGCGCGCATG CCGGCGGTGTATCAGCCGCCGGTCCAGGATGACGACTACTACAAGGGTTTCCACGATGGC GTTGTTCGTCCCTCTGGGCCGGTTTGGGGCAGCGCCGTCAGCTGGATTCTACCCCTTGTC GTGAACGTGGCCTTCTTTGTTGGCCCTATCTGGTACTTCCGGCGCAAGTACATGCATGCC ATGGCGAGTGCGGCCGGCTCCACTGCCGCGTCAGGGGGCAAGGGTGGTGCTGGAGGCTCG TCGAACATGATGAGCGGGCTCATGGACATGATGAACCCGATGAAGCCGAAGAACTTTCGC ACTGAGGTGAAAGGGACGACGTTCAAGGATGTCATCGGCATCCCTGAAGCGAAGGAGGAG CTGAAGCAGTACGTGGACTTCTTGAAGGAGCCCGCCAAGTTCACTCGCCTTGGCGCGCGG CTGCCGAAAGGGTGCCTGCTGACCGGGCAGCCTGGCACCGGCAAGACGCTGCTGGCCCGC GCCGTGGCCGGTGAAGCAAACACGCCGTTTTTTAGCTGCTCGGGCGCCGACTTCATTGAG ATCTTTGGCGGCAGCGGCCCAAAACGTGTGCGTGAGCTCTTCGAGGAGGCGAAGAAAGCG GCTCCCTGCGTTGTGTTCATTGACGAGATCGACGCGATCGGCTCGCGCAACCAGGGTGGC CGCTCCATGGGCGGCGGCGGTAGCAGCGAGGAAAACCGCACTATTAACCAGCTTCTCGCC GAGCTTGATGGCTTGACGAGCAAGGAGGCGATTGTGGTGATTGCCGCCACAAACTATCCG GAGGCGATCGACAAGGCGCTTCTGCGCGAGGGCCGCTTTGACCGCAAGGTGACCATTCCC ATGCCGGATCACAAGGCGCGCTGTGAGCTATTCGAGTTCTACCTCAACCGCATCATCACT GGTGACCCGAACTGCAAGCCCAAGGTCCAGGTGTTCAAGACGCGCAATGAGGCCGAGGCG GGAGGCAGCGGTGCCGCGCAGGCGTCTCCGTCGGCTGCCCTGGCCAGCAGCGAGAAGGCC GCCACAGAGACGAAGGCGCTGGTCACAGAGGACGCCAAACCCGAGTCGATTAAAGTGATC CCCGGCGTGAGCAACAAAGAGTACGCTGTCGTGCTCTCGGACCGCACCCCTGGGGTGTCG CCGGCGCAGATTTCTACGATCGTGAACGAAGGGGCCCTCAACGCGGCCATGAATGGCAAG GAGGTGGTGCCGCTGGAGGTGCTTCAGGACAGCATCGACGACGTCCTCATCGGCAAGAAG CACCGTCAGCGCATGAGCAACGCGTCGCTGCACCGCACCGCCTACCACGAAGTAGGCCAC TGCATCATGGCCTGGACAAACCCGCTGCAGAAGGACGTCATCAAGCTGTCCATCATTCCT CGTGGTCGTGCCGGCGGGTACACGCAGCAGGTGCAGGACGAGGCGATGGAGCCGCAGACA GACGAGTTTCTCTTTTCACAGCTGTGTGTGCTGATGGGCGGCCGCGCCGCGGAGCGAATC TTCGAGAAGGACATCTCCATCGGTGCCATGGACGACCTACAGCGTGCCACCCGCTTGGCG ATGGAAAAGCTGCTCAAGTACGGCATGTCCAAAACCATTGGCCAGCTCGCCTTCAAGCCA AACGACAAGAATGACGGCCGTGCGTGGATGACGTGGTCGGAGAATCTGCACGCCAAGGTG GAGGCCGAGGCCCGCGCGCTTGTCGAGTCGGCTTATGTGCACACAGAGAAGACCCTGCTA GCCCACAAGGATAAGCACCAGAAGCTGGCAGAGTTGCTTCTTGGCAAAAAAGAACTGGAC AAGGCAGATATTGCTAGCATCCTCGGCGCTCGTCCGGTGCTGAAGGCCTAA
  • Download Fasta

  • Fasta :-

    MNQNDASPGGSLFQQMYSAQQQQQQMPPPQAYGGQLSLQPPPTLQPQKSSQGDGYAQNPY TVPREGIGALPLTYAGYNYPSQQMIPQQYSYTAQQQPARMPAVYQPPVQDDDYYKGFHDG VVRPSGPVWGSAVSWILPLVVNVAFFVGPIWYFRRKYMHAMASAAGSTAASGGKGGAGGS SNMMSGLMDMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPAKFTRLGAR LPKGCLLTGQPGTGKTLLARAVAGEANTPFFSCSGADFIEIFGGSGPKRVRELFEEAKKA APCVVFIDEIDAIGSRNQGGRSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATNYP EAIDKALLREGRFDRKVTIPMPDHKARCELFEFYLNRIITGDPNCKPKVQVFKTRNEAEA GGSGAAQASPSAALASSEKAATETKALVTEDAKPESIKVIPGVSNKEYAVVLSDRTPGVS PAQISTIVNEGALNAAMNGKEVVPLEVLQDSIDDVLIGKKHRQRMSNASLHRTAYHEVGH CIMAWTNPLQKDVIKLSIIPRGRAGGYTQQVQDEAMEPQTDEFLFSQLCVLMGGRAAERI FEKDISIGAMDDLQRATRLAMEKLLKYGMSKTIGQLAFKPNDKNDGRAWMTWSENLHAKV EAEARALVESAYVHTEKTLLAHKDKHQKLAELLLGKKELDKADIASILGARPVLKA

  • title: ATP binding site
  • coordinates: Q250,P251,G252,T253,G254,K255,T256,L257,D308,N358
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_321570.1328 SGGGGSSEEN0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India