LdBPK_323830.1 | enoyl-CoA hydratase/isomerase family protein, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_323830.1OTHER0.7470370.0014080.251555
No Results

  • Fasta :-

    >LdBPK_323830.1 MYRTGARCSASVLCKDYPHARHITLNRPNSLNALDYGMIRELHRLYVTEPAPPSSLYILT GAGTKAFCAGGDVIGLATNNPPGCGREFFYWEYQVDYKASIIPAGQVCLWDGYVLGGGAG LSIGSAYRVASEKACFAMPEVAIGMFPDVGASWFLPRLSVPGLGLYMGLTGHRLRGADLV HLGLATHFVPSAKMGELEQALVSMSDAGDVEAVLDKYTTPIAQLPPCTIAYSISSLADHF DITADLTVSSILDACRANAQTDPLTKAAADLMPSFSPTAMTLALELLKRGAKLSTPVEAF QMEYCVSQRIMAEHDFREGVRALLIDKDKKPKWQPSTVAEVAAEAIDAYFRPTTPNQPVW DPVAPLSEPAA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_323830.1.fa Sequence name : LdBPK_323830 Sequence length : 371 VALUES OF COMPUTED PARAMETERS Coef20 : 4.052 CoefTot : -0.373 ChDiff : -8 ZoneTo : 34 KR : 5 DE : 1 CleavSite : 31 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.335 1.182 0.204 0.600 MesoH : 0.395 0.724 -0.067 0.400 MuHd_075 : 36.328 16.020 9.169 6.878 MuHd_095 : 31.253 17.179 8.442 8.047 MuHd_100 : 21.323 16.913 7.766 6.640 MuHd_105 : 18.167 15.206 8.245 6.534 Hmax_075 : 7.438 8.900 2.447 3.870 Hmax_095 : 8.900 7.400 2.618 3.520 Hmax_100 : 3.100 11.800 -0.617 3.760 Hmax_105 : 0.087 7.525 -0.641 2.940 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1848 0.8152 DFMC : 0.1728 0.8272 This protein is probably imported in mitochondria. f(Ser) = 0.0882 f(Arg) = 0.1176 CMi = 0.37594 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 371 LdBPK_323830.1 MYRTGARCSASVLCKDYPHARHITLNRPNSLNALDYGMIRELHRLYVTEPAPPSSLYILTGAGTKAFCAGGDVIGLATNN 80 PPGCGREFFYWEYQVDYKASIIPAGQVCLWDGYVLGGGAGLSIGSAYRVASEKACFAMPEVAIGMFPDVGASWFLPRLSV 160 PGLGLYMGLTGHRLRGADLVHLGLATHFVPSAKMGELEQALVSMSDAGDVEAVLDKYTTPIAQLPPCTIAYSISSLADHF 240 DITADLTVSSILDACRANAQTDPLTKAAADLMPSFSPTAMTLALELLKRGAKLSTPVEAFQMEYCVSQRIMAEHDFREGV 320 RALLIDKDKKPKWQPSTVAEVAAEAIDAYFRPTTPNQPVWDPVAPLSEPAA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_323830.1 3 ----MYR|TG 0.075 . LdBPK_323830.1 7 MYRTGAR|CS 0.087 . LdBPK_323830.1 15 SASVLCK|DY 0.098 . LdBPK_323830.1 21 KDYPHAR|HI 0.119 . LdBPK_323830.1 27 RHITLNR|PN 0.084 . LdBPK_323830.1 40 LDYGMIR|EL 0.087 . LdBPK_323830.1 44 MIRELHR|LY 0.079 . LdBPK_323830.1 65 LTGAGTK|AF 0.068 . LdBPK_323830.1 86 NPPGCGR|EF 0.095 . LdBPK_323830.1 98 EYQVDYK|AS 0.061 . LdBPK_323830.1 128 SIGSAYR|VA 0.096 . LdBPK_323830.1 133 YRVASEK|AC 0.073 . LdBPK_323830.1 157 ASWFLPR|LS 0.102 . LdBPK_323830.1 173 MGLTGHR|LR 0.079 . LdBPK_323830.1 175 LTGHRLR|GA 0.117 . LdBPK_323830.1 193 HFVPSAK|MG 0.068 . LdBPK_323830.1 216 VEAVLDK|YT 0.071 . LdBPK_323830.1 256 SILDACR|AN 0.081 . LdBPK_323830.1 266 QTDPLTK|AA 0.072 . LdBPK_323830.1 288 LALELLK|RG 0.050 . LdBPK_323830.1 289 ALELLKR|GA 0.187 . LdBPK_323830.1 292 LLKRGAK|LS 0.135 . LdBPK_323830.1 309 EYCVSQR|IM 0.077 . LdBPK_323830.1 317 MAEHDFR|EG 0.080 . LdBPK_323830.1 321 DFREGVR|AL 0.073 . LdBPK_323830.1 327 RALLIDK|DK 0.059 . LdBPK_323830.1 329 LLIDKDK|KP 0.065 . LdBPK_323830.1 330 LIDKDKK|PK 0.080 . LdBPK_323830.1 332 DKDKKPK|WQ 0.062 . LdBPK_323830.1 351 AIDAYFR|PT 0.089 . ____________________________^_________________

  • Fasta :-

    >LdBPK_323830.1 ATGTATCGCACGGGCGCGCGTTGCAGCGCGAGCGTGCTGTGCAAAGACTACCCGCATGCG CGCCACATTACCCTCAACCGACCCAATTCACTGAACGCGCTGGATTATGGAATGATACGG GAGCTGCACCGTCTGTACGTGACAGAGCCAGCTCCTCCGTCATCCCTGTACATCCTCACC GGGGCGGGCACAAAGGCATTCTGCGCCGGCGGCGATGTGATCGGCCTCGCGACGAACAAC CCGCCCGGATGCGGTCGTGAATTCTTCTACTGGGAGTACCAAGTAGACTACAAGGCGAGC ATCATTCCTGCTGGGCAGGTGTGCTTGTGGGACGGCTACGTGCTCGGCGGCGGCGCTGGC TTATCGATTGGAAGCGCTTATCGGGTGGCGTCGGAGAAGGCGTGCTTTGCAATGCCTGAG GTGGCCATAGGTATGTTCCCCGACGTAGGGGCTTCGTGGTTCCTGCCGCGGCTGTCGGTG CCTGGGCTGGGGCTCTATATGGGGCTCACCGGCCACCGGCTCCGCGGGGCCGACCTTGTG CACCTTGGGCTTGCAACACACTTTGTGCCATCTGCCAAGATGGGCGAGCTGGAGCAGGCT CTCGTCTCGATGTCGGACGCAGGTGATGTGGAGGCGGTGCTGGACAAGTATACGACACCG ATAGCGCAGCTGCCACCATGCACCATCGCCTATTCCATTTCTTCTCTCGCCGATCATTTT GACATCACGGCAGATCTGACCGTATCGTCCATCTTGGACGCGTGCAGAGCGAATGCGCAG ACGGATCCGCTGACCAAGGCAGCGGCGGATCTCATGCCCTCCTTCTCCCCGACGGCAATG ACGCTCGCACTGGAGCTGCTGAAGCGCGGCGCGAAGCTGAGCACACCCGTGGAGGCGTTC CAGATGGAGTACTGCGTTTCCCAGCGCATCATGGCGGAACACGACTTTCGCGAAGGTGTG CGAGCCCTGCTCATCGATAAAGACAAGAAGCCGAAATGGCAACCGTCAACTGTTGCCGAG GTTGCGGCGGAGGCCATCGATGCGTACTTCCGCCCCACCACACCGAATCAGCCGGTCTGG GATCCAGTGGCGCCGCTCTCGGAGCCCGCAGCGTGA
  • Download Fasta

  • Fasta :-

    MYRTGARCSASVLCKDYPHARHITLNRPNSLNALDYGMIRELHRLYVTEPAPPSSLYILT GAGTKAFCAGGDVIGLATNNPPGCGREFFYWEYQVDYKASIIPAGQVCLWDGYVLGGGAG LSIGSAYRVASEKACFAMPEVAIGMFPDVGASWFLPRLSVPGLGLYMGLTGHRLRGADLV HLGLATHFVPSAKMGELEQALVSMSDAGDVEAVLDKYTTPIAQLPPCTIAYSISSLADHF DITADLTVSSILDACRANAQTDPLTKAAADLMPSFSPTAMTLALELLKRGAKLSTPVEAF QMEYCVSQRIMAEHDFREGVRALLIDKDKKPKWQPSTVAEVAAEAIDAYFRPTTPNQPVW DPVAPLSEPAA

  • title: substrate binding site
  • coordinates: L31,A33,K65,A69,G70,G71,D72,V73,Y113,L115,G116,G117,P139,E140,I143
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_323830.1203 SQALVSMSDA0.991unspLdBPK_323830.1203 SQALVSMSDA0.991unspLdBPK_323830.1203 SQALVSMSDA0.991unspLdBPK_323830.1131 SYRVASEKAC0.991unspLdBPK_323830.1191 SHFVPSAKMG0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India