LdBPK_332700.1 | metallo-peptidase, Clan MF, Family M17

_IDPredictionOTHERSPmTPCS_Position
LdBPK_332700.1OTHER0.9999160.0000460.000038
No Results

  • Fasta :-

    >LdBPK_332700.1 MGTYKRIRSQSAYEEASVSAFVDSCVDYASNVTFHAVEKGRALTSKTGQVQTVLVLGTDA QLKEMATAAACPHYDAAACAAAATAPESRAHVVKVTATVRLLIGKVPSVASRHNCASRPD QVSEIVKQAMAECPAADAEAGLDIYYLGSGHEVSVAVAIARSCRRSFTAKRGHAEQNYLN VGRPVRVVMPSGKTAQLAVIAQCVQLCQRLVDAPTNLLDTVTFTEIAVRWAAKLKAAGID VSADVIAGEELRERGYGGLYGTGKAAEYPPHLVTLSYKPKAAMPPKDRIALVGKGIVYDT GGLAIKPRDGMCTMKHDMGGAAAVFCGLLCLAMLRAPIEVSSILCLADNAVGPRSQRNDD ILRMKSGVTVEVNNTDAEGRLVLSDGVYHACKELSYTPSIIVDMATLTGAQGVATGQHHA AIYTNSEASENRFVAAGKACGDLCFPVVYCPEFHNAEFASAVADFRNSVKSRANAQVSCA GQFIGNNLSKDYEGEWVHVDLAAPATRDEATGFGVALIAQTFAAELL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_332700.1.fa Sequence name : LdBPK_332700 Sequence length : 527 VALUES OF COMPUTED PARAMETERS Coef20 : 4.161 CoefTot : -0.197 ChDiff : -2 ZoneTo : 13 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.218 2.176 0.534 0.734 MesoH : -0.233 0.672 -0.183 0.268 MuHd_075 : 25.800 15.702 8.542 4.571 MuHd_095 : 4.667 6.680 1.822 1.888 MuHd_100 : 3.046 6.154 1.160 1.883 MuHd_105 : 10.288 4.122 2.745 1.925 Hmax_075 : 9.700 5.400 1.344 2.710 Hmax_095 : -0.613 -1.100 -2.441 1.050 Hmax_100 : -1.300 0.500 -2.671 1.050 Hmax_105 : 1.400 4.200 -1.238 2.300 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9505 0.0495 DFMC : 0.8957 0.1043
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 527 LdBPK_332700.1 MGTYKRIRSQSAYEEASVSAFVDSCVDYASNVTFHAVEKGRALTSKTGQVQTVLVLGTDAQLKEMATAAACPHYDAAACA 80 AAATAPESRAHVVKVTATVRLLIGKVPSVASRHNCASRPDQVSEIVKQAMAECPAADAEAGLDIYYLGSGHEVSVAVAIA 160 RSCRRSFTAKRGHAEQNYLNVGRPVRVVMPSGKTAQLAVIAQCVQLCQRLVDAPTNLLDTVTFTEIAVRWAAKLKAAGID 240 VSADVIAGEELRERGYGGLYGTGKAAEYPPHLVTLSYKPKAAMPPKDRIALVGKGIVYDTGGLAIKPRDGMCTMKHDMGG 320 AAAVFCGLLCLAMLRAPIEVSSILCLADNAVGPRSQRNDDILRMKSGVTVEVNNTDAEGRLVLSDGVYHACKELSYTPSI 400 IVDMATLTGAQGVATGQHHAAIYTNSEASENRFVAAGKACGDLCFPVVYCPEFHNAEFASAVADFRNSVKSRANAQVSCA 480 GQFIGNNLSKDYEGEWVHVDLAAPATRDEATGFGVALIAQTFAAELL 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_332700.1 5 --MGTYK|RI 0.063 . LdBPK_332700.1 6 -MGTYKR|IR 0.172 . LdBPK_332700.1 8 GTYKRIR|SQ 0.210 . LdBPK_332700.1 39 TFHAVEK|GR 0.060 . LdBPK_332700.1 41 HAVEKGR|AL 0.124 . LdBPK_332700.1 46 GRALTSK|TG 0.073 . LdBPK_332700.1 63 GTDAQLK|EM 0.058 . LdBPK_332700.1 89 ATAPESR|AH 0.085 . LdBPK_332700.1 94 SRAHVVK|VT 0.090 . LdBPK_332700.1 100 KVTATVR|LL 0.082 . LdBPK_332700.1 105 VRLLIGK|VP 0.062 . LdBPK_332700.1 112 VPSVASR|HN 0.164 . LdBPK_332700.1 118 RHNCASR|PD 0.104 . LdBPK_332700.1 127 QVSEIVK|QA 0.081 . LdBPK_332700.1 161 VAVAIAR|SC 0.151 . LdBPK_332700.1 164 AIARSCR|RS 0.312 . LdBPK_332700.1 165 IARSCRR|SF 0.294 . LdBPK_332700.1 170 RRSFTAK|RG 0.098 . LdBPK_332700.1 171 RSFTAKR|GH 0.158 . LdBPK_332700.1 183 NYLNVGR|PV 0.137 . LdBPK_332700.1 186 NVGRPVR|VV 0.464 . LdBPK_332700.1 193 VVMPSGK|TA 0.066 . LdBPK_332700.1 209 CVQLCQR|LV 0.096 . LdBPK_332700.1 229 FTEIAVR|WA 0.085 . LdBPK_332700.1 233 AVRWAAK|LK 0.079 . LdBPK_332700.1 235 RWAAKLK|AA 0.092 . LdBPK_332700.1 252 IAGEELR|ER 0.090 . LdBPK_332700.1 254 GEELRER|GY 0.110 . LdBPK_332700.1 264 GLYGTGK|AA 0.076 . LdBPK_332700.1 278 LVTLSYK|PK 0.062 . LdBPK_332700.1 280 TLSYKPK|AA 0.098 . LdBPK_332700.1 286 KAAMPPK|DR 0.079 . LdBPK_332700.1 288 AMPPKDR|IA 0.097 . LdBPK_332700.1 294 RIALVGK|GI 0.071 . LdBPK_332700.1 306 TGGLAIK|PR 0.062 . LdBPK_332700.1 308 GLAIKPR|DG 0.141 . LdBPK_332700.1 315 DGMCTMK|HD 0.070 . LdBPK_332700.1 335 LCLAMLR|AP 0.068 . LdBPK_332700.1 354 DNAVGPR|SQ 0.103 . LdBPK_332700.1 357 VGPRSQR|ND 0.193 . LdBPK_332700.1 363 RNDDILR|MK 0.093 . LdBPK_332700.1 365 DDILRMK|SG 0.078 . LdBPK_332700.1 380 NTDAEGR|LV 0.088 . LdBPK_332700.1 392 GVYHACK|EL 0.065 . LdBPK_332700.1 432 SEASENR|FV 0.186 . LdBPK_332700.1 438 RFVAAGK|AC 0.071 . LdBPK_332700.1 466 SAVADFR|NS 0.083 . LdBPK_332700.1 470 DFRNSVK|SR 0.076 . LdBPK_332700.1 472 RNSVKSR|AN 0.162 . LdBPK_332700.1 490 IGNNLSK|DY 0.094 . LdBPK_332700.1 507 LAAPATR|DE 0.120 . ____________________________^_________________

  • Fasta :-

    >LdBPK_332700.1 ATGGGCACCTACAAGCGCATCCGCTCCCAGTCGGCGTACGAGGAGGCGAGCGTGTCCGCC TTCGTAGACAGCTGCGTGGACTATGCGAGCAACGTGACGTTCCACGCGGTGGAGAAAGGC CGTGCGCTGACTTCAAAGACGGGGCAGGTGCAGACGGTGCTCGTGCTGGGCACGGATGCG CAGTTGAAGGAGATGGCGACGGCGGCGGCGTGCCCGCACTACGATGCGGCGGCGTGCGCT GCTGCTGCGACGGCGCCGGAGTCGCGTGCGCACGTCGTGAAGGTGACGGCGACAGTACGG CTGCTGATCGGGAAGGTGCCGTCCGTCGCGTCGCGCCACAACTGCGCGTCGCGGCCGGAC CAGGTGAGCGAAATCGTGAAGCAGGCGATGGCGGAGTGCCCCGCCGCGGACGCCGAGGCT GGGCTGGACATCTACTACCTGGGCAGTGGCCACGAGGTGAGCGTGGCCGTCGCGATTGCG CGGTCGTGCCGGCGGTCGTTCACTGCGAAGCGCGGGCACGCGGAGCAGAACTACCTGAAC GTTGGCCGCCCGGTGCGCGTGGTGATGCCGTCCGGCAAGACGGCGCAGCTCGCTGTGATT GCGCAGTGCGTGCAGCTGTGCCAGCGGCTGGTGGACGCGCCGACGAACCTGCTGGACACG GTGACGTTCACGGAGATCGCTGTGCGGTGGGCAGCGAAGCTGAAGGCCGCCGGCATCGAT GTGTCCGCCGACGTGATCGCTGGAGAGGAGCTCCGCGAGCGTGGGTACGGCGGTCTTTAC GGTACCGGGAAGGCCGCTGAGTACCCGCCGCACCTTGTGACGCTGTCGTACAAGCCGAAG GCTGCTATGCCACCCAAGGATCGAATTGCGCTTGTGGGCAAAGGCATCGTGTACGACACC GGCGGCCTTGCGATCAAGCCCCGCGACGGCATGTGCACGATGAAGCACGACATGGGCGGT GCAGCGGCCGTGTTCTGCGGCTTGTTGTGCCTGGCGATGCTGCGGGCGCCTATTGAGGTG TCGAGCATCTTGTGTCTCGCTGACAACGCCGTGGGCCCCCGGTCGCAGCGCAATGACGAC ATCCTGCGCATGAAGTCCGGCGTCACCGTGGAGGTCAACAACACAGACGCCGAAGGCCGC CTTGTGCTCTCGGACGGTGTCTACCATGCCTGCAAAGAGCTGAGCTACACGCCGAGCATC ATTGTGGACATGGCTACGCTGACAGGCGCGCAAGGCGTTGCCACTGGCCAGCACCACGCT GCCATCTACACGAACTCAGAGGCCAGCGAGAACCGCTTCGTGGCCGCCGGCAAGGCGTGC GGCGACTTGTGTTTTCCAGTCGTGTACTGCCCTGAGTTTCACAACGCCGAGTTTGCCAGC GCTGTGGCCGATTTCAGGAATAGTGTAAAGAGCCGCGCCAATGCACAGGTGAGCTGCGCG GGGCAGTTTATTGGCAACAACCTGTCCAAGGACTACGAGGGCGAATGGGTGCATGTTGAC CTGGCCGCGCCCGCGACCCGCGATGAGGCCACGGGGTTTGGTGTCGCCTTGATTGCGCAG ACGTTTGCAGCGGAGCTGTTGTAG
  • Download Fasta

  • Fasta :-

    MGTYKRIRSQSAYEEASVSAFVDSCVDYASNVTFHAVEKGRALTSKTGQVQTVLVLGTDA QLKEMATAAACPHYDAAACAAAATAPESRAHVVKVTATVRLLIGKVPSVASRHNCASRPD QVSEIVKQAMAECPAADAEAGLDIYYLGSGHEVSVAVAIARSCRRSFTAKRGHAEQNYLN VGRPVRVVMPSGKTAQLAVIAQCVQLCQRLVDAPTNLLDTVTFTEIAVRWAAKLKAAGID VSADVIAGEELRERGYGGLYGTGKAAEYPPHLVTLSYKPKAAMPPKDRIALVGKGIVYDT GGLAIKPRDGMCTMKHDMGGAAAVFCGLLCLAMLRAPIEVSSILCLADNAVGPRSQRNDD ILRMKSGVTVEVNNTDAEGRLVLSDGVYHACKELSYTPSIIVDMATLTGAQGVATGQHHA AIYTNSEASENRFVAAGKACGDLCFPVVYCPEFHNAEFASAVADFRNSVKSRANAQVSCA GQFIGNNLSKDYEGEWVHVDLAAPATRDEATGFGVALIAQTFAAELL

  • title: Substrate-binding/catalytic site
  • coordinates: K294,D299,K306,D317,D376,E378,R380,L407
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_332700.1355 SVGPRSQRND0.994unspLdBPK_332700.1355 SVGPRSQRND0.994unspLdBPK_332700.1355 SVGPRSQRND0.994unspLdBPK_332700.1468 SDFRNSVKSR0.994unspLdBPK_332700.111 SIRSQSAYEE0.996unspLdBPK_332700.1166 SSCRRSFTAK0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India