LdBPK_333000.1 | cysteine peptidase, Clan CA, family C51, putative

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_333000.1OTHER0.9105070.0858230.003671
No Results

  • Fasta :-

    >LdBPK_333000.1 MKNKQPTTVFASLFAYHHFLIPMRSRQPPSGGVEDHADVAASTVLRSSASSSSAAAAASL LQDEVLPRLRKESGPSNAAICDAYATRLRQEATEEERRRGPHWRARCSPSILVALLIWAT IALVVYMKVDNSRLRPGAAPDTTSVETPLSQLPESCRGHYCLREGGKEPFGAVLGAHDGV FAYSNCNSDTCTSLLKYQMAIPLPPGARTALDAPHATTRLMTTGMKWQCVEFARRYWMLR GKPTPAFFGPVVGAADIWDTLTHVTFLDNATTAPLLKFKNGARLGYGGSAPRVGDLLIYP RDAEGFFSYGHVAVVVRVEMTTKAEADDSYMDAAVTSSKPRQRHGLVYLAEQNWDSATWP NPYHNYSRSLPLVVLESAEGLPLQYTIEDSIHGIQGWVRYDDEP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_333000.1.fa Sequence name : LdBPK_333000 Sequence length : 404 VALUES OF COMPUTED PARAMETERS Coef20 : 3.824 CoefTot : -1.685 ChDiff : 0 ZoneTo : 33 KR : 4 DE : 0 CleavSite : 28 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.288 2.688 0.421 0.907 MesoH : -0.366 0.294 -0.316 0.248 MuHd_075 : 16.142 16.748 5.933 4.841 MuHd_095 : 12.723 7.505 2.546 3.355 MuHd_100 : 11.169 10.360 4.237 3.959 MuHd_105 : 13.896 10.042 4.817 3.734 Hmax_075 : 13.067 21.233 1.078 5.215 Hmax_095 : 12.425 9.450 1.515 4.655 Hmax_100 : 12.900 14.300 0.075 5.720 Hmax_105 : 17.033 10.900 1.438 4.700 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9637 0.0363 DFMC : 0.9620 0.0380
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 404 LdBPK_333000.1 MKNKQPTTVFASLFAYHHFLIPMRSRQPPSGGVEDHADVAASTVLRSSASSSSAAAAASLLQDEVLPRLRKESGPSNAAI 80 CDAYATRLRQEATEEERRRGPHWRARCSPSILVALLIWATIALVVYMKVDNSRLRPGAAPDTTSVETPLSQLPESCRGHY 160 CLREGGKEPFGAVLGAHDGVFAYSNCNSDTCTSLLKYQMAIPLPPGARTALDAPHATTRLMTTGMKWQCVEFARRYWMLR 240 GKPTPAFFGPVVGAADIWDTLTHVTFLDNATTAPLLKFKNGARLGYGGSAPRVGDLLIYPRDAEGFFSYGHVAVVVRVEM 320 TTKAEADDSYMDAAVTSSKPRQRHGLVYLAEQNWDSATWPNPYHNYSRSLPLVVLESAEGLPLQYTIEDSIHGIQGWVRY 400 DDEP 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_333000.1 2 -----MK|NK 0.061 . LdBPK_333000.1 4 ---MKNK|QP 0.074 . LdBPK_333000.1 24 HFLIPMR|SR 0.091 . LdBPK_333000.1 26 LIPMRSR|QP 0.079 . LdBPK_333000.1 46 AASTVLR|SS 0.126 . LdBPK_333000.1 68 QDEVLPR|LR 0.084 . LdBPK_333000.1 70 EVLPRLR|KE 0.064 . LdBPK_333000.1 71 VLPRLRK|ES 0.233 . LdBPK_333000.1 87 CDAYATR|LR 0.080 . LdBPK_333000.1 89 AYATRLR|QE 0.079 . LdBPK_333000.1 97 EATEEER|RR 0.073 . LdBPK_333000.1 98 ATEEERR|RG 0.079 . LdBPK_333000.1 99 TEEERRR|GP 0.140 . LdBPK_333000.1 104 RRGPHWR|AR 0.099 . LdBPK_333000.1 106 GPHWRAR|CS 0.152 . LdBPK_333000.1 128 ALVVYMK|VD 0.058 . LdBPK_333000.1 133 MKVDNSR|LR 0.079 . LdBPK_333000.1 135 VDNSRLR|PG 0.082 . LdBPK_333000.1 157 QLPESCR|GH 0.082 . LdBPK_333000.1 163 RGHYCLR|EG 0.108 . LdBPK_333000.1 167 CLREGGK|EP 0.065 . LdBPK_333000.1 196 TCTSLLK|YQ 0.060 . LdBPK_333000.1 208 PLPPGAR|TA 0.105 . LdBPK_333000.1 219 APHATTR|LM 0.118 . LdBPK_333000.1 226 LMTTGMK|WQ 0.056 . LdBPK_333000.1 234 QCVEFAR|RY 0.083 . LdBPK_333000.1 235 CVEFARR|YW 0.110 . LdBPK_333000.1 240 RRYWMLR|GK 0.089 . LdBPK_333000.1 242 YWMLRGK|PT 0.065 . LdBPK_333000.1 277 TTAPLLK|FK 0.070 . LdBPK_333000.1 279 APLLKFK|NG 0.061 . LdBPK_333000.1 283 KFKNGAR|LG 0.072 . LdBPK_333000.1 292 YGGSAPR|VG 0.065 . LdBPK_333000.1 301 DLLIYPR|DA 0.115 . LdBPK_333000.1 317 HVAVVVR|VE 0.081 . LdBPK_333000.1 323 RVEMTTK|AE 0.058 . LdBPK_333000.1 339 AAVTSSK|PR 0.060 . LdBPK_333000.1 341 VTSSKPR|QR 0.107 . LdBPK_333000.1 343 SSKPRQR|HG 0.097 . LdBPK_333000.1 368 PYHNYSR|SL 0.112 . LdBPK_333000.1 399 GIQGWVR|YD 0.095 . ____________________________^_________________

  • Fasta :-

    >LdBPK_333000.1 ATGAAGAACAAGCAACCAACCACGGTGTTTGCCTCACTTTTTGCCTACCACCACTTTCTC ATTCCCATGCGTAGCCGCCAGCCGCCATCTGGCGGCGTCGAAGATCATGCCGACGTCGCC GCTTCTACAGTTCTCCGCTCTTCGGCGTCATCTTCGTCAGCAGCGGCGGCGGCGTCGTTG CTGCAGGACGAGGTATTACCCCGTTTGCGAAAGGAGTCTGGCCCAAGCAATGCAGCGATA TGCGATGCTTACGCGACGAGGCTTCGACAGGAAGCGACAGAAGAGGAGCGGCGCCGCGGG CCGCACTGGCGTGCGCGCTGCTCCCCCAGCATCCTCGTTGCCCTGCTCATCTGGGCAACG ATCGCCCTTGTTGTGTACATGAAGGTGGACAACTCTCGTTTGCGTCCCGGTGCCGCGCCC GACACCACTTCTGTTGAGACGCCGCTTTCGCAACTCCCTGAAAGCTGTCGCGGTCATTAC TGTCTGCGGGAGGGCGGAAAGGAGCCCTTTGGAGCGGTCCTCGGAGCCCACGATGGCGTC TTCGCCTACAGTAACTGCAACAGCGACACCTGCACCTCTTTACTAAAGTACCAGATGGCG ATTCCGCTCCCACCAGGAGCTCGGACGGCTCTGGACGCCCCACACGCGACGACTCGCCTC ATGACAACAGGGATGAAGTGGCAGTGCGTGGAATTCGCTCGTCGGTACTGGATGCTGCGC GGCAAGCCGACCCCCGCGTTCTTCGGCCCTGTGGTAGGCGCCGCAGATATTTGGGACACT CTCACCCACGTTACCTTCCTCGACAACGCGACTACGGCTCCGCTGCTGAAGTTTAAGAAT GGCGCGAGGCTCGGCTACGGCGGCAGCGCACCCCGCGTCGGAGACCTGCTCATCTACCCT CGCGATGCCGAGGGTTTTTTCTCCTACGGCCATGTCGCCGTGGTGGTGAGGGTGGAGATG ACCACGAAGGCCGAGGCAGACGACTCCTACATGGACGCTGCAGTCACATCGTCAAAGCCG CGTCAGCGGCACGGCCTCGTGTATCTAGCGGAGCAAAACTGGGACAGCGCGACTTGGCCG AATCCATACCACAACTACTCACGTTCACTGCCTCTGGTGGTGCTTGAATCAGCGGAGGGG CTGCCTCTGCAGTACACGATCGAGGATTCAATCCATGGCATCCAGGGCTGGGTACGCTAC GATGACGAGCCATAG
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  • Fasta :-

    MKNKQPTTVFASLFAYHHFLIPMRSRQPPSGGVEDHADVAASTVLRSSASSSSAAAAASL LQDEVLPRLRKESGPSNAAICDAYATRLRQEATEEERRRGPHWRARCSPSILVALLIWAT IALVVYMKVDNSRLRPGAAPDTTSVETPLSQLPESCRGHYCLREGGKEPFGAVLGAHDGV FAYSNCNSDTCTSLLKYQMAIPLPPGARTALDAPHATTRLMTTGMKWQCVEFARRYWMLR GKPTPAFFGPVVGAADIWDTLTHVTFLDNATTAPLLKFKNGARLGYGGSAPRVGDLLIYP RDAEGFFSYGHVAVVVRVEMTTKAEADDSYMDAAVTSSKPRQRHGLVYLAEQNWDSATWP NPYHNYSRSLPLVVLESAEGLPLQYTIEDSIHGIQGWVRYDDEP

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_333000.1329 SEADDSYMDA0.995unspLdBPK_333000.1329 SEADDSYMDA0.995unspLdBPK_333000.1329 SEADDSYMDA0.995unspLdBPK_333000.148 SVLRSSASSS0.995unspLdBPK_333000.151 SSSASSSSAA0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India