LdBPK_333010.1 | hypothetical protein, conserved

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_333010.1OTHER0.9999890.0000050.000006
No Results

  • Fasta :-

    >LdBPK_333010.1 MSSPPQDPPDGVNNDGVGGRRRSSKPRPSPLAFPRDRAYGTLDNGNGGEGGSSVGVGNTR QSGLLMNGGTSGRLSSDPMPLWSYAASPIIQIRDHCHQQWLAVLLTVVLLLVTFYFVFGL SAPMRAERCATPFGSLLGESRGVAAYSNCRNDYGGDHMEHFVSVGLQRLYTGSKWQALEY ARRYWILKSLLTFPSLPRADHIILADTANSVNGRRGGRGSSVVPLERYTNLFLPPQVLHN SSEDMPVMKLNGEANNLSASVRLRSWRQALVQPHDIVVYAKNSRTLPSGHVAVVTAVRGP FHSVAAAGKEVHWFIVKNASIQGRQPMAPGSTLPRLLLSQEHEVVNGAVTPPKNTTGSDT ARRPSSGGRENVSADEKGEEMVCGCSVLYYKVFVVEQNWDNSYWEALSYLTKYDWHKHNS QNSIPNGNGTGKESSAKQQRRAETRLRNFTRVLLLHEYSNPHGFFLEDTHNNLILGWVRA SSDA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_333010.1.fa Sequence name : LdBPK_333010 Sequence length : 484 VALUES OF COMPUTED PARAMETERS Coef20 : 2.194 CoefTot : -0.437 ChDiff : 11 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.435 2.853 0.465 0.905 MesoH : 0.285 0.641 -0.166 0.317 MuHd_075 : 16.258 13.143 4.826 2.943 MuHd_095 : 25.571 12.963 6.089 4.515 MuHd_100 : 21.795 9.530 5.235 3.750 MuHd_105 : 17.388 6.233 4.366 3.127 Hmax_075 : 1.600 2.500 -0.779 1.960 Hmax_095 : 6.200 2.100 -0.787 2.700 Hmax_100 : 7.000 0.100 -0.455 2.400 Hmax_105 : -0.350 -3.000 -2.280 1.140 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9977 0.0023 DFMC : 0.9966 0.0034
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 484 LdBPK_333010.1 MSSPPQDPPDGVNNDGVGGRRRSSKPRPSPLAFPRDRAYGTLDNGNGGEGGSSVGVGNTRQSGLLMNGGTSGRLSSDPMP 80 LWSYAASPIIQIRDHCHQQWLAVLLTVVLLLVTFYFVFGLSAPMRAERCATPFGSLLGESRGVAAYSNCRNDYGGDHMEH 160 FVSVGLQRLYTGSKWQALEYARRYWILKSLLTFPSLPRADHIILADTANSVNGRRGGRGSSVVPLERYTNLFLPPQVLHN 240 SSEDMPVMKLNGEANNLSASVRLRSWRQALVQPHDIVVYAKNSRTLPSGHVAVVTAVRGPFHSVAAAGKEVHWFIVKNAS 320 IQGRQPMAPGSTLPRLLLSQEHEVVNGAVTPPKNTTGSDTARRPSSGGRENVSADEKGEEMVCGCSVLYYKVFVVEQNWD 400 NSYWEALSYLTKYDWHKHNSQNSIPNGNGTGKESSAKQQRRAETRLRNFTRVLLLHEYSNPHGFFLEDTHNNLILGWVRA 480 SSDA 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_333010.1 20 NDGVGGR|RR 0.082 . LdBPK_333010.1 21 DGVGGRR|RS 0.106 . LdBPK_333010.1 22 GVGGRRR|SS 0.203 . LdBPK_333010.1 25 GRRRSSK|PR 0.155 . LdBPK_333010.1 27 RRSSKPR|PS 0.140 . LdBPK_333010.1 35 SPLAFPR|DR 0.115 . LdBPK_333010.1 37 LAFPRDR|AY 0.112 . LdBPK_333010.1 60 VGVGNTR|QS 0.086 . LdBPK_333010.1 73 NGGTSGR|LS 0.086 . LdBPK_333010.1 93 SPIIQIR|DH 0.165 . LdBPK_333010.1 125 GLSAPMR|AE 0.123 . LdBPK_333010.1 128 APMRAER|CA 0.381 . LdBPK_333010.1 141 SLLGESR|GV 0.107 . LdBPK_333010.1 150 AAYSNCR|ND 0.088 . LdBPK_333010.1 168 VSVGLQR|LY 0.093 . LdBPK_333010.1 174 RLYTGSK|WQ 0.054 . LdBPK_333010.1 182 QALEYAR|RY 0.070 . LdBPK_333010.1 183 ALEYARR|YW 0.109 . LdBPK_333010.1 188 RRYWILK|SL 0.080 . LdBPK_333010.1 198 TFPSLPR|AD 0.095 . LdBPK_333010.1 214 ANSVNGR|RG 0.115 . LdBPK_333010.1 215 NSVNGRR|GG 0.112 . LdBPK_333010.1 218 NGRRGGR|GS 0.281 . LdBPK_333010.1 227 SVVPLER|YT 0.085 . LdBPK_333010.1 249 EDMPVMK|LN 0.078 . LdBPK_333010.1 262 NLSASVR|LR 0.107 . LdBPK_333010.1 264 SASVRLR|SW 0.316 . LdBPK_333010.1 267 VRLRSWR|QA 0.403 . LdBPK_333010.1 281 DIVVYAK|NS 0.066 . LdBPK_333010.1 284 VYAKNSR|TL 0.082 . LdBPK_333010.1 298 AVVTAVR|GP 0.082 . LdBPK_333010.1 309 SVAAAGK|EV 0.079 . LdBPK_333010.1 317 VHWFIVK|NA 0.075 . LdBPK_333010.1 324 NASIQGR|QP 0.133 . LdBPK_333010.1 335 PGSTLPR|LL 0.107 . LdBPK_333010.1 353 GAVTPPK|NT 0.070 . LdBPK_333010.1 362 TGSDTAR|RP 0.129 . LdBPK_333010.1 363 GSDTARR|PS 0.204 . LdBPK_333010.1 369 RPSSGGR|EN 0.092 . LdBPK_333010.1 377 NVSADEK|GE 0.067 . LdBPK_333010.1 391 CSVLYYK|VF 0.058 . LdBPK_333010.1 412 ALSYLTK|YD 0.079 . LdBPK_333010.1 417 TKYDWHK|HN 0.071 . LdBPK_333010.1 432 NGNGTGK|ES 0.076 . LdBPK_333010.1 437 GKESSAK|QQ 0.077 . LdBPK_333010.1 440 SSAKQQR|RA 0.158 . LdBPK_333010.1 441 SAKQQRR|AE 0.158 . LdBPK_333010.1 445 QRRAETR|LR 0.085 . LdBPK_333010.1 447 RAETRLR|NF 0.088 . LdBPK_333010.1 451 RLRNFTR|VL 0.103 . LdBPK_333010.1 479 LILGWVR|AS 0.096 . ____________________________^_________________

  • Fasta :-

    >LdBPK_333010.1 ATGAGCTCGCCACCGCAGGATCCGCCGGATGGCGTTAACAATGACGGTGTTGGCGGCCGT CGCCGCTCTTCTAAGCCGAGGCCAAGCCCGCTCGCTTTTCCGCGAGATCGCGCCTACGGC ACCCTCGACAACGGCAACGGCGGCGAGGGCGGCAGCAGCGTCGGCGTAGGAAACACTCGG CAAAGTGGCCTTCTCATGAACGGCGGCACAAGCGGGAGGCTCAGCAGCGACCCGATGCCG CTGTGGAGCTACGCTGCCTCGCCTATCATCCAAATTCGCGATCACTGCCATCAGCAGTGG TTGGCGGTCCTGCTTACTGTTGTTCTGCTCCTCGTCACATTCTACTTTGTCTTCGGTCTT TCCGCTCCGATGCGGGCAGAGCGGTGCGCCACGCCGTTTGGCAGTCTGCTGGGAGAAAGC AGAGGTGTGGCGGCGTACAGCAACTGCCGCAACGACTACGGTGGGGATCACATGGAACAC TTCGTCTCCGTAGGGCTGCAGCGACTCTACACTGGCTCCAAATGGCAGGCCCTCGAGTAC GCCCGCCGCTACTGGATCCTGAAATCGCTGCTGACCTTTCCATCCCTTCCCAGGGCGGAT CATATCATTCTCGCTGATACCGCCAACTCCGTGAACGGGCGTCGTGGAGGTCGCGGCAGC TCCGTCGTGCCACTGGAGCGGTACACAAACCTTTTCCTGCCACCCCAGGTTCTGCACAAC AGCAGCGAAGATATGCCTGTGATGAAACTGAATGGAGAGGCCAACAACCTCTCAGCTAGC GTGCGGCTAAGGAGCTGGCGTCAGGCACTCGTGCAGCCCCACGACATTGTCGTGTACGCC AAGAACTCGCGGACGCTGCCGTCTGGTCACGTCGCGGTTGTGACGGCGGTGCGCGGCCCC TTTCACAGCGTCGCCGCAGCTGGCAAGGAAGTACACTGGTTTATTGTGAAGAACGCCTCG ATACAGGGTCGGCAGCCCATGGCTCCTGGATCGACGTTGCCACGGTTACTTCTGTCGCAG GAGCACGAGGTTGTGAATGGCGCCGTGACGCCGCCGAAGAACACGACTGGTAGCGACACG GCAAGGCGTCCTTCCAGCGGCGGCCGTGAGAATGTATCTGCGGACGAGAAAGGCGAGGAA ATGGTGTGCGGGTGTAGCGTTCTCTACTACAAGGTGTTTGTTGTAGAACAAAACTGGGAC AACTCCTATTGGGAAGCGCTGAGCTATTTGACAAAGTATGACTGGCACAAACACAACAGC CAAAACAGTATACCCAACGGCAACGGAACCGGGAAGGAGTCGTCGGCGAAGCAGCAGCGA AGGGCCGAAACGCGGCTGCGCAACTTTACTCGAGTACTCCTCCTGCATGAGTACTCGAAC CCGCATGGGTTCTTCCTCGAAGACACACACAACAATCTCATTCTAGGCTGGGTGCGCGCC TCTTCCGATGCGTAA
  • Download Fasta

  • Fasta :-

    MSSPPQDPPDGVNNDGVGGRRRSSKPRPSPLAFPRDRAYGTLDNGNGGEGGSSVGVGNTR QSGLLMNGGTSGRLSSDPMPLWSYAASPIIQIRDHCHQQWLAVLLTVVLLLVTFYFVFGL SAPMRAERCATPFGSLLGESRGVAAYSNCRNDYGGDHMEHFVSVGLQRLYTGSKWQALEY ARRYWILKSLLTFPSLPRADHIILADTANSVNGRRGGRGSSVVPLERYTNLFLPPQVLHN SSEDMPVMKLNGEANNLSASVRLRSWRQALVQPHDIVVYAKNSRTLPSGHVAVVTAVRGP FHSVAAAGKEVHWFIVKNASIQGRQPMAPGSTLPRLLLSQEHEVVNGAVTPPKNTTGSDT ARRPSSGGRENVSADEKGEEMVCGCSVLYYKVFVVEQNWDNSYWEALSYLTKYDWHKHNS QNSIPNGNGTGKESSAKQQRRAETRLRNFTRVLLLHEYSNPHGFFLEDTHNNLILGWVRA SSDA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_333010.129 SKPRPSPLAF0.994unspLdBPK_333010.129 SKPRPSPLAF0.994unspLdBPK_333010.129 SKPRPSPLAF0.994unspLdBPK_333010.175 SSGRLSSDPM0.994unspLdBPK_333010.1265 SVRLRSWRQA0.995unspLdBPK_333010.1365 SARRPSSGGR0.997unspLdBPK_333010.1366 SRRPSSGGRE0.991unspLdBPK_333010.1435 SGKESSAKQQ0.995unspLdBPK_333010.123 SGRRRSSKPR0.997unspLdBPK_333010.124 SRRRSSKPRP0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India