LdBPK_341130.1 | mitochondrial ATP-dependent zinc metallopeptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_341130.1OTHER0.9088720.0270080.064120
No Results

  • Fasta :-

    >LdBPK_341130.1 MLPQRSPTDAVQRAYTMSPQERVLIAQIAARARLQRTWRHLGILSVLLSALIGYRWYTAQ ARLDADVSNYKAVVVDVPGHTAVYVDDNGKLIGVRNFIDFATFEKTCDPEKDVLIQFSTY YPWIPMLLLCLLPVLAVVNAGFNGSARMITMAAQAEKSRFTFKREMSVSTRLKDVAGLTE AKHEVVEVIDFLKHPGRYQTLGAKLPKGVLLDGPPGVGKTLLAKAVAGEAMVPFVSCSGS EFEEVYVGVGAQRVRELFREAHNCKPCVVFIDEIDAFGRKRRSDGNGSSRGTLNAFLAAL DGFKDASGIMVLAATNRADILDNALTRSGRFDRKISLEKPSYKDRVAIALVHLQPLHLDP SSSLQNYAEMVAALTPGCSGADIFNVCNEAAIQAAREDKEYVGAPHFHLAVERVLVGLEK SAVKYTPHEKERLAYHEAGIVVLNWFQSDTDPVIKSTILPRGRHRTGVTQKLPQNIYIST QERLLQRIVGRLGGYVSEEHFFSDVSTSAAEDLQMATSMARDMVCVYGMDPVHIGHMGFE LDRDDTLQKPFGPEKENAVDIAVETIVQSCLKRARALMLEHLNHTRIIAGLLLKQETLNA HEMWFALGDRPVMTKEFRTYLES
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_341130.1.fa Sequence name : LdBPK_341130 Sequence length : 623 VALUES OF COMPUTED PARAMETERS Coef20 : 3.840 CoefTot : -0.292 ChDiff : 0 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.118 2.424 0.403 0.825 MesoH : -0.262 0.615 -0.276 0.310 MuHd_075 : 30.094 16.298 6.649 5.919 MuHd_095 : 29.309 13.901 7.509 6.493 MuHd_100 : 27.087 11.007 6.225 5.538 MuHd_105 : 24.567 10.448 4.918 4.662 Hmax_075 : 8.488 4.550 -0.745 2.205 Hmax_095 : 8.925 5.950 0.646 2.905 Hmax_100 : 9.400 5.700 0.370 3.040 Hmax_105 : 7.300 3.900 -0.993 2.370 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7824 0.2176 DFMC : 0.8220 0.1780
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 623 LdBPK_341130.1 MLPQRSPTDAVQRAYTMSPQERVLIAQIAARARLQRTWRHLGILSVLLSALIGYRWYTAQARLDADVSNYKAVVVDVPGH 80 TAVYVDDNGKLIGVRNFIDFATFEKTCDPEKDVLIQFSTYYPWIPMLLLCLLPVLAVVNAGFNGSARMITMAAQAEKSRF 160 TFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPGRYQTLGAKLPKGVLLDGPPGVGKTLLAKAVAGEAMVPFVSCSGS 240 EFEEVYVGVGAQRVRELFREAHNCKPCVVFIDEIDAFGRKRRSDGNGSSRGTLNAFLAALDGFKDASGIMVLAATNRADI 320 LDNALTRSGRFDRKISLEKPSYKDRVAIALVHLQPLHLDPSSSLQNYAEMVAALTPGCSGADIFNVCNEAAIQAAREDKE 400 YVGAPHFHLAVERVLVGLEKSAVKYTPHEKERLAYHEAGIVVLNWFQSDTDPVIKSTILPRGRHRTGVTQKLPQNIYIST 480 QERLLQRIVGRLGGYVSEEHFFSDVSTSAAEDLQMATSMARDMVCVYGMDPVHIGHMGFELDRDDTLQKPFGPEKENAVD 560 IAVETIVQSCLKRARALMLEHLNHTRIIAGLLLKQETLNAHEMWFALGDRPVMTKEFRTYLES 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .........................................P...................................... 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_341130.1 5 --MLPQR|SP 0.120 . LdBPK_341130.1 13 PTDAVQR|AY 0.088 . LdBPK_341130.1 22 TMSPQER|VL 0.151 . LdBPK_341130.1 31 IAQIAAR|AR 0.082 . LdBPK_341130.1 33 QIAARAR|LQ 0.095 . LdBPK_341130.1 36 ARARLQR|TW 0.355 . LdBPK_341130.1 39 RLQRTWR|HL 0.336 . LdBPK_341130.1 55 SALIGYR|WY 0.083 . LdBPK_341130.1 62 WYTAQAR|LD 0.076 . LdBPK_341130.1 71 ADVSNYK|AV 0.069 . LdBPK_341130.1 90 YVDDNGK|LI 0.060 . LdBPK_341130.1 95 GKLIGVR|NF 0.075 . LdBPK_341130.1 105 DFATFEK|TC 0.063 . LdBPK_341130.1 111 KTCDPEK|DV 0.088 . LdBPK_341130.1 147 GFNGSAR|MI 0.136 . LdBPK_341130.1 157 MAAQAEK|SR 0.082 . LdBPK_341130.1 159 AQAEKSR|FT 0.148 . LdBPK_341130.1 163 KSRFTFK|RE 0.065 . LdBPK_341130.1 164 SRFTFKR|EM 0.339 . LdBPK_341130.1 171 EMSVSTR|LK 0.123 . LdBPK_341130.1 173 SVSTRLK|DV 0.104 . LdBPK_341130.1 182 AGLTEAK|HE 0.058 . LdBPK_341130.1 193 EVIDFLK|HP 0.065 . LdBPK_341130.1 197 FLKHPGR|YQ 0.095 . LdBPK_341130.1 204 YQTLGAK|LP 0.057 . LdBPK_341130.1 207 LGAKLPK|GV 0.079 . LdBPK_341130.1 219 GPPGVGK|TL 0.064 . LdBPK_341130.1 224 GKTLLAK|AV 0.078 . LdBPK_341130.1 253 VGVGAQR|VR 0.070 . LdBPK_341130.1 255 VGAQRVR|EL 0.093 . LdBPK_341130.1 259 RVRELFR|EA 0.115 . LdBPK_341130.1 265 REAHNCK|PC 0.065 . LdBPK_341130.1 279 EIDAFGR|KR 0.077 . LdBPK_341130.1 280 IDAFGRK|RR 0.084 . LdBPK_341130.1 281 DAFGRKR|RS 0.171 . LdBPK_341130.1 282 AFGRKRR|SD 0.765 *ProP* LdBPK_341130.1 290 DGNGSSR|GT 0.098 . LdBPK_341130.1 304 AALDGFK|DA 0.076 . LdBPK_341130.1 317 VLAATNR|AD 0.074 . LdBPK_341130.1 327 LDNALTR|SG 0.107 . LdBPK_341130.1 330 ALTRSGR|FD 0.246 . LdBPK_341130.1 333 RSGRFDR|KI 0.358 . LdBPK_341130.1 334 SGRFDRK|IS 0.077 . LdBPK_341130.1 339 RKISLEK|PS 0.062 . LdBPK_341130.1 343 LEKPSYK|DR 0.072 . LdBPK_341130.1 345 KPSYKDR|VA 0.165 . LdBPK_341130.1 396 AAIQAAR|ED 0.085 . LdBPK_341130.1 399 QAAREDK|EY 0.147 . LdBPK_341130.1 413 FHLAVER|VL 0.085 . LdBPK_341130.1 420 VLVGLEK|SA 0.088 . LdBPK_341130.1 424 LEKSAVK|YT 0.064 . LdBPK_341130.1 430 KYTPHEK|ER 0.054 . LdBPK_341130.1 432 TPHEKER|LA 0.147 . LdBPK_341130.1 455 DTDPVIK|ST 0.068 . LdBPK_341130.1 461 KSTILPR|GR 0.099 . LdBPK_341130.1 463 TILPRGR|HR 0.081 . LdBPK_341130.1 465 LPRGRHR|TG 0.086 . LdBPK_341130.1 471 RTGVTQK|LP 0.062 . LdBPK_341130.1 483 YISTQER|LL 0.096 . LdBPK_341130.1 487 QERLLQR|IV 0.137 . LdBPK_341130.1 491 LQRIVGR|LG 0.104 . LdBPK_341130.1 521 MATSMAR|DM 0.096 . LdBPK_341130.1 543 MGFELDR|DD 0.083 . LdBPK_341130.1 549 RDDTLQK|PF 0.068 . LdBPK_341130.1 555 KPFGPEK|EN 0.062 . LdBPK_341130.1 572 IVQSCLK|RA 0.065 . LdBPK_341130.1 573 VQSCLKR|AR 0.170 . LdBPK_341130.1 575 SCLKRAR|AL 0.092 . LdBPK_341130.1 586 EHLNHTR|II 0.083 . LdBPK_341130.1 594 IAGLLLK|QE 0.055 . LdBPK_341130.1 610 WFALGDR|PV 0.133 . LdBPK_341130.1 615 DRPVMTK|EF 0.071 . LdBPK_341130.1 618 VMTKEFR|TY 0.078 . ____________________________^_________________

  • Fasta :-

    >LdBPK_341130.1 ATGCTGCCGCAGCGCAGTCCGACTGATGCGGTGCAGCGCGCCTATACAATGTCGCCGCAG GAGCGCGTTCTGATTGCGCAGATCGCGGCACGGGCACGGCTGCAGCGGACGTGGCGCCAC CTTGGCATCCTCTCGGTGTTGCTCTCCGCACTTATTGGATACCGGTGGTACACGGCGCAG GCGCGGCTTGACGCTGACGTGTCGAACTACAAGGCGGTTGTCGTGGACGTGCCCGGCCAT ACCGCCGTCTACGTGGACGACAACGGCAAGCTCATCGGCGTGCGCAACTTCATCGACTTT GCCACGTTCGAGAAGACCTGCGATCCGGAAAAGGATGTGCTGATCCAGTTTAGCACCTAC TACCCATGGATCCCGATGCTGCTGCTATGTCTACTGCCGGTGCTGGCTGTTGTGAACGCC GGCTTCAACGGGTCGGCGCGCATGATCACAATGGCGGCGCAGGCGGAGAAGAGTCGGTTT ACGTTCAAGCGAGAGATGTCGGTAAGTACGCGGCTGAAGGACGTTGCGGGGCTGACGGAG GCAAAGCACGAGGTGGTGGAGGTGATTGACTTCCTCAAGCACCCGGGGCGTTACCAGACG CTTGGTGCGAAGCTGCCGAAGGGCGTGCTGCTCGACGGCCCGCCTGGTGTCGGCAAGACG CTACTGGCCAAGGCGGTGGCTGGCGAGGCCATGGTGCCGTTTGTCAGCTGCTCGGGCAGC GAGTTTGAGGAGGTGTACGTCGGCGTCGGCGCGCAGCGCGTGCGTGAGCTGTTTCGCGAG GCGCATAACTGCAAGCCGTGTGTCGTGTTCATAGACGAGATCGACGCGTTTGGCCGCAAG CGCCGATCAGATGGCAACGGCAGCTCGCGGGGCACCTTGAACGCCTTCCTCGCGGCGCTT GACGGGTTCAAGGATGCGTCTGGCATCATGGTGCTGGCGGCCACGAACCGCGCCGACATC CTAGATAACGCGCTGACTCGCTCCGGCCGCTTCGATCGCAAGATCTCGCTTGAGAAGCCG TCCTACAAGGATCGTGTGGCGATCGCCCTGGTGCATCTGCAGCCGCTCCACCTTGACCCG TCGTCCTCGCTGCAGAACTACGCCGAGATGGTAGCGGCGCTGACACCTGGCTGCAGCGGG GCAGACATCTTCAACGTGTGCAACGAGGCAGCTATCCAGGCGGCGCGTGAGGACAAGGAG TATGTCGGGGCGCCGCACTTCCACTTGGCTGTCGAGCGGGTGCTCGTCGGTCTTGAAAAG AGCGCTGTCAAGTACACACCACACGAGAAAGAGCGACTGGCGTACCACGAGGCGGGGATT GTGGTGCTGAATTGGTTCCAGAGCGACACGGATCCAGTCATCAAGTCCACTATCCTGCCG CGCGGCCGCCACCGCACGGGTGTGACGCAGAAGCTGCCGCAGAACATCTACATATCGACG CAGGAGCGACTGCTGCAACGCATTGTGGGCCGGCTGGGCGGCTACGTGTCAGAGGAGCAC TTCTTCAGCGATGTGTCGACGAGTGCGGCCGAGGATTTGCAGATGGCGACGAGCATGGCA CGCGACATGGTGTGCGTGTATGGCATGGACCCGGTGCACATTGGGCACATGGGATTCGAG CTGGACCGCGACGACACGCTGCAGAAACCGTTTGGCCCCGAGAAAGAGAACGCGGTTGAC ATTGCCGTGGAGACGATTGTGCAGTCTTGCCTAAAGCGGGCGCGAGCTCTGATGCTGGAG CACCTGAATCACACCCGCATCATTGCTGGGCTGCTGCTGAAGCAGGAGACGCTGAATGCA CATGAAATGTGGTTCGCACTGGGCGACCGCCCTGTCATGACGAAGGAGTTCCGGACCTAC CTGGAGAGCTAA
  • Download Fasta

  • Fasta :-

    MLPQRSPTDAVQRAYTMSPQERVLIAQIAARARLQRTWRHLGILSVLLSALIGYRWYTAQ ARLDADVSNYKAVVVDVPGHTAVYVDDNGKLIGVRNFIDFATFEKTCDPEKDVLIQFSTY YPWIPMLLLCLLPVLAVVNAGFNGSARMITMAAQAEKSRFTFKREMSVSTRLKDVAGLTE AKHEVVEVIDFLKHPGRYQTLGAKLPKGVLLDGPPGVGKTLLAKAVAGEAMVPFVSCSGS EFEEVYVGVGAQRVRELFREAHNCKPCVVFIDEIDAFGRKRRSDGNGSSRGTLNAFLAAL DGFKDASGIMVLAATNRADILDNALTRSGRFDRKISLEKPSYKDRVAIALVHLQPLHLDP SSSLQNYAEMVAALTPGCSGADIFNVCNEAAIQAAREDKEYVGAPHFHLAVERVLVGLEK SAVKYTPHEKERLAYHEAGIVVLNWFQSDTDPVIKSTILPRGRHRTGVTQKLPQNIYIST QERLLQRIVGRLGGYVSEEHFFSDVSTSAAEDLQMATSMARDMVCVYGMDPVHIGHMGFE LDRDDTLQKPFGPEKENAVDIAVETIVQSCLKRARALMLEHLNHTRIIAGLLLKQETLNA HEMWFALGDRPVMTKEFRTYLES

  • title: ATP binding site
  • coordinates: P214,P215,G216,V217,G218,K219,T220,L221,D272,N316
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_341130.1336 SDRKISLEKP0.993unspLdBPK_341130.1336 SDRKISLEKP0.993unspLdBPK_341130.1336 SDRKISLEKP0.993unspLdBPK_341130.1341 SLEKPSYKDR0.997unspLdBPK_341130.16 SLPQRSPTDA0.997unspLdBPK_341130.1283 SRKRRSDGNG0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India